BAC Information

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BAC

Clone NameB6Ng01-213O01
Chromosome19 (Build37)
Map Location 29,633,681 - 29,823,102
singlet/doubletdoublet
Overlap geneC030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2
Downstream geneRanbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O01.bB6Ng01-213O01.g
ACCGA031278GA031279
length1,132921
definitionB6Ng01-213O01.b B6Ng01-213O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,633,681 - 29,634,526)(29,822,182 - 29,823,102)
sequence
gaattcatcctgcattaaggaaagaaataagaagcacttctccttggagt
catgtaactaagagcaagtccagacttgcattttctgcgccatatttcct
ctgtctgtctgttttatgagtctgagtctctgcctgaatgctgtcttggg
actctgttttgaacctgtttgtctctatgtttcactctgtatgtgtccta
atgtgtacctgtctgatgtgtatgagtgtgtagtatctgtctgtctgtga
gcagtgtgactgtccataataatggacttttctctctgtttattgaacag
catagaaaatatcacatggagaaggaatgggatactttacagatatcttt
aacggagttttaaaagcattaggtcactgatttcaactgaccagatagca
aatgtcattgtttatcaaccagtaaccataaatggttgctttcaaccttt
atggtacattttaggaagtctttcaacttctgtatctgctgctttcagca
aagatacacctgcaatatctaagtcaagggcatggaacagtacctgatgt
aagaatgtagctatgcaatagcttaagttatacaagttgaatacataggc
aatccaagacaagtaaggatggttgttcagttgttctcttaaaggcaggt
aaaataaacagactctgagtaaacagtaggctagcagtcttaactcttag
gtgatgtcaagatatactattaacttgggctgtgaggagaaattctagtc
ttttagaatgttaagagatattctcagaatattatatcaccagaagaaag
aacatagaaaagggtaatgtttaaaaatgaccaaattttaatttatatac
acatgaaattatcaaaaacaaaagtgtactcagacacagtaacataaaat
tgtaatatatgcattttgagaggtggagacataatagcacaggttttaaa
ctgtcatgggtgcatagtgagatcacctcaactcacttcactcactcact
cactttctctctcttctctctcacacaccacacacacacacacacacaca
cacacacttcagggagggcaagcttttggaatacaagttaaaaaataact
tgaggctggaaagaatggctctggatttaaga
gaattctctgtcttatcagtttattttttataactttgcagtgctgggaa
tgaaatccaggtctttatgcatataccaggcatgtgttcaaccataaagc
tactccatcctcaaacccatgccatttttcagtccctcctattttttcct
cagcagaattaatattcatgtaacactattagccttatatattatttcac
ttactcataaacattccaaaagtagatggctactgttgtttttatgttat
gtatgcaagtgttctgcctgcttttatcaccacacatcacatgagtacct
gtgctggaggaagccagaagaggtgttagatccactggaactggacttga
agaggattgggagctattatgtgggtgctgagaactcaaccctgcacctc
catgatagtagcaagtggtcttaactgctgagccatcttccagccccaag
attctatagacattctttaacattaggaacaggaaggtctatttacttgc
ccggtgttaaacagctaataaatagcaggattcagagaaaaaaaatgtga
aaagataattagggtgccattaaataggcctgaaaagaagctggtagagt
ttaaatgaagagctggaagatggctgtgaagaggaacttaaatacaaata
aacagtgccatgtaccttttctattgcactggcaggaagaatgtcctctt
aagagaggtaagtgttcatgggctggagagatggctcagcagttaagagc
actgactactcttgcaggggtcttgagttcaattcctagcaaccacatgg
tgactcacaaccatctgtaatgggatctgactgtgacaatgtactcagac
attcaaaataaatcttttttttttttttaaaaaagaaagcggtatacaaa
aagtaacaaaacttggcatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_29633681_29634526
seq2: B6Ng01-213O01.b_338_1177

seq1  TTGAACAGCATAGAAAATATCACATGGAGAAGGAATGGGATACTTTACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAGCATAGAAAATATCACATGGAGAAGGAATGGGATACTTTACAG  50

