BAC Information

Click to search

BAC

Clone NameB6Ng01-212J17
Chromosome19 (Build37)
Map Location 30,016,897 - 30,018,021
singlet/doubletsinglet
Overlap genenone
Upstream gene4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
Downstream geneIl33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1, LOC625995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212J17.bB6Ng01-212J17.g
ACCGA030360GA030361
length1,1941,117
definitionB6Ng01-212J17.b B6Ng01-212J17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagaccttcaaagaagacctgataccaattttcctcaaact
attccataaaagaaacagaaggaacactacctaactcattttatgaagcc
acaattactctgatacctaaaccacacaaggacccaaccaaaaaagagaa
ctttagaccaatttcgcttatgaatatcgatgcaaaaatactcaataaaa
ttcttgcaaaccgaattcaagaacacatcaaaaccattatttacaatgat
caaaccttgcaccccaaggatgcaaggttggtttaatataggaaaatcca
tgaacataatccaccatataaacaaactcaaaaaaaaatcacatgaccat
cttctcagatgctgaaaaagcatttgacaaaatatcacaccccttcatgt
taaaagtactggagagatcaggaattcaaggcccatacccaaacataata
aaagcaatttactggaagccaataatcaatatcaaattaaatggagacat
tcttgaagcaatcctactgaaatcagggacaagacaatgatgcccattct
ccccatatctattcaatatagtactcaaagtgttagctagaacaataaga
caacaaaaggagataaaagggatacaaattggtaaagaagaaataaaggt
atcactatttgcagatgacatgatagtatacataagcaactccaaaaatt
ctaccagagaatttctccagttgataaacaacttcagcaaagtggctgga
tataaaattaactcaaataaatcagtagccttcctttatacaaaggataa
acaggctcagaaagaaattagggaaacaactcctttcacaatagccacaa
atagtataaaatatcttggggtaactctaaccaaacaagtgaaagacctg
tatgacaataacttcaagtctctcaagaaataaatcaaagaagatcgcag
aaaatggagagatctcccatgctcatggattggcaggattaacacagtta
aaatggctatcctaccaaaggtaatctatagagtcaatgcatccccatca
aatccaacacaattcttcaaagacatgaagagcaattctcggatttatct
gaaaggcaagatcagaatagcgaacactgatactgttactattggctttt
gaacagttccttgatgactgctgtcctagaactcactctggtga
gaattctccatgtagactaggctggtcttgaactcacagggattgattca
tctacctctgcctccaagtgctgagattaaagtgcatataccaccatgcc
tggctgatagcaggaagcttttaacgtgttaaacattcactgtactttgt
gattttctgactctgtgatgtgccatccaaagaaaaagagtaaagaaaac
cagtttgatgtccaattgaaatcccagataaaatatgctgagaaaagagc
tggggtcacatttgaggggtcagtacagcgtgtatacggttgaatgtggg
ccatccacacacttcaaagagctcttgtgtgtcagcgtgagaaacatcat
agttccaagtctcaaacacaaaaagtgtgagctgtcatcttttccaaagt
actaatgtgtatggcggcctctttggcctttaggaagttacgttaagtaa
atattgaattggcattttaggtcagggacgtccatcggcatgagcccatg
ggacaccgcgtgaagattttcttttcagtttggtgtattttctacatctg
gtcaaccagcaagtcctttatcgagacacccctgtcctcctaggtgtcag
gcaattctcttcgatgatcagagctgttgatatgccatcagaatgtcggt
ttggctactgacttttctttccttagtgagactctttgaaaactttgtga
aggaacttggaaaagatagataatatcgaaaagacctctgaccctagaga
aagtaattaagtggtttggaaatcattacaaggaaatctaacttctctga
ggtctcttgaggtcatagcagtgataggcttgagtctgtgtacagagggc
tgtctaatgatgacgccaatgagtcagacagcttgctgctaggctaggtg
ctgggaagcagtggtgaactcagtcaaaatcctgccttctgaagcttact
cgacactggcaggcggctgttgagtaatattcaggcaatacattcttccc
ggatcactgacgtcagactcagaaaggagctgtgctgaagaaggcagtcc
actatgtcaaagttcttcacaaagtgcagtaatcttgggggtggggcaga
acgtccttctgttgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_30016897_30018021
seq2: B6Ng01-212J17.g_66_1182 (reverse)

seq1  TTGC-ACAGAAGGCGTTTCTGCCCCACCCCC-AGATTCCTTGCACTTTGT  48
      |||| ||||||||   ||||||||||||||| ||||| | ||||||||||
seq2  TTGCAACAGAAGGACGTTCTGCCCCACCCCCAAGATTAC-TGCACTTTGT  49

seq1  GGAAGGACCTTTGACATTAAGTTGGGACTGCCCTTCCTCAGCACCAGCTC  98
      |  | || |||||||||  |||  |||||| ||||| |||||| ||||||
seq2  G--AAGAACTTTGACAT--AGT--GGACTG-CCTTCTTCAGCA-CAGCTC  91

