BAC Information

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BAC

Clone NameB6Ng01-209H07
Chromosome19 (Build37)
Map Location 21,894,025 - 22,070,645
singlet/doubletdoublet
Overlap geneTmem2, EG433229
Upstream geneTmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik
Downstream geneTrpm3, EG433230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209H07.bB6Ng01-209H07.g
ACCGA028068GA028069
length7971,114
definitionB6Ng01-209H07.b B6Ng01-209H07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,894,025 - 21,894,818)(22,069,542 - 22,070,645)
sequence
gaattcagtctggtctagaactcacagggcctgcctgcctctgcatccaa
gtgttgggattactggaaggagctaccaaatctggtcacacctgctttta
aaaaggttttttatagttggtagtttcaatgagttcgtgccagaaaaact
gttaaacagttggcttctttttctgccttgaaagaacttatctaagcctg
ctggctgagctggctcagggcttgcgtcacaagtgtgagatgtcagtgca
acctccctacaaggcaggcgaggtgccaggagaggtaaggggagtcctgg
gattgctgaacagagtccagctgaatcatgcagcaccgggtccactgaga
gaccctgtcatgaaactaatgtgagtcgtgagtgaggaaaccagctgaca
ggagcatcctgcctccacacatgtttgttccctcatgtttgtatgcatgt
atgcaaaggccacgctatgtactttatatgtttgtatatagtatgtacat
ggatggaggaataagtatattaagaggctgtggacattgtaactggactc
ctcattatggcttcagaagtttgttactagataaacctgtacgtattatg
aaaatggtaattattccttcatactctgagtttctcttaccagttttcaa
atgcagacatactaaggaactagactccattagtaagctgtaacctcaga
gctaattatagaaggggaatgactagatagttggcagctgtatgtatgtg
tggagcagtggtgcagactatgtcccacgtgtgttcatgccacccag
gaattctttcagcctttgctatccagaatgccctttgatccttttattgg
accctctatgtgggaggtaattggcctgtggactatctttttcacaaata
ctgaaatattgtttttatatcaacaaaataagtgttttaaattatctttt
taaactctatattttcccccaaacaaacaaacaaacaaaaaacctctctt
ggattttcaaaagaaagttgtgtcatcagaaaatgagattaaatcatttc
ttcaatatttcataatattacttgtttgaacaatctccttcttgccttat
tatctggtacatttttattggcctaacggtgttagaaatcatccttaact
aactaattttttaaaagtatgatttgttctatgagatgaagttttctaaa
ggatactattttctttcctatataattttaaaacacctcatttcctcaga
tatgaaacctaacttgaccataaaattataccaacagatgaaatatgcaa
agatggtagaaataaaatattgtccctagtaaatggctatcatcacagga
atcataacatgaattcatttttctttttagattattagaaaaggaccaaa
aagtacctaataatctccactccttggcttaagatgatgtcactctggat
ttttttccaggaaatttgcataaccaaaatatcccatctacatgaattat
ggaaattaataaattctgctccaaaatgattattgatattcttggtcata
ttctccatgatttattatcagcttacataaagcaattgaagcaattttct
agggctggtacttttatgggaaaactatttgtaattgattctaatttatg
aatttattctacactaaattatttgcaacaggatccctctaaactatgaa
ctatgtgaagactttgtattctaacagagttagagacctaactacgagta
ataggtcttgcagtatgattcattcagctcactgaaccattaacaaactt
gtttgtctgccctatactgtctcttataaaaacagaagaataatgttaaa
aacccaccacgtcagatttgtgttaaaatttaaatgaaataataatatgt
gggaaaaataaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21894025_21894818
seq2: B6Ng01-209H07.b_46_842

seq1  GAATTCAGTCTGGTCTAGAACTCACAGGGCCTGCCTGCCTCTGCATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTGGTCTAGAACTCACAGGGCCTGCCTGCCTCTGCATCCAA  50

seq1  GTGTTGGGATTACTGGAAGGAGCTACCAAATCTGGTCACACCTGCTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGATTACTGGAAGGAGCTACCAAATCTGGTCACACCTGCTTTTA  100

seq1  AAAAGGTTTTTTATAGTTGGTAGTTTCAATGAGTTCGTGCCAGAAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTTTTTTATAGTTGGTAGTTTCAATGAGTTCGTGCCAGAAAAACT  150

