BAC Information

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BAC

Clone NameB6Ng01-208M19
Chromosome19 (Build37)
Map Location 44,220,217 - 44,271,992
singlet/doubletdoublet
Overlap geneBloc1s2, Pkd2l1
Upstream geneLOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1
Downstream geneScd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M19.bB6Ng01-208M19.g
ACCGA027583GA027584
length1,1161,167
definitionB6Ng01-208M19.b B6Ng01-208M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,220,217 - 44,221,331)(44,270,807 - 44,271,992)
sequence
gaattcttgttgttggcctttatgacaagaggcctgcagatttgtgtttc
aaaagtggttggtgtgcttccctggggaaagacaagggggagagcggctc
ctttcctcccattcaaccatggactgaccagaggctgctaaagcaccatt
cagatttccgtgaagtcaaatgcaaatacacagctgggatcagccagaag
gggttgcgtatcacctgtcagttccccagtcaaatatgtggccattttgg
agaacatgtcccggcagagctcattgatgtcagcttcggcaggctccttt
gcttcctcggctgtctccaccgcagcatcatctggcaaggtgtgggtggg
aggtgaggagtaaacgtcctatccccagacctaatccagccaaagcggac
ggttcctaagtccctcccgacttgggctcccgccgccttcgttctcctcc
tgccaccatcccgtcccttctcctcgcacccgcccacctgaaacgccaac
tccgttcccatgctcaggagctaggctttcgtctcagtgccctgactgcg
gtagacaggtccaccggctcctgcatccggacctagcctccccaccatca
gccgccgcatctccatccacacagggtagtacctcgaggtggctgctcct
cccgtcgcgtcgccgggacgccctccgcagccgccgccatgcccgaccca
aggctgcttccggttctaagggcatctgcgcgtgcgccccgcgggtgccc
cgccccgccgcttgctcacagcttccttgctttgatcggcttgcccaagt
cacacctcaaataaggaccttttatcaaagtccaagcatgaagctgaaac
tgaagctaggctattgcgaattagcccgttactgagatcacagtacctgg
ttggcaatgcgttcgtccctgcagccacactctagaacggtcacttgtgc
cagccacggcctgtcttgggttgtggacccatcataacatgtcagctaaa
gttattggaagagaaggtggcctcttcctcagaactccagcaccctgaac
tgttttgttcatcaaagattggttcaaggaattcgcttttcagattcttc
cacaagaaattcggcc
gaattccacagaaggttccagagctggacatgtagctattgctaaccaga
aagtttgaagtgtattcattagcacttgtttctctcagtcccaccatcca
cccttgtctcatgaacccactccaggatgcagacaccctggactgtggtt
ctgatctttcagcaagagacagtttgaagttccccttaggctaactgcgg
aggtcttctacccccctctctgacctagttcgccttcttatctttcctgc
ccatgaggagaaaggaaaacccacagtgccctcagctttgcctttggcgt
ccaaagcacacatgactgtaacctggtgcatttccagacttcacagctac
cttgccaggtctgggaaattccccttcaaagctcagggttaactcactct
ggatttgcaatactctctggtccagatgtgatcgtggggtccgggtttct
ccatgtcctctgctaaagcagcagagagttggtttcatttatcccctttt
aagctgaggacagcagttgagaagagctaagcccaggacccatgctcagt
gggccctcgatgccaccacagaacttcagccttcaggagcactcacagaa
gcccagagtcagcttgggaccctaactgtggccaccctaggacaaggcag
gcagctactggctcatcccccagtactctgcttacaaattgttgttttcc
acagacaaatattagcacctacatattacagatacatgacatcagcctcc
agaccctctgggccacctggcaaagctgtggctgatttgtcacctacttg
gccttgcttagatgtcccagttagggttatcattgctgtgatgaaacacc
atgactagagcgacttgggaagaaacagtttatttgtcttgtgcttccat
atcactgaaggaagccaaggcaaaaactcaaacaaggcatgaacctggag
gcaggggctgatttggagtccgtgaggggtaccgcttactggcttggttc
cacatggcttgctcagctgctttcttatagaacccaggactaccagcagg
gatagccatcacacaagctgggtcctcccatcaactcttataagaaaatg
cctccacgtttggctgtgacacaggtatagagcatttctcatgagtatct
tattctcaatgattcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44220217_44221331
seq2: B6Ng01-208M19.b_48_1163

