BAC Information

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BAC

Clone NameB6Ng01-212E01
Chromosome19 (Build37)
Map Location 53,014,097 - 53,201,185
singlet/doubletdoublet
Overlap geneXpnpep1, LOC668545
Upstream geneLOC100042936, Ins1, LOC100043450
Downstream geneLOC674277, Add3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212E01.bB6Ng01-212E01.g
ACCGA030095GA030096
length6361,124
definitionB6Ng01-212E01.b B6Ng01-212E01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,200,550 - 53,201,185)(53,014,097 - 53,015,219)
sequence
gaattcttacagggtatgcctcaggttgggctctgcttctatatcctggg
aactctccagctctcctcttttcctatgccacagccttaagttgatcaag
actttggttattgtgatggattggaatccagaacactgaaaaggaaggaa
tgatacaagatggtcttgtctcagatcctctcttgtgtttttatttctgg
gaaagagagaagcagaagaaaagtgtacagcccaggacaaccagcatctg
ctacaaataaactaacaaaggagccagcatctttacacttatgtgtgtat
atagatgtgtggttacatatatgttaaaaatgtgcctgtaaatttggagg
cttgggtctgctagtggatagttgagtagacaagtcaccaaagttctgtg
ccagttttctgtgagcttgagaaaaatctcttcattattctgtatgtctc
tttctttctgtataaaatagatatggaaggaagagggtgtgaaagtttat
tgatccagtatcaactacagaatttcatctctatgttattttcttaactt
gccccatttttagttttttttgttttgttttgttttgttttggttattgt
tgctttacataagatctcatgaaagccagattggtc
gaattctttaacttgtgatgaaatcagcaataactacacaaagagattca
ctgcttgtctgtgcctaagtccatcagaaaatagaaccaagggaaaggtc
tattacagcaaattgccttcagctatcaagaagcagcctgggctaggcat
ggtggcacaggcctttaaccagcactcgggaggtagaggcaggtatgtgt
ctacaaattcaagggcagccagggctacatagtaagaccctgtctcaaca
acaacagtgtccacctctcattgtctgttctaggctgctcatcttagcat
caaagaggagatgctctggaaataaggaggaaattctggtaatgttccat
gattttgaaaaaaaaagtcttatacagagattttcttcagtgattacata
tactttttatgtgcactgatgttttgcctgtatgtatgtctggatgaaag
tgtcagatatcgaagtaacagacagttgtgagctgccctattggtgctgg
gaattgaacctgggtcctctgcaagagcattcagtgctcttaaccactga
tctatctttccaaccccattcacatatactttcttccaacaactaaagat
ttagctctcaaatagcacttgcctccccattataaattcattgtcaattt
tctttggtctatttattatgttttttacgtacagccttacagagtactac
agaggtctcatcagactcaaaattcataatacataagcactgtcacatgg
gggcaagtcactgttccctgccaacatactaggtctgtgtttacagtcga
cactacaaggaatagcccttgtggtgctctatctacactgacagtgtcta
atcgacagatagttgactttttcccacacagccagtgggaaaccatccat
tgtgcctcgtccctggaacacttgacctcaaaagctctttaaccagtatc
cgcaggctttctcttcatcttgggcatgctaagtgcatgttgccaaagtt
ctgaagctcaaagaccggagagatttccctcagtgccacaagggtgattc
aaggtagccagcctaagatgcattccagatctgtctccaaacccctgaat
tccttacatccttttttataatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_53200550_53201185
seq2: B6Ng01-212E01.b_46_681 (reverse)

seq1  GACCAATCTGGCTTTCATGAGATCTTATGTAAAGCAACAATAACCAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATCTGGCTTTCATGAGATCTTATGTAAAGCAACAATAACCAAAAC  50

seq1  AAAACAAAACAAAACAAAAAAAACTAAAAATGGGGCAAGTTAAGAAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAAAAAACTAAAAATGGGGCAAGTTAAGAAAATA  100