seq1  GTTAAACAGTTGGCTTCTTTTTCTGCCTTGAAAGAACTTATCTAAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAACAGTTGGCTTCTTTTTCTGCCTTGAAAGAACTTATCTAAGCCTG  200

seq1  CTGGCTGAGCTGGCTCAGGGCTTGCGTCACAAGTGTGAGATGTCAGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAGCTGGCTCAGGGCTTGCGTCACAAGTGTGAGATGTCAGTGCA  250

seq1  ACCTCCCTACAAGGCAGGCGAGGTGCCAGGAGAGGTAAGGGGAGTCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTACAAGGCAGGCGAGGTGCCAGGAGAGGTAAGGGGAGTCCTGG  300

seq1  GATTGCTGAACAGAGTCCAGCTGAATCATGCAGCACCGGGTCCACTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGAACAGAGTCCAGCTGAATCATGCAGCACCGGGTCCACTGAGA  350

seq1  GACCCTGTCATGAAACTAATGTGAGTCGTGAGTGAGGAAACCAGCTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGTCATGAAACTAATGTGAGTCGTGAGTGAGGAAACCAGCTGACA  400

seq1  GGAGCATCCTGCCTCCACACATGTTTGTTCCCTCATGTTTGTATGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCCTGCCTCCACACATGTTTGTTCCCTCATGTTTGTATGCATGT  450

seq1  ATGCAAAGGCCACGCTATGTACTTTATATGTTTGTATATAGTATGTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGGCCACGCTATGTACTTTATATGTTTGTATATAGTATGTACAT  500

seq1  GGATGGAGGAATAAGTATATTAAGAGGCTGTGGACATTGTAACTGGACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAGGAATAAGTATATTAAGAGGCTGTGGACATTGTAACTGGACTC  550

seq1  CTCATTATGGCTTCAGAAGTTTGTTACTAGATAAACCTGTACGTATTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTATGGCTTCAGAAGTTTGTTACTAGATAAACCTGTACGTATTATG  600

seq1  AAAATGGTAATTATTCCTTCATACTCTGAG-TTCTCTTACCAGTTTTCAA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAATGGTAATTATTCCTTCATACTCTGAGTTTCTCTTACCAGTTTTCAA  650

seq1  ATGCAGACATACTAAGGAACTAGACTCCATTAGTAAGCTGTAACCTCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGACATACTAAGGAACTAGACTCCATTAGTAAGCTGTAACCTCAGA  700

seq1  GCTAATTATAGAAGGGGAATGACTAGATAGTTGGCAGCTGTATGTATGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTATAGAAGGGGAATGACTAGATAGTTGGCAGCTGTATGTATGTG  750

seq1  TGGAGCAGT-GTGCAGACTATGT-CCACGTGTGTTCATGCAACCCAG  794
      ||||||||| ||||||||||||| |||||||||||||||| ||||||
seq2  TGGAGCAGTGGTGCAGACTATGTCCCACGTGTGTTCATGCCACCCAG  797

seq1: chr19_22069542_22070645
seq2: B6Ng01-209H07.g_65_1178 (reverse)

seq1  TATTTA-TTTTCACACATA-TATTATTTCATTTAAATTTT-ACAACAATC  47
      |||||| ||||| |||||| |||||||||||||||||||| |||  ||||
seq2  TATTTATTTTTCCCACATATTATTATTTCATTTAAATTTTAACACAAATC  50

seq1  TGACGTGGTGGGTTTTTAACATTAT--CTCTG-TTTTATAAGAGACAGTA  94
      |||||||||||||||||||||||||   |||| |||||||||||||||| 
seq2  TGACGTGGTGGGTTTTTAACATTATTCTTCTGTTTTTATAAGAGACAGT-  99

seq1  ATAGGGCAGAC-AACAAGTTTGTTAATGGTTCAGTGAGCTGAATGAATCA  143
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGCAGACAAACAAGTTTGTTAATGGTTCAGTGAGCTGAATGAATCA  149

seq1  TACTGCAAGACCTATTACTCGTAGTTAGGTCTCTAACTCTG-TAGAATAC  192
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACTGCAAGACCTATTACTCGTAGTTAGGTCTCTAACTCTGTTAGAATAC  199

