BAC Information

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BAC

Clone NameB6Ng01-209J15
Chromosome19 (Build37)
Map Location 19,255,506 - 19,368,581
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383440, Ostf1, LOC666712, BC016495, LOC100042193, 2410127L17Rik, LOC100042184, D030056L22Rik, Trpm6, Rorb
Downstream geneLOC100042218, LOC100041541
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J15.bB6Ng01-209J15.g
ACCGA028177GA028178
length1,1141,013
definitionB6Ng01-209J15.b B6Ng01-209J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,255,506 - 19,256,619)(19,367,563 - 19,368,581)
sequence
gaattctctgtttagttctataacactccccccccctttaaaaaaaaaaa
ggtttattgaaattcatcataaagccattcaggtgggacctctcctcatt
ggatgatattctatttgtaatcaatctcattatagtgaatctgtgtaact
ttaactttttcttatggttcaattttggcagtcatatcttcccacaaaaa
tatccatttcacctagggctttctctaacactgttacaatacacagattt
tcataatgctaatcaatacaaaaattcatttttaagcatagaggtcaaac
ccagtcctttgtgcaagatcgttaaatactctactgctgagtggtactac
agttttctattcgtcattagtagctcagttagtttcttacgatattgcta
ttttctttgattttatttactttagcattctatttattctcaatcttaaa
atttaattttgtttcagataactcatactttgttgaattgattgttccat
atttcatttatttttactctgatctctgctattttttttctctaaatgct
atgagtggacagtgaggtgtgaaataagaaccatagagtactgctttctg
gctttgtttccttacacaacccagagacacttgtccatggtaggttgttt
gatttcttggtggatagcttcttaagttctttatatatttggatattagc
cctcaatcggatgtggggttagtgaagatcttttccaatctgtaggttgt
gaatttgtcctactgactatgtcctttgccttatagaagttttccagtct
catgaagtcccacatatcaattcttgatcttagagcctgagccattagag
ttctctttaggaaatttctccctgtcctaatgagtttgaggctctttccc
actttctctcctattagattcagtgtatcttgctttatgttgaggtcctt
gatccacttgtacttgagcttcgttcaagttgacaaatatgggatctatt
agtgatcagggaaattcaagttaaaacacctagatcctaccttacagcaa
tcagatggcctaagatcaaaacctcaggtggcagcagaatgctgacagat
ggtgtggagaaaaa

gaattctcttccagaatattgtgcctgggaggctatccatgctccagaag
atggtcctacatccatacatatactgtaagcacaagcaattcagtaggtt
taaaagaattatgaagagaattgtgaaactgggaagaaataatggtgagt
ggtataggggaggaccttgtgggaggtaatacagggtagacgaaatcaaa
atgttatacattgtggacataattctccaaaagtatttttgaaaagaaaa
ttaatttcttccctttggttttaagtacccagaaatttattcattcataa
atttttatatcatttaaggacatttatgtgggtataaaacatggattgaa
ccataataagaattcatactataccttctcatgggtcccattgacttctc
aatataaaactgagatttggctgggcagtggtggcgcacacctttaatcc
cagaacttgggaggcagagataggcagatttctgagtttgaggccatcct
ggtctactgagtgagttccaggacagccagtgctacagagagaaaccttg
tgttgaaaacaaaataaaacaaaacaaaacaaaaacaccctgagatatga
agggaaaatatgtaacaacaagaatagatgtatttcagaaaagttctctt
tcttgagaataaaagctgacaaatacataaagactgtagctagctgtttt
gagcccagtgattcccaagaatccgctgcttggcccttgaccttctcttt
ccaaagggaagatccttgagaagtaagtgcatcacagggcacctccagct
gcgaacatatttgctccccctatggtgtctcctgcctccaaaattggcaa
acttgaaaatgcttctttttgacagtggttatctagtcagatcaattttt
gcccaggataagaaaagatattaaaaaaggaccagatttcacatgggaga
tagaaatcatgccagagtcccagagcaaattatgcttggattacagtcag
catggccacagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_19255506_19256619
seq2: B6Ng01-209J15.b_44_1157

seq1  GAATTCTCTGTTTAGTTCTATAACACTCCCCCCCCCTTTAAAAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTAGTTCTATAACACTCCCCCCCCCTTTAAAAAAAAAAA  50

seq1  GGTTTATTGAAATTCATCATAAAGCCATTCAGGTGGGACCTCTCCTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATTGAAATTCATCATAAAGCCATTCAGGTGGGACCTCTCCTCATT  100

seq1  GGATGATATTCTATTTGTAATCAATCTCATTATAGTGAATCTGTGTAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATATTCTATTTGTAATCAATCTCATTATAGTGAATCTGTGTAACT  150