seq1  ATATCTTTAACGGAGTTTTAAAAGCATTAGGTCACTGATTTCAACTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTAACGGAGTTTTAAAAGCATTAGGTCACTGATTTCAACTGACC  100

seq1  AGATAGCAAATGTCATTGTTTATCAACCAGTAACCATAAATGGTTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCAAATGTCATTGTTTATCAACCAGTAACCATAAATGGTTGCTTT  150

seq1  CAACCTTTATGGTACATTTTAGGAAGTCTTTCAACTTCTGTATCTGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTATGGTACATTTTAGGAAGTCTTTCAACTTCTGTATCTGCTGC  200

seq1  TTTCAGCAAAGATACACCTGCAATATCTAAGTCAAGGGCATGGAACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAAAGATACACCTGCAATATCTAAGTCAAGGGCATGGAACAGTA  250

seq1  CCTGATGTAAGAATGTAGCTATGCAATAGCTTAAGTTATACAAGTTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGTAAGAATGTAGCTATGCAATAGCTTAAGTTATACAAGTTGAAT  300

seq1  ACATAGGCAATCCAAGACAAGTAAGGATGGTTGTTCAGTTGTTCTCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGCAATCCAAGACAAGTAAGGATGGTTGTTCAGTTGTTCTCTTAA  350

seq1  AGGCAGGTAAAATAAACAGACTCTGAGTAAACAGTAGGCTAGCAGTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTAAAATAAACAGACTCTGAGTAAACAGTAGGCTAGCAGTCTTA  400

seq1  ACTCTTAGGTGATGTCAAGATATACTATTAACTTGGGCTGTGAGGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTAGGTGATGTCAAGATATACTATTAACTTGGGCTGTGAGGAGAAA  450

seq1  TTCTAGTCTTTTAGAATGTTAAGAGATATTCTCAGAATATTATATCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCTTTTAGAATGTTAAGAGATATTCTCAGAATATTATATCACCA  500

seq1  GAAGAAAGAACATAGAAAAGGGTAATGTTTAAAAATGACCAAATTTTAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAACATAGAAAAGGGTAATGTTTAAAAATGACCAAATTTTAAT  550

seq1  TTATATACACATGAAATTATCAAAAACAAAAGTGTACTCAGACACAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACACATGAAATTATCAAAAACAAAAGTGTACTCAGACACAGTAA  600

seq1  CATAAAATTGTAATATATGCATTTTGAGAGGTGGAGACATAATAGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTGTAATATATGCATTTTGAGAGGTGGAGACATAATAGCACAG  650

seq1  GTTTTAAACTGTCATGGGTTGCATAGTGAGATCACCTCAACTCAC-TCAC  699
      |||||||||||||||||| |||||||||||||||||||||||||| ||||
seq2  GTTTTAAACTGTCATGGG-TGCATAGTGAGATCACCTCAACTCACTTCAC  699

seq1  TCACTCACTCACTTTCTCTCTC-TCTCTCTCACACACACACACACACACA  748
      |||||||||||||||||||||| |||||||||||||| ||||||||||||
seq2  TCACTCACTCACTTTCTCTCTCTTCTCTCTCACACAC-CACACACACACA  748

seq1  CACACACACACACACACTCAGGGGAGGGGCAAAGCTTTTGAGATACAAAG  798
      ||||||||||||||||||   |||||||   |||||||||  ||||||  
seq2  CACACACACACACACACTTCAGGGAGGG--CAAGCTTTTGGAATACAA--  794

seq1  GTAAAAAAAATTACTTTGAGGGCTGGAGAG-ATGGCTCTGTGGTTAAGA  846
      || ||||||  ||  |||| ||||||| || |||||||||   ||||||
seq2  GTTAAAAAA--TAACTTGA-GGCTGGAAAGAATGGCTCTGGATTTAAGA  840

seq1: chr19_29822182_29823102
seq2: B6Ng01-213O01.g_67_987 (reverse)