seq1  GAATTCTTGTTGTTGGCCTTTATGACAAGAGGCCTGCAGATTTGTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTGTTGGCCTTTATGACAAGAGGCCTGCAGATTTGTGTTTC  50

seq1  AAAAGTGGTTGGTGTGCTTCCCTGGGGAAAGACAAGGGGGAGAGCGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGTTGGTGTGCTTCCCTGGGGAAAGACAAGGGGGAGAGCGGCTC  100

seq1  CTTTCCTCCCATTCAACCATGGACTGACCAGAGGCTGCTAAAGCACCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCCATTCAACCATGGACTGACCAGAGGCTGCTAAAGCACCATT  150

seq1  CAGATTTCCGTGAAGTCAAATGCAAATACACAGCTGGGATCAGCCAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCCGTGAAGTCAAATGCAAATACACAGCTGGGATCAGCCAGAAG  200

seq1  GGGTTGCGTATCACCTGTCAGTTCCCCAGTCAAATATGTGGCCATTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCGTATCACCTGTCAGTTCCCCAGTCAAATATGTGGCCATTTTGG  250

seq1  AGAACATGTCCCGGCAGAGCTCATTGATGTCAGCTTCGGCAGGCTCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGTCCCGGCAGAGCTCATTGATGTCAGCTTCGGCAGGCTCCTTT  300

seq1  GCTTCCTCGGCTGTCTCCACCGCAGCATCATCTGGCAAGGTGTGGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTCGGCTGTCTCCACCGCAGCATCATCTGGCAAGGTGTGGGTGGG  350

seq1  AGGTGAGGAGTAAACGTCCTATCCCCAGACCTAATCCAGCCAAAGCGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGAGTAAACGTCCTATCCCCAGACCTAATCCAGCCAAAGCGGAC  400

seq1  GGTTCCTAAGTCCCTCCCGACTTGGGCTCCCGCCGCCTTCGTTCTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTAAGTCCCTCCCGACTTGGGCTCCCGCCGCCTTCGTTCTCCTCC  450

seq1  TGCCACCATCCCGTCCCTTCTCCTCGCACCCGCCCACCTGAAACGCCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCATCCCGTCCCTTCTCCTCGCACCCGCCCACCTGAAACGCCAAC  500

seq1  TCCGTTCCCATGCTCAGGAGCTAGGCTTTCGTCTCAGTGCCCTGACTGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTCCCATGCTCAGGAGCTAGGCTTTCGTCTCAGTGCCCTGACTGCG  550

seq1  GTAGACAGGTCCACCGGCTCCTGCATCCGGACCTAGCCTCCCCACCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGGTCCACCGGCTCCTGCATCCGGACCTAGCCTCCCCACCATCA  600

seq1  GCCGCCGCATCTCCATCCACACAGGGTAGTACCTCGAGGTGGCTGCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCGCATCTCCATCCACACAGGGTAGTACCTCGAGGTGGCTGCTCCT  650

seq1  CCCGTCGCGTCGCCGGGACGCCCTCCGCAGCCGCCGCCATGCCCGACCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCGCGTCGCCGGGACGCCCTCCGCAGCCGCCGCCATGCCCGACCCA  700

seq1  AGGCTGCTTCCGGTTCTAAGGGCATCTGCGCGTGCGCCCCGCGGGTGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCTTCCGGTTCTAAGGGCATCTGCGCGTGCGCCCCGCGGGTGCCC  750