seq1  TTAACTTTTTCTTATGGTTCAATTTTGGCAGTCATATCTTCCCACAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTTCTTATGGTTCAATTTTGGCAGTCATATCTTCCCACAAAAA  200

seq1  TATCCATTTCACCTAGGGCTTTCTCTAACACTGTTACAATACACAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTTCACCTAGGGCTTTCTCTAACACTGTTACAATACACAGATTT  250

seq1  TCATAATGCTAATCAATACAAAAATTCATTTTTAAGCATAGAGGTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGCTAATCAATACAAAAATTCATTTTTAAGCATAGAGGTCAAAC  300

seq1  CCAGTCCTTTGTGCAAGATCGTTAAATACTCTACTGCTGAGTGGTACTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTTTGTGCAAGATCGTTAAATACTCTACTGCTGAGTGGTACTAC  350

seq1  AGTTTTCTATTCGTCATTAGTAGCTCAGTTAGTTTCTTACGATATTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTATTCGTCATTAGTAGCTCAGTTAGTTTCTTACGATATTGCTA  400

seq1  TTTTCTTTGATTTTATTTACTTTAGCATTCTATTTATTCTCAATCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGATTTTATTTACTTTAGCATTCTATTTATTCTCAATCTTAAA  450

seq1  ATTTAATTTTGTTTCAGATAACTCATACTTTGTTGAATTGATTGTTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTGTTTCAGATAACTCATACTTTGTTGAATTGATTGTTCCAT  500

seq1  ATTTCATTTATTTTTACTCTGATCTCTGCTATTTTTTTTCTCTAAATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTTATTTTTACTCTGATCTCTGCTATTTTTTTTCTCTAAATGCT  550

seq1  ATGAGTGGACAGTGAGGTGTGAAATAAGAACCATAGAGTACTGCTTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGACAGTGAGGTGTGAAATAAGAACCATAGAGTACTGCTTTCTG  600

seq1  GCTTTGTTTCCTTACACAACCCAGAGACACTTGTCCATGGTAGGTTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTCCTTACACAACCCAGAGACACTTGTCCATGGTAGGTTGTTT  650

seq1  GATTTCTTGGTGGATAGCTTCTTAAGTTCTTTATATATTTGGATATTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTGGTGGATAGCTTCTTAAGTTCTTTATATATTTGGATATTAGC  700

seq1  CCTCAATCGGATGTGGGGTTAGTGAAGATCTTTTCCAATCTGTAGGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAATCGGATGTGGGGTTAGTGAAGATCTTTTCCAATCTGTAGGTTGT  750

seq1  GAATTTGTCCTACTGACTATGTCCTTTGCCTTATAGAAGTTTTCCAGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTCCTACTGACTATGTCCTTTGCCTTATAGAAGTTTTCCAGTCT  800

seq1  CATGAAGTCCCACATATCAATTCTTGATCTTAGAGCCTGAGCCATTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTCCCACATATCAATTCTTGATCTTAGAGCCTGAGCCATTAGAG  850

seq1  TTCTCTTTAGGAAATTTCTCCCTGTCCTAATGAGTTTGAGGCTCTTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTAGGAAATTTCTCCCTGTCCTAATGAGTTTGAGGCTCTTTCCC  900

seq1  ACTTTCTCTCCTATTAGATTCAGTGTATCTTGCTTTATGTTGAGGTCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTCCTATTAGATTCAGTGTATCTTGCTTTATGTTGAGGTCCTT  950

seq1  GATCCACTTGTACTTGAGCTTCGTTCAAGGTGACAAATAT-GGATCTATT  999
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GATCCACTTGTACTTGAGCTTCGTTCAAGTTGACAAATATGGGATCTATT  1000

seq1  AGTGATCAGGGAAATTCAAGTTAAAACAACCCTAAGATCCTACCTTACAG  1049
      ||||||||||||||||||||||||||||  ||| ||||||||||||||||
seq2  AGTGATCAGGGAAATTCAAGTTAAAACA--CCT-AGATCCTACCTTACAG  1047

seq1  CAATCAGAATGGCTAAGATCAAAACCTCAGGTGGCAGCAG-ATGCTGACA  1098
      ||||||||  | |||||||||||||||||||||||||||| |||||||||
seq2  CAATCAGATGGCCTAAGATCAAAACCTCAGGTGGCAGCAGAATGCTGACA  1097

seq1  -AGGATGTGGAGAAAAA  1114
       | | ||||||||||||
seq2  GATGGTGTGGAGAAAAA  1114


seq1: chr19_19367563_19368581
seq2: B6Ng01-209J15.g_65_1077 (reverse)

