BAC Information

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BAC

Clone NameB6Ng01-213H19
Chromosome19 (Build37)13 (Build37)
Map Location 9,990,798 - 9,990,84982,860,668 - 82,861,800
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGanab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp
Downstream geneLOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213H19.bB6Ng01-213H19.g
ACCGA031002GA031003
length1,0071,131
definitionB6Ng01-213H19.b B6Ng01-213H19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,990,798 - 9,990,849)(82,860,668 - 82,861,800)
sequence
gaattcaaggcccattcctaaacatagtaaaagtgatataaagcaaacca
ggagccaacatgaagctaaatggagagaaacttgaagcaatcccactaaa
attggggactagacaaggctgcctactctctccctacctatttattcaat
atagtactcaaagtcctagtcagagcaattagacaagaaaaggagatcaa
agggatacaaattggaaaggaagaagtcaaaatatcatgatttgcagatg
atatgatagtatacttaagtgaccccaaaaattccaccacagaactccta
aacctgattaacaacatcattaaagtagctggatataaaattaactcaaa
caaatcagtggctttcctctactcaaaggataaacaggctgagaaagaaa
cttgggaaacaacacccttcacaatagtcacaaacattataaaatacctt
ggtgtgactctacgtaagtaagtgaaagatctatatgacaagaacgtcaa
gtcttgaagaaagaaatcgaggaagatcttagaagctggaaagatctccc
aggctcatggattggcaggattaacatagtaaaaatggacatcttgctga
aagcaatttccatcaaaactagaactcaatatttcatggagttagaaaaa
gaaattttcaaattcatctggaataacaaaaaacttaggatagtgaaaac
tattcccaacaataaaagaacttctggtgaaatcactatccctgacttca
agctgtactacagagcaattgtgataaaaaaaaaacaacaaacaaacaaa
caaacaaaaaacctgtatggtattggtacagtgacaggcagatagatcaa
tgaaataaaattgaagatccagaaaattaactcacacacctatggtcact
atctttgacatagaaagctcaaaccatccagtggaaaaaagacagcattt
ttcaacaatggtgctcgttcaactggtggttagcatgcagaaaaaaatgc
aatttga
gaattcctgtatcacattgatgccaaagacactgttgtttttaaagtgca
tcagctaggacatcacaaaagtaccactttccaaattgctatgggtagca
gcaagacaatcaaaggcatcattctaaattgacttttacattgcgagaaa
tttactgatctaaaaatttaccaagagggagaccagcacatctgccccta
tagaaatgatttttgcatagtaagtgttgatctgcataaccacatgatgg
ttgcaagtgctgattaccaaatctgaatcatcattacttagcaaagttct
ataaatacacatggcaccatgtaatatattcagctgcactaaattaatga
caaagtcctcatcccaaggagcttggggtctaaaactgaagaatggcaca
aaatacaaatatgcagaaaatacggcatacaagagaaattgtcagtgaaa
tagtttcagtggaaggtttttatggtttgaataaaatgataaattaaaaa
tttacataaaacttcatttttggattcatcatgctcgaaagtaagcattt
ctaaaataccaccttctgaattcttgggattatgtgtgtatgtgaataac
atatatattcttcattttttatatttaagaatgataaaatcagtatatcc
aaattgagttctttatcccttcatggtgttcatattttttacaatctgct
cctgaccacgaaagacattttcgagattctgtctgctcattatcttcccc
taccaaacaccaagtcctggtagttaccaaagatatggcaaactctccaa
tttcatctgatacgttctatctaagttccttcggatttctattaaaggaa
tactgttctttcctatctgtttgcattttagtttctcaccaacagtaact
ttgtgttagcttaccaagtcagtaggtatagctgtctattttctttctac
atttctctattgttgtacatctagcaaaaaaccatgttatctattataat
attcccacactccagagaaattaatttgttctctgatgcatatatcacat
tcaataaattgtcctgtctacgatagttctgtctggccattttcaaaaag
attattccccttaacgcactcagaacaagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9990798_9990849
seq2: B6Ng01-213H19.b_822_858 (reverse)

seq1  GTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGGGAGTTTTGTTAGTTTTT  50
      ||||||||||||||||||||||||||         ||||      |||||
seq2  GTTTTTTGTTTGTTTGTTTGTTTGTT---------GTTT------TTTTT  35

seq1  TT  52
      ||
seq2  TT  37

seq1: chr13_82860668_82861800
seq2: B6Ng01-213H19.g_69_1199

seq1  GAATTCCTGTATCACATTGATGCCAAAGACACTGTTGTTTTTAAAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTATCACATTGATGCCAAAGACACTGTTGTTTTTAAAGTGCA  50

seq1  TCAGCTAGGACATCACAAAAGTACCACTTTCCAAATTGCTATGGGTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGGACATCACAAAAGTACCACTTTCCAAATTGCTATGGGTAGCA  100

