BAC Information

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BAC

Clone NameB6Ng01-208N18
Chromosome19 (Build37)
Map Location 5,740,306 - 5,893,338
singlet/doubletdoublet
Overlap geneLtbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3
Upstream geneSpnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1
Downstream geneDpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208N18.bB6Ng01-208N18.g
ACCGA027627GA027628
length2081,050
definitionB6Ng01-208N18.b B6Ng01-208N18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,740,306 - 5,740,513)(5,892,318 - 5,893,338)
sequence
caaggcttggagagcacgagattccaagcctggactgtttgacagcgcct
tgttccaaggtgagcctctgcctactctgcacaggggagggtcaggttta
caccagttcaaaggaaaaaatgaatgtaagagcgctcagcaccactcctg
ccaggtggaaagtattcagtgttactgttgcaacagtgttactagagcag
ggggaggg
gaattctctccacttcggaccagaaacactcgactctgccagctctcttc
tgggtctagccctctcctcccacagcctggccatctcatgtctctttcag
ctggcctggtctcctccagctttctgcattccagagaattgctctggctt
caggggtcccgacctcttctgttcttcttgctctcagccattggcacgct
ctcctacttttcttcccccagcagcttcccagggagtcatggagctgaac
accaagaagaagcttcacgccctgtccctggctgagaagatccaggtgct
ggaactcttggatgagtctaagatgtcccagtcagaggtggcccggcgct
tccaggtctcacagccccagatctcacggatctgcaagaataaggagaag
ctgttggcagactggtgcagtggcacagccaaccacgagcggaagcggaa
gcgtgaatccaaatacagtgggatcgatgaggctctactgtgctggtacc
acattgcccgagccaaggcctgggatgtaacggggcccatgttgctccac
aaggccaaggaactggccgatatcatgggccaggatttcgtgcctagcat
tggctggctggtccgctggaaacgtcgaaacaatgtgggctttgggactc
gccaggtccttgtccctctgttccctcctgaagctcctcctgcagttctc
ccatctcaggcccagccacctctttctcttaaagacttctcaccagaaga
tgtttttggctgtgctgaagtacccttgttgtatcgcgcggtgcctggca
gagtgttttgaatgtgatcgggttgcaagtactgttatgtgcccaaacag
ccagaggcacagaaaaagcgaagggtatttggtgggtgggcttccaggcg
gccccaaagatgctttcttttgggggtgaagcaagtgaggcactgccctt
acttcttatcaacccctgaccttagcctatttccctgggtcagaagtggg
ctggccacaagttggaccaggaacaatgggaacagcaggccgaacaggta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5740306_5740513
seq2: B6Ng01-208N18.b_51_258

seq1  CAAGGCTTGGAGAGCACGAGATTCCAAGCCTGGACTGTTTGACAGCGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTTGGAGAGCACGAGATTCCAAGCCTGGACTGTTTGACAGCGCCT  50

seq1  TGTTCCAAGGTGAGCCTCTGCCTACTCTGCACAGGGGAGGGTCAGGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAAGGTGAGCCTCTGCCTACTCTGCACAGGGGAGGGTCAGGTTTA  100

seq1  CACCAGTTCAAAGGAAAAAATGAATGTAAGAGCGCTCAGCACCACTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGTTCAAAGGAAAAAATGAATGTAAGAGCGCTCAGCACCACTCCTG  150

seq1  CCAGGTGGAAAGTATTCAGTGTTACTGTTGCAACAGTGTTACTAGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGGAAAGTATTCAGTGTTACTGTTGCAACAGTGTTACTAGAGCAG  200

seq1  GGGGAGGG  208
      ||||||||
seq2  GGGGAGGG  208

seq1: chr19_5892318_5893338
seq2: B6Ng01-208N18.g_73_1122 (reverse)

seq1  TACCTGTCGGCCCTGCTG-TCCCAT--GTCCTGGTCAAAC-TGT-GCCAG  45
      |||||||  | ||||||| ||||||   |||||||| ||| ||| |||||
seq2  TACCTGTTCGGCCTGCTGTTCCCATTGTTCCTGGTCCAACTTGTGGCCAG  50

seq1  -CCAC-TCTGA-CCAGGGAA--TGGCT-AGGTCAGGG--TGATAAGAGGT  87
       |||| ||||| ||||||||   |||| |||||||||  |||||||| ||
seq2  CCCACTTCTGACCCAGGGAAATAGGCTAAGGTCAGGGGTTGATAAGAAGT  100

seq1  A--GGCAGTGCCTCAC-TGC-TCACCCC--AAAG-AAGCATC-TTGGGGC  129
      |  ||||||||||||| ||| |||||||  |||| ||||||| |||||||
seq2  AAGGGCAGTGCCTCACTTGCTTCACCCCCAAAAGAAAGCATCTTTGGGGC  150

