BAC Information

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BAC

Clone NameB6Ng01-207N24
Chromosome19 (Build37)
Map Location 29,364,455 - 29,365,547
singlet/doubletsinglet
Overlap geneJak2
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238
Downstream geneInsl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207N24.g
ACCGA026908
length1,100
definitionB6Ng01-207N24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggaaagaaggaatagttgtgtaaaaacctactgttgtacttg
ccgcttagtagacagtgtagaaagcaggttcctttcccgcccctgacctg
agactgagggaattggaaagcaaccgtggtgtagctcagcgatagatagg
ggttgtctagtgtgtacaaagttccaactttagccacagcatctcaaatg
taacagcaaaccccagaatttttaaatgaagcatattggcttatgcctgc
cacgcgtgtgctcaggagactgaggtagggagatagtacactggaggctg
gcttggggttcaatagtgaattccccagcctcagcctgagaaacagtcca
cacaagggagatggagaaggacagagggagagggacagagacagagagag
tgggtggaactagagaggggaggaactgcagaatgcgagggcattgcttt
tcaggtgtgacagaagcagagagcagccggggaagttgacagttgaagtg
ctgtgtggtggagcagcttcaggatgcaggccttcagcagttattctggg
cagattcatgataaatgctagtactcagagtggtggtggtagatggtcat
ctagtttatttcaggctttggtacgtccatgtatttactcacttattaat
caaagcagttctacaggacattcacattattcctcattatgtgaagagtt
caaggccagcctgggccacacaggaaaaagaaagagagatgtgggagagg
gaggaacggggcagtgaggacagcccaagtagcagaagcacacagggatt
cattctgtagcccttctgaagggcagctggtgagtggtcagagacaaatc
ggggctcctgccctccacactgtcctgcctttgtaccatatgaggaggac
agccctaggaagaccatgtgtcatcaaattagggtaaagggctgactcgt
taagagtgcataagttgtagccatttgaaggagtcatgaaagtaccagta
gtcaaaacatattttattaattccttgggttttaattattacttaagcag
aagagtagaagaattgcgactctcaaattaaggttccagttttgaatatt

quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29364455_29365547
seq2: B6Ng01-207N24.g_62_1161

seq1  GAATTCCAGGAAAGAAGGAATAGTTGTGTAAAAACCTACTGTTGTACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAAGAAGGAATAGTTGTGTAAAAACCTACTGTTGTACTTG  50

seq1  CCGCTTAGTAGACAGTGTAGAAAGCAGGTTCCTTTCCCGCCCCTGACCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTTAGTAGACAGTGTAGAAAGCAGGTTCCTTTCCCGCCCCTGACCTG  100

seq1  AGACTGAGGGAATTGGAAAGCAACCGTGGTGTAGCTCAGCGATAGATAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAGGGAATTGGAAAGCAACCGTGGTGTAGCTCAGCGATAGATAGG  150

seq1  GGTTGTCTAGTGTGTACAAAGTTCCAACTTTAGCCACAGCATCTCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTAGTGTGTACAAAGTTCCAACTTTAGCCACAGCATCTCAAATG  200

seq1  TAACAGCAAACCCCAGAATTTTTAAATGAAGCATATTGGCTTATGCCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCAAACCCCAGAATTTTTAAATGAAGCATATTGGCTTATGCCTGC  250

seq1  CACGCGTGTGCTCAGGAGACTGAGGTAGGGAGATAGTACACTGGAGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCGTGTGCTCAGGAGACTGAGGTAGGGAGATAGTACACTGGAGGCTG  300

seq1  GCTTGGGGTTCAATAGTGAATTCCCCAGCCTCAGCCTGAGAAACAGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGGGTTCAATAGTGAATTCCCCAGCCTCAGCCTGAGAAACAGTCCA  350

seq1  CACAAGGGAGATGGAGAAGGACAGAGGGAGAGGGACAGAGACAGAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGGAGATGGAGAAGGACAGAGGGAGAGGGACAGAGACAGAGAGAG  400

seq1  TGGGTGGAACTAGAGAGGGGAGGAACTGCAGAATGCGAGGGCATTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGAACTAGAGAGGGGAGGAACTGCAGAATGCGAGGGCATTGCTTT  450

seq1  TCAGGTGTGACAGAAGCAGAGAGCAGCCGGGGAAGTTGACAGTTGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGACAGAAGCAGAGAGCAGCCGGGGAAGTTGACAGTTGAAGTG  500

seq1  CTGTGTGGTGGAGCAGCTTCAGGATGCAGGCCTTCAGCAGTTATTCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTGGAGCAGCTTCAGGATGCAGGCCTTCAGCAGTTATTCTGGG  550

seq1  CAGATTCATGATAAATGCTAGTACTCAGAGTGGTGGTGGTAGATGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCATGATAAATGCTAGTACTCAGAGTGGTGGTGGTAGATGGTCAT  600

seq1  CTAGTTTATTTCAGGCTTTGGTACGTCCATGTATTTACTCACTTATTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTATTTCAGGCTTTGGTACGTCCATGTATTTACTCACTTATTAAT  650

seq1  CAAAGCAGTTCTACAGGACATTCACATTATTCCTCATTATGTGAAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGTTCTACAGGACATTCACATTATTCCTCATTATGTGAAGAGTT  700

seq1  CAAGGCCAGCCTGGGCCACACAGGAAAAAGAAAGAGAGATGTGGGAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCCTGGGCCACACAGGAAAAAGAAAGAGAGATGTGGGAGAGG  750

seq1  GAGGAACGGGGCAGTGAGGACAGCCCAAGTAGCAGAAGCACACAGGGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACGGGGCAGTGAGGACAGCCCAAGTAGCAGAAGCACACAGGGATT  800

seq1  CATTCTGTAG-CCTTCTGAAGGGCAGCTGGTGAGTGGTCAGAGACAAATC  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGTAGCCCTTCTGAAGGGCAGCTGGTGAGTGGTCAGAGACAAATC  850

seq1  -GGGCTCCTG-CCTCCACACTGTCCTGCCTTTGTACCATATGAGGAGGAC  897
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCTGCCCTCCACACTGTCCTGCCTTTGTACCATATGAGGAGGAC  900

seq1  AG-CCTAGGAAGGACCATGTGTCATCAAATTTAGGTAAA-GGCTGACTCG  945
      || |||||||| |||||||||||||||||||  |||||| ||||||||||
seq2  AGCCCTAGGAA-GACCATGTGTCATCAAATTAGGGTAAAGGGCTGACTCG  949

seq1  TTAAGGAGTGCAATAGTTGTAGCCA-TTGAAGGAGTCATGAAAGTA-CAG  993
      |||| |||||||  ||||||||||| |||||||||||||||||||| |||
seq2  TTAA-GAGTGCATAAGTTGTAGCCATTTGAAGGAGTCATGAAAGTACCAG  998

seq1  TAGTCAAAACATATTTTATTAA-TCCTT-GGTTTTAATTATTACTTAAGG  1041
      |||||||||||||||||||||| ||||| ||||||||||||||||||| |
seq2  TAGTCAAAACATATTTTATTAATTCCTTGGGTTTTAATTATTACTTAA-G  1047

seq1  AAGAAGAGTAG-AGAATTTCGAACCTCAAATTTAGGTT-CAGTTTTAAAA  1089
       |||||||||| |||||| |||  |||||||| ||||| |||||||  ||
seq2  CAGAAGAGTAGAAGAATTGCGACTCTCAAATTAAGGTTCCAGTTTT-GAA  1096

seq1  TATT  1093
      ||||
seq2  TATT  1100