seq1  ACATAGAGATGAAATTCTGTAGTTGATACTGGATCAATAAACTTTCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGATGAAATTCTGTAGTTGATACTGGATCAATAAACTTTCACAC  150

seq1  CCTCTTCCTTCCATATCTATTTTATACAGAAAGAAAGAGACATACAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTTCCATATCTATTTTATACAGAAAGAAAGAGACATACAGAAT  200

seq1  AATGAAGAGATTTTTCTCAAGCTCACAGAAAACTGGCACAGAACTTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAGATTTTTCTCAAGCTCACAGAAAACTGGCACAGAACTTTGGT  250

seq1  GACTTGTCTACTCAACTATCCACTAGCAGACCCAAGCCTCCAAATTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTCTACTCAACTATCCACTAGCAGACCCAAGCCTCCAAATTTACA  300

seq1  GGCACATTTTTAACATATATGTAACCACACATCTATATACACACATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATTTTTAACATATATGTAACCACACATCTATATACACACATAAGT  350

seq1  GTAAAGATGCTGGCTCCTTTGTTAGTTTATTTGTAGCAGATGCTGGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATGCTGGCTCCTTTGTTAGTTTATTTGTAGCAGATGCTGGTTGT  400

seq1  CCTGGGCTGTACACTTTTCTTCTGCTTCTCTCTTTCCCAGAAATAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGCTGTACACTTTTCTTCTGCTTCTCTCTTTCCCAGAAATAAAAAC  450

seq1  ACAAGAGAGGATCTGAGACAAGACCATCTTGTATCATTCCTTCCTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGGATCTGAGACAAGACCATCTTGTATCATTCCTTCCTTTTCA  500

seq1  GTGTTCTGGATTCCAATCCATCACAATAACCAAAGTCTTGATCAACTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGATTCCAATCCATCACAATAACCAAAGTCTTGATCAACTTAA  550

seq1  GGCTGTGGCATAGGAAAAGAGGAGAGCTGGAGAGTTCCCAGGATATAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGGCATAGGAAAAGAGGAGAGCTGGAGAGTTCCCAGGATATAGAA  600

seq1  GCAGAGCCCAACCTGAGGCATACCCTGTAAGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCCCAACCTGAGGCATACCCTGTAAGAATTC  636

seq1: chr19_53014097_53015219
seq2: B6Ng01-212E01.g_67_1190

seq1  GAATTCTTTAACTTGTGATGAAATCAGCAATAACTACACAAAGAGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACTTGTGATGAAATCAGCAATAACTACACAAAGAGATTCA  50

seq1  CTGCTTGTCTGTGCCTAAGTCCATCAGAAAATAGAACCAAGGGAAAGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGTCTGTGCCTAAGTCCATCAGAAAATAGAACCAAGGGAAAGGTC  100

seq1  TATTACAGCAAATTGCCTTCAGCTATCAAGAAGCAGCCTGGGCTAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAGCAAATTGCCTTCAGCTATCAAGAAGCAGCCTGGGCTAGGCAT  150

seq1  GGTGGCACAGGCCTTTAACCAGCACTCGGGAGGTAGAGGCAGGTATGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACAGGCCTTTAACCAGCACTCGGGAGGTAGAGGCAGGTATGTGT  200

seq1  CTACAAATTCAAGGGCAGCCAGGGCTACATAGTAAGACCCTGTCTCAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATTCAAGGGCAGCCAGGGCTACATAGTAAGACCCTGTCTCAACA  250

seq1  ACAACAGTGTCCACCTCTCATTGTCTGTTCTAGGCTGCTCATCTTAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTGTCCACCTCTCATTGTCTGTTCTAGGCTGCTCATCTTAGCAT  300

seq1  CAAAGAGGAGATGCTCTGGAAATAAGGAGGAAATTCTGGTAATGTTCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGGAGATGCTCTGGAAATAAGGAGGAAATTCTGGTAATGTTCCAT  350