seq1  CGCCTGG-AGCCCACCCA-CAAATACCCTTCGC-TTTTCTGTGCCTCT-G  175
      ||||||| |||||||||| |||||||||||||| |||||||||||||| |
seq2  CGCCTGGAAGCCCACCCACCAAATACCCTTCGCTTTTTCTGTGCCTCTGG  200

seq1  CTGTT--GGCACATAACAGTACTTGCAA-CCGATCACATTC-AAACACTC  221
      |||||  ||||||||||||||||||||| |||||||||||| ||||||||
seq2  CTGTTTGGGCACATAACAGTACTTGCAACCCGATCACATTCAAAACACTC  250

seq1  TGCCAGGCACCGCGCGATACAACAAGGGTACTTCAGCACAGCCAAAAACA  271
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCACCGCGCGATACAACAAGGGTACTTCAGCACAGCCAAAAACA  300

seq1  TCTTCTGGTGAGAAGTCTTTAAGAGAAAGAGGTGGCTGGGCCTGAGATGG  321
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGTGAGAAGTCTTTAAGAGAAAGAGGTGGCTGGGCCTGAGATGG  350

seq1  GAGAACTGCAGGAGGAGCTTCAGGAGGGAACAGAGGGACAAGGACCTGGC  371
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTGCAGGAGGAGCTTCAGGAGGGAACAGAGGGACAAGGACCTGGC  400

seq1  GAGTCCCAAAGCCCACATTGTTTCGACGTTTCCAGCGGACCAGCCAGCCA  421
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCAAAGCCCACATTGTTTCGACGTTTCCAGCGGACCAGCCAGCCA  450

seq1  ATGCTAGGCACGAAATCCTGGCCCATGATATCGGCCAGTTCCTTGGCCTT  471
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCACGAAATCCTGGCCCATGATATCGGCCAGTTCCTTGGCCTT  500

seq1  GTGGAGCAACATGGGCCCCGTTACATCCCAGGCCTTGGCTCGGGCAATGT  521
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCAACATGGGCCCCGTTACATCCCAGGCCTTGGCTCGGGCAATGT  550

seq1  GGTACCAGCACAGTAGAGCCTCATCGATCCCACTGTATTTGGATTCACGC  571
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCAGCACAGTAGAGCCTCATCGATCCCACTGTATTTGGATTCACGC  600

seq1  TTCCGCTTCCGCTCGTGGTTGGCTGTGCCACTGCACCAGTCTGCCAACAG  621
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCTTCCGCTCGTGGTTGGCTGTGCCACTGCACCAGTCTGCCAACAG  650

seq1  CTTCTCCTTATTCTTGCAGATCCGTGAGATCTGGGGCTGTGAGACCTGGA  671
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTATTCTTGCAGATCCGTGAGATCTGGGGCTGTGAGACCTGGA  700

seq1  AGCGCCGGGCCACCTCTGACTGGGACATCTTAGACTCATCCAAGAGTTCC  721
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCGGGCCACCTCTGACTGGGACATCTTAGACTCATCCAAGAGTTCC  750

seq1  AGCACCTGGATCTTCTCAGCCAGGGACAGGGCGTGAAGCTTCTTCTTGGT  771
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGGATCTTCTCAGCCAGGGACAGGGCGTGAAGCTTCTTCTTGGT  800

seq1  GTTCAGCTCCATGACTCCCTGGGAAGCTGCTGGGGGAAGAAAAGTAGGAG  821
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTCCATGACTCCCTGGGAAGCTGCTGGGGGAAGAAAAGTAGGAG  850

seq1  AGCGTGCCAATGGCTGAGAGCAAGAAGAACAGAAGAGGTCGGGACCCCTG  871
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGCCAATGGCTGAGAGCAAGAAGAACAGAAGAGGTCGGGACCCCTG  900

seq1  AAGCCAGAGCAATTCTCTGGAATGCAGAAAGCTGGAGGAGACCAGGCCAG  921
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGCAATTCTCTGGAATGCAGAAAGCTGGAGGAGACCAGGCCAG  950

seq1  CTGAAAGAGACATGAGATGGCCAGGCTGTGGGAGGAGAGGGCTAGACCCA  971
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAGACATGAGATGGCCAGGCTGTGGGAGGAGAGGGCTAGACCCA  1000

seq1  GAAGAGAGCTGGCAGAGTCGAGTGTTTCTGGTCCGAAGTGGAGAGAATTC  1021
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGCTGGCAGAGTCGAGTGTTTCTGGTCCGAAGTGGAGAGAATTC  1050