BAC Information

Click to search

BAC

Clone NameB6Ng01-214P21
Chromosome19 (Build37)
Map Location 15,093,871 - 15,254,933
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225
Downstream geneEG635497, Pomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214P21.bB6Ng01-214P21.g
ACCGA032091GA032092
length1,1401,114
definitionB6Ng01-214P21.b B6Ng01-214P21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,093,871 - 15,094,987)(15,253,812 - 15,254,933)
sequence
gaattctctcctctaagattccacaaattaaatgcttaaaacccaaacca
ttcaggtaatacatggggcaatgagttctatagttctgaaagaaagtctt
gcaaacgtccaataaatatttgagagtgtccagtacttgtggccgttgca
gaaatacaaattaaacctgctttgacattctatctcacctcaatcataat
ggctttcaaaaaacaaaacaaataaaaaccaatacaaaacaaaatgtagt
aacaaatgctgctgagcattgtgaagaaatgaagaaccatttttactgct
gctctaagtacaaactggagtggccattagggaagtcaatatggtggtac
tccaaaaacctgaaactaggggctgggaatttgactcagttggtagagtc
ctcacctaggattctagagttcagggttcagtccctaaacctacctaaac
caggattgttgcagacagccccatgtctgattctagcatctcagtggtag
aaaaaggaggctcatgagttcaaggtcattctcagtttaaaccaatacct
ggacaacttaggccacataaaaatactcatcaatcaatcaatcaatcaat
cattcaatccctaacaatctaaataaaaaagtgaactacaagtatcatat
aatccagcaatacctttccagggtgtgtttgtgtgtgtctctgtgtgtgt
ctctgtgtgtgtgtctgtgtgtgtgtgtctctctgtgtgtgtactgtgtg
attctgcttttgttacttttctattaatgtaataaaacatcatgaccaag
gcaaattatagaaggaagggtttatttgggggttatgggtccagagggtt
tcatgatgacaaagcagaggcatggtggcaggaacagttgagagctcaca
gaaacagagagagctaactcaggcattacaagtcttttgagaatctcaaa
gtctaccactaccaacatgttttcctcttaacaaagacatcacttactcc
tcttcacaaactaccaactgggaaccaaagttacttcaaatggcccagga
cttatgaagggacatctcattccatacttttattgagttcttattgttct
aagcacttgccatgtgtattttatttaaattatgtcaaga
gaattcatctcctgatatgacaaattgctccaaccccacactgggattcc
ttgcctgccatgatggactgtatattttcaaaccctgagccaagacaaat
ctttcctcccttaattttgctttctgtcagatactttcatcatgttatat
agctagacaggccttagcagacttggtgaccattgaggatggaaccctca
ctcacgtcagctttagactccactttctatttcactgataggagaagcat
cacaaatcttcctccttaagctgtaaaataccacaggaaaagctggaggc
atcagagcttccttgaggcccagtaaagaaaaactgcctttctaggtcaa
aaggatggaatctgagttctatatctggccctagtgaaaatatggtatgc
tggactgccccattaattaggctactgtgtacaattgtctcttctcttac
agattaatcctgctgggcctgtcaatcatctggccaggagaccataactc
aaaacagcagattcctgtaaacacatgctagacaatgaaagaaataatgt
atgagccttaggaaccctctagtcctcccagatatatttacttacagact
ttaattgttaagcctgcccacttttcttaattccaactcaaatatgactt
ttcttttttcctttgtttttaatatctttgtgagtcattgcccaaaaacg
taagcatgccttctctgatattctaggctcttgatgcttttctgaagacc
tcttccctttctgcatctctctgctgacttccacatctaatttataaaag
gcatcatttttctctcttacttgtcatcttcttccttttggcagctgcca
tgatgcacagcttggtgtctctgttgttggtgctgctgtttcaaacacga
atagatgatcatttaactttttatcagaaaatgagaactcacaaatggaa
catagattcctggtaatattcatagcacagacaaaagctctaatgtttgt
gctagtagtgttatcccagaacaagagctgaccttacctcttatattttc
taaatccagtaatctgatggagtctgaaattggccattctatcacatttc
aaggtgatgttgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15093871_15094987
seq2: B6Ng01-214P21.b_52_1191

seq1  GAATTCTCTCCTCTAAGATTCCACAAATTAAATGCTTAAAACCCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTCTAAGATTCCACAAATTAAATGCTTAAAACCCAAACCA  50

seq1  TTCAGGTAATACATGGGGCAATGAGTTCTATAGTTCTGAAAGAAAGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTAATACATGGGGCAATGAGTTCTATAGTTCTGAAAGAAAGTCTT  100

seq1  GCAAACGTCCAATAAATATTTGAGAGTGTCCAGTACTTGTGGCCGTTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACGTCCAATAAATATTTGAGAGTGTCCAGTACTTGTGGCCGTTGCA  150

seq1  GAAATACAAATTAAACCTGCTTTGACATTCTATCTCACCTCAATCATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAAATTAAACCTGCTTTGACATTCTATCTCACCTCAATCATAAT  200

seq1  GGCTTTCAAAAAACAAAACAAATAAAAACCAATACAAAACAAAATGTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAAAAAACAAAACAAATAAAAACCAATACAAAACAAAATGTAGT  250

seq1  AACAAATGCTGCTGAGCATTGTGAAGAAATGAAGAACCATTTTTACTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGCTGCTGAGCATTGTGAAGAAATGAAGAACCATTTTTACTGCT  300

seq1  GCTCTAAGTACAAACTGGAGTGGCCATTAGGGAAGTCAATATGGTGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAAGTACAAACTGGAGTGGCCATTAGGGAAGTCAATATGGTGGTAC  350