seq1  AGATGCCAAGTTCTGCTACTTTCTGTATACCGCTCTCTTTTTTAAAAAAA  50
      |||||||||||| || |||||| ||||||||||| |||||||||||||||
seq2  AGATGCCAAGTTTTGTTACTTTTTGTATACCGCTTTCTTTTTTAAAAAAA  50

seq1  AAAAAAAGATTTATTTTGAATGTCTGAGTACATTGTCACAGTCAGATCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGATTTATTTTGAATGTCTGAGTACATTGTCACAGTCAGATCCC  100

seq1  ATTACAGATGGTTGTGAGTCACCATGTGGTTGCTAGGAATTGAACTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGATGGTTGTGAGTCACCATGTGGTTGCTAGGAATTGAACTCAAG  150

seq1  ACCCCTGCAAGAGTAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCAAGAGTAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGC  200

seq1  CCATGAACACTTACCTCTCTTAAGAGGACATTCTTCCTGCCAGTGCAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAACACTTACCTCTCTTAAGAGGACATTCTTCCTGCCAGTGCAATA  250

seq1  GAAAAGGTACATGGCACTGTTTATTTGTATTTAAGTTCCTCTTCACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTACATGGCACTGTTTATTTGTATTTAAGTTCCTCTTCACAGCC  300

seq1  ATCTTCCAGCTCTTCATTTAAACTCTACCAGCTTCTTTTCAGGCCTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCAGCTCTTCATTTAAACTCTACCAGCTTCTTTTCAGGCCTATTT  350

seq1  AATGGCACCCTAATTATCTTTTCACATTTTTTTTCTCTGAATCCTGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCACCCTAATTATCTTTTCACATTTTTTTTCTCTGAATCCTGCTAT  400

seq1  TTATTAGCTGTTTAACACCGGGCAAGTAAATAGACCTTCCTGTTCCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGCTGTTTAACACCGGGCAAGTAAATAGACCTTCCTGTTCCTAAT  450

seq1  GTTAAAGAATGTCTATAGAATCTTGGGGCTGGAAGATGGCTCAGCAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAATGTCTATAGAATCTTGGGGCTGGAAGATGGCTCAGCAGTTA  500

seq1  AGACCACTTGCTACTATCATGGAGGTGCAGGGTTGAGTTCTCAGCACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACTTGCTACTATCATGGAGGTGCAGGGTTGAGTTCTCAGCACCCA  550

seq1  CATAATAGCTCCCAATCCTCTTCAAGTCCAGTTCCAGTGGATCTAACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGCTCCCAATCCTCTTCAAGTCCAGTTCCAGTGGATCTAACACC  600

seq1  TCTTCTGGCTTCCTCCAGCACAGGTACTCATGTGATGTGTGGTGATAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCTTCCTCCAGCACAGGTACTCATGTGATGTGTGGTGATAAAA  650

seq1  GCAGGCAGAACACTTGCATACATAACATAAAAACAACAGTAGCCATCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGAACACTTGCATACATAACATAAAAACAACAGTAGCCATCTAC  700

seq1  TTTTGGAATGTTTATGAGTAAGTGAAATAATATATAAGGCTAATAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAATGTTTATGAGTAAGTGAAATAATATATAAGGCTAATAGTGTT  750

seq1  ACATGAATATTAATTCTGCTGAGGAAAAAATAGGAGGGACTGAAAAATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATATTAATTCTGCTGAGGAAAAAATAGGAGGGACTGAAAAATGG  800

seq1  CATGGGTTTGAGGATGGAGTAGCTTTATGGTTGAACACATGCCTGGTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTTTGAGGATGGAGTAGCTTTATGGTTGAACACATGCCTGGTATA  850

seq1  TGCATAAAGACCTGGATTTCATTCCCAGCACTGCAAAGTTATAAAAAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAAGACCTGGATTTCATTCCCAGCACTGCAAAGTTATAAAAAATA  900

seq1  AACTGATAAGACAGAGAATTC  921
      |||||||||||||||||||||
seq2  AACTGATAAGACAGAGAATTC  921