BAC Information

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BAC

Clone NameB6Ng01-208M20
Chromosome19 (Build37)
Map Location 38,759,442 - 38,759,771
singlet/doubletsinglet
Overlap genePlce1
Upstream geneCyp26c1, Cyp26a1, LOC668248, LOC668251, LOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483
Downstream geneEG667587, Noc3l, Tbc1d12, Hells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208M20.bB6Ng01-208M20.g
ACCGA027585GA027586
length1,207773
definitionB6Ng01-208M20.b B6Ng01-208M20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacctgaggaataccgaatggatgtggagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agttgctggcaaggatttggagaaagaggaacactcctccattgctggtg
ggattgccagcttgtacaaccactctggaaatcagtctggcggtttctca
gaaaattggacatactactactggagaggatccagcaacacctctcctgg
ccatacatccagaagatgttccaactggtatgaaggatacatgttccact
atgctcataacagccttatttataatagccagaagctggaaagaacctag
atgcccctcaacagagatacagaaaaatgtggtacatttacacaatagaa
tactactcagctattaaaaaaaaaggaatttatgaaattccaaggcaaat
ggatggacctggaggacatcattctgagtgaggtaacccaatcacaaaag
aactcacacaaagtatactcactgataagaggttattagcccagaaactt
agaatacccaagatataagatacaatttgctaaacacatgaaagtcaaga
aataagaccaaagtgtggacactttgctgcttcttagaattgggaacaaa
acatccatagaaggagttacagagacacagcttagagctgagaggaaagg
atggacactctagaaactgacatatccaggtatccatcccataatcagct
ttcaaatgctgacaccattgcatacaccagcaagattttgctgaaaggac
cctgatatagctgtctcttgtgaggctgtgccagggcctagcaaacacag
aagtggatgctcacagtcagctaatggatggatcacagggccccccaatg
gaggagctggagaaagtaaccaaaggagctaaagggatctgcaaccctat
aggtggacaacatatgaactaccctgtaccccagagctcgtgtctctatc
ttcataatgtagagatgcctagtcagccatcagtagaagaagaggccatg
gtctgcaactttatctgcctctgttacagggaagcagggaacaagatggt
actgggtgggtgaatgggataggttcataactctaggtactagtcataga
gctcgta
gaattccccacaatatttctaaagtggttgttcaagtttccaagcctagg
aacagtgaatgaggacatgtctttaccacattctctctaggatttgttct
cacttcgtttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttgttccttccttccttcct
tccttcctttctttctttctttctttctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttcttattctct
cttattctctcttcctctctctttctttctttctttctttctttctttct
ttctttctttctttctttctttctttccttttctccttccttccttcttt
ctttctttgttccttcctttcttcctttcttctctctctttctccttcct
ttctttctttctttctttctttctttctttctttctttctttctttcttt
cttttctttctttctttctttctttcagtcttcttcttcttattctctct
tcctctctctctcttcttctatctctctttctctcttcttcttcttcctt
cttcctcctcttattcttttcttcttctcctcttcttccttccttccttc
ttcttctttcttgttcctcttcttccttctctctctctcttctcttctct
tcctcttctctctcttctctcctcttctcttcttcttcttcttcttcttc
ttctctcttctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38759442_38759771
seq2: B6Ng01-208M20.g_322_836 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AGAGAGAGAGAGAGAAGAGAGAAGAAGAAGAAGAAGAAGAAGAAGAGAAG  50

seq1  --------------------------------------------------  0
                                                        
seq2  AGGAGAGAAGAGAGAGAAGAGGAAGAGAAGAGAAGAGAGAGAGAGAAGGA  100

seq1  --------------------------------------------------  0
                                                        
seq2  AGAAGAGGAACAAGAAAGAAGAAGAAGGAAGGAAGGAAGAAGAGGAGAAG  150

seq1  -------------------------------------AGAGAGAGAGAGA  13
                                           ||||||| |||||
seq2  AAGAAAAGAATAAGAGGAGGAAGAAGGAAGAAGAAGAAGAGAGAAAGAGA  200

seq1  GA-AAAAGAA-AGAAAGAAAGAAAGAAAGA--AAGAA-AGAAAGAAAGAA  58
      || | ||||| ||| ||| || |||| |||  ||||| |  ||||  |||
seq2  GATAGAAGAAGAGAGAGAGAGGAAGAGAGAATAAGAAGAAGAAGACTGAA  250

seq1  AGAAAGAAAGAAAGAAAG-GAAGGAAGGAAGAAAGAGAGAGAGAAAGAGA  107
      ||||||||||||||||||  ||| ||| |||||||| ||| ||||||| |
seq2  AGAAAGAAAGAAAGAAAGAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  300

seq1  GAAAGAAAGAAAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAAA  157
      |||||||||||||| ||| ||| || ||| |||| ||||||||| |||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGGAAG-GAGAAAGAGAGAGA-AGAAA  348

seq1  GAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGAAAGAGAGAAA  207
      |   ||||||| ||| || |||||||||||| ||||||| ||| ||||||
seq2  G--GAAGAAAGGAAGGAACAAAGAAAGAAAG-AAGGAAGGAAG-GAGAAA  394

seq1  GAGAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAAAGAAAGAAAGAAAGA  257
       || |||||||||||||||||||||| ||| |||||||||||||||||||
seq2  -AG-GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  442

seq1  AAGAAAGAGAGAGAGAGAGAAAGAGAGAAAGAAAGAAAGAGAGAGAGAGA  307
      |||||||| ||||||||  | |||||  |||| ||||  ||| ||| |||
seq2  AAGAAAGAAAGAGAGAGGAAGAGAGAATAAGAGAGAATAAGAAAGAAAGA  492

seq1  GAGAAAGAAAGAAAGAAAGAGAG  330
       ||||||||||||||||||| ||
seq2  AAGAAAGAAAGAAAGAAAGAAAG  515