seq1  GATTTTGAAAAAAAAAGTCTTATACAGAGATTTTCTTCAGTGATTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAAAAAAAAAGTCTTATACAGAGATTTTCTTCAGTGATTACATA  400

seq1  TACTTTTTATGTGCACTGATGTTTTGCCTGTATGTATGTCTGGATGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTTATGTGCACTGATGTTTTGCCTGTATGTATGTCTGGATGAAAG  450

seq1  TGTCAGATATCGAAGTAACAGACAGTTGTGAGCTGCCCTATTGGTGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATATCGAAGTAACAGACAGTTGTGAGCTGCCCTATTGGTGCTGG  500

seq1  GAATTGAACCTGGGTCCTCTGCAAGAGCATTCAGTGCTCTTAACCACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAACCTGGGTCCTCTGCAAGAGCATTCAGTGCTCTTAACCACTGA  550

seq1  TCTATCTTTCCAACCCCATTCACATATACTTTCTTCCAACAACTAAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTTTCCAACCCCATTCACATATACTTTCTTCCAACAACTAAAGAT  600

seq1  TTAGCTCTCAAATAGCACTTGCCTCCCCATTATAAATTCATTGTCAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTCAAATAGCACTTGCCTCCCCATTATAAATTCATTGTCAATTT  650

seq1  TCTTTGGTCTATTTATTATG-TTTTTACGTACAGCCTTACAGAGTACTAC  699
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTTGGTCTATTTATTATGTTTTTTACGTACAGCCTTACAGAGTACTAC  700

seq1  AGAGGTCTCATCAGACTCAAAATTCATAATACATAAGCACTGTCACATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTCATCAGACTCAAAATTCATAATACATAAGCACTGTCACATGG  750

seq1  GGGCAAGTCACTGTTCCCTGCCAACATACTAGGTCTGTGTTTACAGTCGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGTCACTGTTCCCTGCCAACATACTAGGTCTGTGTTTACAGTCGA  800

seq1  CACTACAAGGAATAG-CCTTGTGGTGCTCTATCTACACTGACAGTGTCTA  848
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACTACAAGGAATAGCCCTTGTGGTGCTCTATCTACACTGACAGTGTCTA  850

seq1  ATCGACAGATAGTTGAC-TTTTCCCACACAGCCAGTGGGAAACCCATCCA  897
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  ATCGACAGATAGTTGACTTTTTCCCACACAGCCAGTGGGAAA-CCATCCA  899

seq1  TTGTGCCTCGTCCCTGGAGCACGTGACCCTCAAAAGCTCTTTAACCAGTA  947
      |||||||||||||||||| ||| ||| |||||||||||||||||||||||
seq2  TTGTGCCTCGTCCCTGGAACACTTGA-CCTCAAAAGCTCTTTAACCAGTA  948

seq1  TCCGCAGGCTTTCTCTTCATCTTGGGCATGGCTAAGTGCATGTTGCAGAG  997
      ||||||||||||||||||||||||||||| ||||||||||||||||  | 
seq2  TCCGCAGGCTTTCTCTTCATCTTGGGCAT-GCTAAGTGCATGTTGCCAAA  997

seq1  GTTCTGAAGCTCAAAGACAGAAGAAGAATTCCCTCAGTGGCACAAGGTTG  1047
      |||||||||||||||||| | || ||| ||||||||||| ||||||| ||
seq2  GTTCTGAAGCTCAAAGACCGGAG-AGATTTCCCTCAGTGCCACAAGGGTG  1046

seq1  AT--CAGGTAG-CAGGCTAGGATGCAATCCAAGATCTGTCTCCAAACCCC  1094
      ||   |||||| ||| ||| |||||| ||| |||||||||||||||||||
seq2  ATTCAAGGTAGCCAGCCTAAGATGCATTCC-AGATCTGTCTCCAAACCCC  1095

seq1  TGAATTCTTCATTTCTTTTTTTTTAATTA  1123
      ||||||| | |  || |||||| ||||||
seq2  TGAATTCCTTACATCCTTTTTTATAATTA  1124