seq1  CTTTCTGGGTTCCTGACGTCAGTG-TTCGGGAAGATTGTATTTGCCTGAA  147
      ||||||| ||  |||||||||||| | |||||||| |||| |||||||||
seq2  CTTTCTGAGT--CTGACGTCAGTGATCCGGGAAGAATGTA-TTGCCTGAA  138

seq1  TATTACTCAACAGCCGCCTGCCAGTGTCGAGTAAGCTTCAGAAGGCAGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTCAACAGCCGCCTGCCAGTGTCGAGTAAGCTTCAGAAGGCAGGA  188

seq1  TTTTGACTG-GTTCACCACTGCTTCCCAGCACCTAGCCTAGCAGCAAGCT  246
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACTGAGTTCACCACTGCTTCCCAGCACCTAGCCTAGCAGCAAGCT  238

seq1  GTCTGACTCATTGGCGTCATCATTAGACAGCCCTCTGTACACAGACTCAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGACTCATTGGCGTCATCATTAGACAGCCCTCTGTACACAGACTCAA  288

seq1  GCCTATCACTGCTATGACCTCAAGAGACCTCAGAGAAGTTAGATTTCCTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATCACTGCTATGACCTCAAGAGACCTCAGAGAAGTTAGATTTCCTT  338

seq1  GTAATGATTTCCAAACCACTTAATTACTTTCTCTAGGGTCAGAGGTCTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGATTTCCAAACCACTTAATTACTTTCTCTAGGGTCAGAGGTCTTT  388

seq1  TCGATATTATCTATCTTTTCCAAGTTCCTTCACAAAGTTTTCAAAGAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATATTATCTATCTTTTCCAAGTTCCTTCACAAAGTTTTCAAAGAGTC  438

seq1  TCACTAAGGAAAGAAAAGTCAGTAGCCAAACCGACATTCTGATGGCATAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAGGAAAGAAAAGTCAGTAGCCAAACCGACATTCTGATGGCATAT  488

seq1  CAACAGCTCTGATCATCGAAGAGAATTGCCTGACACCTAGGAGGACAGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTCTGATCATCGAAGAGAATTGCCTGACACCTAGGAGGACAGGG  538

seq1  GTGTCTCGATAAAGGACTTGCTGGTTGACCAGATGTAGAAAATACACCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCGATAAAGGACTTGCTGGTTGACCAGATGTAGAAAATACACCAA  588

seq1  ACTGAAAAGAAAATCTTCACGCGGTGTCCCATGGGCTCATGCCGATGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGAAAATCTTCACGCGGTGTCCCATGGGCTCATGCCGATGGAC  638

seq1  GTCCCTGACCTAAAATGCCAATTCAATATTTACTTAACGTAACTTCCTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGACCTAAAATGCCAATTCAATATTTACTTAACGTAACTTCCTAA  688

seq1  AGGCCAAAGAGGCCGCCATACACATTAGTACTTTGGAAAAGATGACAGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAAGAGGCCGCCATACACATTAGTACTTTGGAAAAGATGACAGCT  738

seq1  CACACTTTTTGTGTTTGAGACTTGGAACTATGATGTTTCTCACGCTGACA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTTTGTGTTTGAGACTTGGAACTATGATGTTTCTCACGCTGACA  788

seq1  CACAAGAGCTCTTTGAAGTGTGTGGATGGCCCACATTCAACCGTATACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGCTCTTTGAAGTGTGTGGATGGCCCACATTCAACCGTATACAC  838

seq1  GCTGTACTGACCCCTCAAATGTGACCCCAGCTCTTTTCTCAGCATATTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTACTGACCCCTCAAATGTGACCCCAGCTCTTTTCTCAGCATATTTT  888

seq1  ATCTGGGATTTCAATTGGACATCAAACTGGTTTTCTTTACTCTTTTTCTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGATTTCAATTGGACATCAAACTGGTTTTCTTTACTCTTTTTCTT  938

seq1  TGGATGGCACATCACAGAGTCAGAAAATCACAAAGTACAGTGAATGTTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGCACATCACAGAGTCAGAAAATCACAAAGTACAGTGAATGTTTA  988

seq1  ACACGTTAAAAGCTTCCTGCTATCAGCCAGGCATGGTGGTATATGCACTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTTAAAAGCTTCCTGCTATCAGCCAGGCATGGTGGTATATGCACTT  1038

seq1  TAATCTCAGCACTTGGAGGCAGAGGTAGATGAATCAATCCCTGTGAGTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCAGCACTTGGAGGCAGAGGTAGATGAATCAATCCCTGTGAGTTC  1088

seq1  AAGACCAGCCTAGTCTACATGGAGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  AAGACCAGCCTAGTCTACATGGAGAATTC  1117