seq1  CGCCCCGCCGCTTGCTCACAGCTTCCTTGCTTTGATCGGCTTGCCCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCGCCGCTTGCTCACAGCTTCCTTGCTTTGATCGGCTTGCCCAAGT  800

seq1  CACACCTCAAATAAGGACCTTTTATCAAAGTCCAAGCATGAAGCTGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCAAATAAGGACCTTTTATCAAAGTCCAAGCATGAAGCTGAAAC  850

seq1  TGAAGCTAAGGCTATTGCGAATTAGCCCGTTACTGAGATCACAGTACCTG  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCT-AGGCTATTGCGAATTAGCCCGTTACTGAGATCACAGTACCTG  899

seq1  GTTGGCAATGCGTTCGTCCCTGCAGCCACACTCTAGAACGGTCACTTGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAATGCGTTCGTCCCTGCAGCCACACTCTAGAACGGTCACTTGTG  949

seq1  CCAGCCACGGCCTGTCTTGGGTTGTGGACCCATCATAACATGTCAGCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCACGGCCTGTCTTGGGTTGTGGACCCATCATAACATGTCAGCTAA  999

seq1  AGTTATTGG-AGAG-AGGTGGCCTCCTCCCCAG-ACACCAGCACCCTGAC  1047
      ||||||||| |||| |||||||||| ||| ||| || |||||||||||| 
seq2  AGTTATTGGAAGAGAAGGTGGCCTCTTCCTCAGAACTCCAGCACCCTGAA  1049

seq1  ATGTTTTGTTCATCAAAGAATTGTTC-AGGGATTCGCTTTTACAGGGTGT  1096
       |||||||||||||||||| | |||| ||| |||||||||| ||  |  |
seq2  CTGTTTTGTTCATCAAAGATTGGTTCAAGGAATTCGCTTTT-CA--GATT  1096

seq1  CTCCCACAAG-ATTTCGGCC  1115
      || ||||||| | |||||||
seq2  CTTCCACAAGAAATTCGGCC  1116

seq1: chr19_44270807_44271992
seq2: B6Ng01-208M19.g_66_1232 (reverse)

seq1  TAGAATCATTTGGGAG-ATAAGATAACTCAATTGAGAAAATGCCTTCATA  49
      ||||||||||   ||| ||||||| |||||  |||| ||||||  ||   
seq2  TAGAATCATT---GAGAATAAGAT-ACTCA--TGAG-AAATGC--TCTAT  41

seq1  ACCTGTGGCCACAGGCAAACGTGGAGGGCATTTTCTTAATTAGGAGTTGA  99
      |||||| | ||||| |||||||||| ||||||||||||  || |||||||
seq2  ACCTGT-GTCACAGCCAAACGTGGA-GGCATTTTCTTA--TAAGAGTTGA  87

seq1  TGGGGGAGGACCCAGCCTGTTGTTGATTGGGCTATCCCTGCTGGTAGTCC  149
      |  ||||||||||||| |||   ||||  |||||||||||||||||||||
seq2  T--GGGAGGACCCAGCTTGT--GTGAT--GGCTATCCCTGCTGGTAGTCC  131

seq1  TGGGTTCTATAAGAAAGCAGGCTGAGCAAGCCATGTGG-ACCAAGCCAGT  198
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  TGGGTTCTATAAGAAAGCA-GCTGAGCAAGCCATGTGGAACCAAGCCAGT  180

seq1  AAGCGGTACCCCTCCACGGACTCCAAATCAGCCCCTGCCTCCAGGTTCAT  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGCGGTACCCCT-CACGGACTCCAAATCAGCCCCTGCCTCCAGGTTCAT  229

seq1  GCCTTGTTTGAGTTTTTGCCTTGGCTTCCTTCAGTGATATGGAAGCACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTTGAGTTTTTGCCTTGGCTTCCTTCAGTGATATGGAAGCACAA  279

seq1  GACAAATAAACTGTTTCTTCCCAAGTCGCTCTAGTCATGGTGTTTCATCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATAAACTGTTTCTTCCCAAGTCGCTCTAGTCATGGTGTTTCATCA  329