seq1  TGCTGTTGGCCATGCTGACTGTAATCCAAGCTTTATTTGCTCTTGGACTC  50
      ||||| ||||||||||||||||||||||||| | ||||||||| ||||||
seq2  TGCTG-TGGCCATGCTGACTGTAATCCAAGCATAATTTGCTCTGGGACTC  49

seq1  TGGCATGATTTTCTATCTCCCATGTGAAATTCTTGTCCTTTTTTTAATAT  100
      |||||||| |||||||||||||||||||| ||| |||| |||||||||||
seq2  TGGCATGA-TTTCTATCTCCCATGTGAAA-TCTGGTCC-TTTTTTAATAT  96

seq1  CTTTTCTTATCCTGGGCAAAAATTTGATCTGACTAGATAACCACTGTCAA  150
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTTTCTTATCCTGGGCAAAAA-TTGATCTGACTAGATAACCACTGTCAA  145

seq1  AAAGAAGCATTTTCAAATTTGCCAATTTTGGAGGCAGGAGACACCATAGG  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGAAGCATTTTCAAGTTTGCCAATTTTGGAGGCAGGAGACACCATAGG  195

seq1  GGGAGCAAATATGTTCGCAGCTGGAGGTGCCCTGTGATGCACTTACTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCAAATATGTTCGCAGCTGGAGGTGCCCTGTGATGCACTTACTTCT  245

seq1  CAAGGATCTTCCCTTTGGAAAGAGAAGGTCAAGGGCCAAGCAGCGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATCTTCCCTTTGGAAAGAGAAGGTCAAGGGCCAAGCAGCGGATTC  295

seq1  TTGGGAATCACTGGGCTCAAAACAGCTAGCTACAGTCTTTATGTATTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATCACTGGGCTCAAAACAGCTAGCTACAGTCTTTATGTATTTGT  345

seq1  CAGCTTTTATTTCTCAAGAAAGAGAACTTTTCTGAAATACATCTATTCTT  400
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTA-TTCTCAAGAAAGAGAACTTTTCTGAAATACATCTATTCTT  394

seq1  GTTGTTACATATTTTCCCTTCATATCTCAGGGTGTTTTTGTTTTGTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTACATATTTTCCCTTCATATCTCAGGGTGTTTTTGTTTTGTTTTG  444

seq1  TTTTATTTTGTTTTCAACACAAGGTTTCTCTCTGTAGCACTGGCTGTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTGTTTTCAACACAAGGTTTCTCTCTGTAGCACTGGCTGTCCT  494

seq1  GGAACTCACTCAGTAGACCAGGATGGCCTCAAACTCAGAAATCTGCCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCACTCAGTAGACCAGGATGGCCTCAAACTCAGAAATCTGCCTAT  544

seq1  CTCTGCCTCCCAAGTTCTGGGATTAAAGGTGTGCGCCACCACTGCCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCCAAGTTCTGGGATTAAAGGTGTGCGCCACCACTGCCCAGC  594

seq1  CAAATCTCAGTTTTATATTGAGAAGTCAATGGGACCCATGAGAAGGTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCTCAGTTTTATATTGAGAAGTCAATGGGACCCATGAGAAGGTATA  644

seq1  GTATGAATTCTTATTATGGTTCAATCCATGTTTTATACCCACATAAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAATTCTTATTATGGTTCAATCCATGTTTTATACCCACATAAATGT  694

seq1  CCTTAAATGATATAAAAATTTATGAATGAATAAATTTCTGGGTACTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATGATATAAAAATTTATGAATGAATAAATTTCTGGGTACTTAAA  744

seq1  ACCAAAGGGAAGAAATTAATTTTCTTTTCAAAAATACTTTTGGAGAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGGAAGAAATTAATTTTCTTTTCAAAAATACTTTTGGAGAATTA  794

seq1  TGTCCACAATGTATAACATTTTGATTTCGTCTACCCTGTATTACCTCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACAATGTATAACATTTTGATTTCGTCTACCCTGTATTACCTCCCA  844

seq1  CAAGGTCCTCCCCTATACCACTCACCATTATTTCTTCCCAGTTTCACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCTCCCCTATACCACTCACCATTATTTCTTCCCAGTTTCACAAT  894

seq1  TCTCTTCATAATTCTTTTAAACCTACTGAATTGCTTGTGCTTACAGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATAATTCTTTTAAACCTACTGAATTGCTTGTGCTTACAGTATA  944

seq1  TGTATGGATGTAGGACCATCTTCTGGAGCATGGATAGCCTCCCAGGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATGTAGGACCATCTTCTGGAGCATGGATAGCCTCCCAGGCACA  994

seq1  ATATTCTGGAAGAGAATTC  1019
      |||||||||||||||||||
seq2  ATATTCTGGAAGAGAATTC  1013


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