seq1  GCAAGACAATCAAAGGCATCATTCTAAATTGACTTTTACATTGCGAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACAATCAAAGGCATCATTCTAAATTGACTTTTACATTGCGAGAAA  150

seq1  TTTACTGATCTAAAAATTTACCAAGAGGGAGACCAGCACATCTGCCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGATCTAAAAATTTACCAAGAGGGAGACCAGCACATCTGCCCCTA  200

seq1  TAGAAATGATTTTTGCATAGTAAGTGTTGATCTGCATAACCACATGATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGATTTTTGCATAGTAAGTGTTGATCTGCATAACCACATGATGG  250

seq1  TTGCAAGTGCTGATTACCAAATCTGAATCATCATTACTTAGCAAAGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGTGCTGATTACCAAATCTGAATCATCATTACTTAGCAAAGTTCT  300

seq1  ATAAATACACATGGCACCATGTAATATATTCAGCTGCACTAAATTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACACATGGCACCATGTAATATATTCAGCTGCACTAAATTAATGA  350

seq1  CAAAGTCCTCATCCCAAGGAGCTTGGGGTCTAAAACTGAAGAATGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCCTCATCCCAAGGAGCTTGGGGTCTAAAACTGAAGAATGGCACA  400

seq1  AAATACAAATATGCAGAAAATACGGCATACAAGAGAAATTGTCAGTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAATATGCAGAAAATACGGCATACAAGAGAAATTGTCAGTGAAA  450

seq1  TAGTTTCAGTGGAAGGTTTTTATGGTTTGAATAAAATGATAAATTAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCAGTGGAAGGTTTTTATGGTTTGAATAAAATGATAAATTAAAAA  500

seq1  TTTACATAAAACTTCATTTTTGGATTCATCATGCTCGAAAGTAAGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAACTTCATTTTTGGATTCATCATGCTCGAAAGTAAGCATTT  550

seq1  CTAAAATACCACCTTCTGAATTCTTGGGATTATGTGTGTATGTGAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATACCACCTTCTGAATTCTTGGGATTATGTGTGTATGTGAATAAC  600

seq1  ATATATATTCTTCATTTTTTATATTTAAGAATGATAAAATCAGTATATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTCTTCATTTTTTATATTTAAGAATGATAAAATCAGTATATCC  650

seq1  AAATTGAGTTCTTTATCCCTTCATGGTGTTCATATTTTTTACAATCTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGTTCTTTATCCCTTCATGGTGTTCATATTTTTTACAATCTGCT  700

seq1  CCTGACCACGAAAGACATTTTCGAGATTCTGTCTGCTCATTATCTTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCACGAAAGACATTTTCGAGATTCTGTCTGCTCATTATCTTCCCC  750

seq1  TACCAAACACCAAGTCCTGGTAGTTACCAAAGATATGGCAAACTCTCCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACACCAAGTCCTGGTAGTTACCAAAGATATGGCAAACTCTCCAA  800

seq1  TTTCATCTGATACGTTCTATCTAAGTTCCTTCGGATTTCTATTAAAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCTGATACGTTCTATCTAAGTTCCTTCGGATTTCTATTAAAGGAA  850

seq1  TACTGTTCTTTCCTATCTGTTTGCATTTTAGTTTCTCACCAACAGTAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTCTTTCCTATCTGTTTGCATTTTAGTTTCTCACCAACAGTAACT  900

seq1  TTGTGTTAGCTTACCCAGTCAGTAGGTATAGCTGTCTATTTTCTTTCTAC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTGTGTTAGCTTACCAAGTCAGTAGGTATAGCTGTCTATTTTCTTTCTAC  950

seq1  A-TTCTCTATTGTTGTACATCTAGCAAAAAACCATG-TATCTA-TATAAT  997
      | |||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  ATTTCTCTATTGTTGTACATCTAGCAAAAAACCATGTTATCTATTATAAT  1000

seq1  ATTCCCAACACTCCAGAGAAATTAAATTTGTTCTCTGATGCATATATCAA  1047
      |||||| |||||||||||||||| |||||||||||||||||||||||| |
seq2  ATTCCC-ACACTCCAGAGAAATT-AATTTGTTCTCTGATGCATATATC-A  1047

seq1  CATTCAATAAAATTGTCCTGTCTTACGAATAGTTTCTGTCT-GCCA-TTT  1095
      |||||||| ||||||||||||| |||| |||| |||||||| |||| |||
seq2  CATTCAAT-AAATTGTCCTGTC-TACG-ATAG-TTCTGTCTGGCCATTTT  1093

seq1  CATAAAGATTA-TCCCCTTACACCACTCAGAACACAGCG  1133
      || |||||||| ||||||||   ||||||||||| ||||
seq2  CAAAAAGATTATTCCCCTTAACGCACTCAGAACA-AGCG  1131