seq1  CAGCAATGATAACCCTAACTGGGACATCTAAGCAAGGCCAAGTAGGTGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGATAACCCTAACTGGGACATCTAAGCAAGGCCAAGTAGGTGAC  379

seq1  AAATCAGCCACAGCTTTGCCAGGTGGCCCAGAGGGTCTGGAGGCTGATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCCACAGCTTTGCCAGGTGGCCCAGAGGGTCTGGAGGCTGATGT  429

seq1  CATGTATCTGTAATATGTAGGTGCTAATATTTGTCTGTGGAAAACAACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCTGTAATATGTAGGTGCTAATATTTGTCTGTGGAAAACAACAA  479

seq1  TTTGTAAGCAGAGTACTGGGGGATGAGCCAGTAGCTGCCTGCCTTGTCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGCAGAGTACTGGGGGATGAGCCAGTAGCTGCCTGCCTTGTCCT  529

seq1  AGGGTGGCCACAGTTAGGGTCCCAAGCTGACTCTGGGCTTCTGTGAGTGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCCACAGTTAGGGTCCCAAGCTGACTCTGGGCTTCTGTGAGTGC  579

seq1  TCCTGAAGGCTGAAGTTCTGTGGTGGCATCGAGGGCCCACTGAGCATGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAAGGCTGAAGTTCTGTGGTGGCATCGAGGGCCCACTGAGCATGGG  629

seq1  TCCTGGGCTTAGCTCTTCTCAACTGCTGTCCTCAGCTTAAAAGGGGATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGCTTAGCTCTTCTCAACTGCTGTCCTCAGCTTAAAAGGGGATAA  679

seq1  ATGAAACCAACTCTCTGCTGCTTTAGCAGAGGACATGGAGAAACCCGGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCAACTCTCTGCTGCTTTAGCAGAGGACATGGAGAAACCCGGAC  729

seq1  CCCACGATCACATCTGGACCAGAGAGTATTGCAAATCCAGAGTGAGTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGATCACATCTGGACCAGAGAGTATTGCAAATCCAGAGTGAGTTAA  779

seq1  CCCTGAGCTTTGAAGGGGAATTTCCCAGACCTGGCAAGGTAGCTGTGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCTTTGAAGGGGAATTTCCCAGACCTGGCAAGGTAGCTGTGAAG  829

seq1  TCTGGAAATGCACCAGGTTACAGTCATGTGTGCTTTGGACGCCAAAGGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATGCACCAGGTTACAGTCATGTGTGCTTTGGACGCCAAAGGCA  879

seq1  AAGCTGAGGGCACTGTGGGTTTTCCTTTCTCCTCATGGGCAGGAAAGATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAGGGCACTGTGGGTTTTCCTTTCTCCTCATGGGCAGGAAAGATA  929

seq1  AGAAGGCGAACTAGGTCAGAGAGGGGGGTAGAAGACCTCCGCAGTTAGCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCGAACTAGGTCAGAGAGGGGGGTAGAAGACCTCCGCAGTTAGCC  979

seq1  TAAGGGGAACTTCAAACTGTCTCTTGCTGAAAGATCAGAACCACAGTCCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGAACTTCAAACTGTCTCTTGCTGAAAGATCAGAACCACAGTCCA  1029

seq1  GGGTGTCTGCATCCTGGAGTGGGTTCATGAGACAAGGGTGGATGGTGGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTGCATCCTGGAGTGGGTTCATGAGACAAGGGTGGATGGTGGGA  1079

seq1  CTGAGAGAAACAAGTGCTAATGAATACACTTCAAACTTTCTGGTTAGCAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAAACAAGTGCTAATGAATACACTTCAAACTTTCTGGTTAGCAA  1129

seq1  TAGCTACATGTCCAGCTCTGGAACCTTCTGTGGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||
seq2  TAGCTACATGTCCAGCTCTGGAACCTTCTGTGGAATTC  1167