seq1  AAAGTCTTCACATAGTTCATAGTTTAGAGGGGATCCTGTTGCAA--TATT  240
      |||||||||||||||||||||||||||| |||||||||||||||   |||
seq2  AAAGTCTTCACATAGTTCATAGTTTAGA-GGGATCCTGTTGCAAATAATT  248

seq1  TAGT-TAGAATAAATTCATAAATTAGAATCAATTACAAATAGTTTTCCCA  289
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGAATAAATTCATAAATTAGAATCAATTACAAATAGTTTTCCCA  298

seq1  TAAAAGTACCAGCCCTAGAAAATTGCTTCAATTGCTTTATGTAAGCTGAT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACCAGCCCTAGAAAATTGCTTCAATTGCTTTATGTAAGCTGAT  348

seq1  AATAAATCATGGAGAATATGACCAAGAATATCAATAATCATTTTGGAGCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCATGGAGAATATGACCAAGAATATCAATAATCATTTTGGAGCA  398

seq1  GAATTTATTAATTTCCATAATTCATGTAGATGGGATATTTTGGTTATGCA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTATTAATTTCCATAATTCATGTAGATGGGATATTTTGGTTATGCA  448

seq1  AATTTCCTGGAAAAAAATCCAGAGTGACATCATCTTAAGCCAAGGAGTGG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCTGGAAAAAAATCCAGAGTGACATCATCTTAAGCCAAGGAGTGG  498

seq1  AGATTATTAGGTACTTTTTGGTCCTTTTCTAATAATCTAAAAAGAAAAAT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTAGGTACTTTTTGGTCCTTTTCTAATAATCTAAAAAGAAAAAT  548

seq1  GAATTCATGTTATGATTCCTGTGATGATAGCCATTTACTAGGGACAATAT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTATGATTCCTGTGATGATAGCCATTTACTAGGGACAATAT  598

seq1  TTTATTTCTACCATCTTTGCATATTTCATCTGTTGGTATAATTTTATGGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTACCATCTTTGCATATTTCATCTGTTGGTATAATTTTATGGT  648

seq1  CAAGTTAGGTTTCATATCTGAGGAAATGAGGTGTTTTAAAATTATATAGG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGGTTTCATATCTGAGGAAATGAGGTGTTTTAAAATTATATAGG  698

seq1  AAAGAAAATAGTATCCTTTAGAAAACTTCATCTCATAGAACAAATCATAC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATAGTATCCTTTAGAAAACTTCATCTCATAGAACAAATCATAC  748

seq1  TTTTAAAAAATTAGTTAGTTAAGGATGATTTCTAACACCGTTAGGCCAAT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATTAGTTAGTTAAGGATGATTTCTAACACCGTTAGGCCAAT  798

seq1  AAAAATGTACCAGATAATAAGGCAA-AAGGAGATTGTTCAAACAAGTAAT  838
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAAAATGTACCAGATAATAAGGCAAGAAGGAGATTGTTCAAACAAGTAAT  848

seq1  ATTATGAAATATTGAAGAAATGATTTAATCTCATTTTCTGATGACACAAC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAATATTGAAGAAATGATTTAATCTCATTTTCTGATGACACAAC  898

seq1  TTTCTTTTGAAAATCCAAGAGAGGTTTTTTGTTTGTTTGTTTGTTTGGGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGAAAATCCAAGAGAGGTTTTTTGTTTGTTTGTTTGTTTGGGG  948

seq1  GAAAATATAGAGTTTAAAAAGATAATTTAAAACACTTATTTTGTTGATAT  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATAGAGTTTAAAAAGATAATTTAAAACACTTATTTTGTTGATAT  998

seq1  AAAAACAATATTTCAGTATTTGTGAAAAAGATAGTCCACAGGCCAATTAC  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATATTTCAGTATTTGTGAAAAAGATAGTCCACAGGCCAATTAC  1048

seq1  CTCCCACATAGAGGGTCCAATAAAAGGATCAAAGGGCATTCTGGATAGCA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACATAGAGGGTCCAATAAAAGGATCAAAGGGCATTCTGGATAGCA  1098

seq1  AAGGCTGAAAGAATTC  1104
      ||||||||||||||||
seq2  AAGGCTGAAAGAATTC  1114