seq1  TCCAAAAACCTGAAACTAGGGGCTGGGAATTTGACTCAGTTGGTAGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAACCTGAAACTAGGGGCTGGGAATTTGACTCAGTTGGTAGAGTC  400

seq1  CTCACCTAGGATTCTAGAGTTCAGGGTTCAGTCCCTAAACCTACCTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTAGGATTCTAGAGTTCAGGGTTCAGTCCCTAAACCTACCTAAAC  450

seq1  CAGGATTGTTGCAGACAGCCCCATGTCTGATTCTAGCATCTCAGTGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTGTTGCAGACAGCCCCATGTCTGATTCTAGCATCTCAGTGGTAG  500

seq1  AAAAAGGAGGCTCATGAGTTCAAGGTCATTCTCAGTTTAAACCAATACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGGCTCATGAGTTCAAGGTCATTCTCAGTTTAAACCAATACCT  550

seq1  GGACAACTTAGGCCACATAAAAATACTCATCAATCAATCAATCAATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAACTTAGGCCACATAAAAATACTCATCAATCAATCAATCAATCAAT  600

seq1  CATTCAATCCCTAACAATCTAAATAAAAAAGTGAACTACAAGTATCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATCCCTAACAATCTAAATAAAAAAGTGAACTACAAGTATCATAT  650

seq1  AATCCAGCAATACCTTTCCAGGGTGTGTTTGTGTGTGTCTCTGTGTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAATACCTTTCCAGGGTGTGTTTGTGTGTGTCTCTGTGTGTGT  700

seq1  CTCTGTGTGTGTGTCTGTGTGTGTGTGTCTCTCTGTGTGTGTACTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTGTCTGTGTGTGTGTGTCTCTCTGTGTGTGTACTGTGTG  750

seq1  ATTCTGCTTTTGTTACTTTTCTATTAATGTAATAAAACATCATGACCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCTTTTGTTACTTTTCTATTAATGTAATAAAACATCATGACCAAG  800

seq1  GCAAATTATAGAAGGAAGGGTTTATTTGGGGGTTATGGGTCCAGAGGG-T  849
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCAAATTATAGAAGGAAGGGTTTATTTGGGGGTTATGGGTCCAGAGGGTT  850

seq1  TCATGATGACAAAGCAGAGGCATGGTGGCAGGAACAGTTGAGAGCTCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGACAAAGCAGAGGCATGGTGGCAGGAACAGTTGAGAGCTCACA  900

seq1  GAAAACAGAGAGAGCTAACTCAAGCATTACAAGTCTTTTGAG-ATCTCAA  948
      | |||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  G-AAACAGAGAGAGCTAACTCAGGCATTACAAGTCTTTTGAGAATCTCAA  949

seq1  AGCCTACCACTACCAACATG-TTTCCTC-TAACAAAGACATCACCTACTC  996
      || ||||||||||||||||| ||||||| ||||||||||||||| |||||
seq2  AGTCTACCACTACCAACATGTTTTCCTCTTAACAAAGACATCACTTACTC  999

seq1  CTC-TCAC-AACTACCAACTGGGAACCAA--GTAC-TCAAAT-GCCCAAG  1040
      ||| |||| ||||||||||||||||||||   ||| |||||| ||||| |
seq2  CTCTTCACAAACTACCAACTGGGAACCAAAGTTACTTCAAATGGCCCAGG  1049

seq1  ACTTATGA--GGACATCTCA-TCCAAAC-TTTAATGAGT--CTAT--GTC  1082
      ||||||||  |||||||||| |||| || |||| |||||   |||   ||
seq2  ACTTATGAAGGGACATCTCATTCCATACTTTTATTGAGTTCTTATTGTTC  1099

seq1  T-AGCACCTGCCATG-GTA-TTTATT---AATATGTCAAGA  1117
      | ||||| ||||||| ||| ||||||   | ||||||||||
seq2  TAAGCACTTGCCATGTGTATTTTATTTAAATTATGTCAAGA  1140

seq1: chr19_15253812_15254933
seq2: B6Ng01-214P21.g_62_1175 (reverse)

seq1  AGCAACATCACCTGAAAATGTGATAGAAATGCAAATTTTAGACTCAATCC  50
      |||||||||||||  |||||||||||||  || ||||| |||||| || |
seq2  AGCAACATCACCTTGAAATGTGATAGAATGGCCAATTTCAGACTCCAT-C  49

seq1  AGATTTACTGGATTTAG-AAATAT-AGA-GTAAGGTCCAGCCTCTTGTTC  97
      ||| ||||||||||||| |||||| ||| ||||||| ||| |||||||||
seq2  AGA-TTACTGGATTTAGAAAATATAAGAGGTAAGGT-CAG-CTCTTGTTC  96

seq1  TTGGATTAACACTACTAAGCACAAACATTAGAGCTTTTGTCTGTGCTATG  147
      | ||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGGA-TAACACTACT-AGCACAAACATTAGAGCTTTTGTCTGTGCTATG  144

seq1  AATATTACCAGGGAATCTATGTTCCATTTTGTGAGTTCTCATTTTTCTTG  197
      |||||||||| ||||||||||||||| ||||||||||||||||||   ||
seq2  AATATTACCA-GGAATCTATGTTCCA-TTTGTGAGTTCTCATTTT--CTG  190

seq1  ATAAAAAGTTAAATGATCATCTTATTCGTGTTTGAAACAGCAGCACCAAC  247
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAAAAAGTTAAATGATCATC-TATTCGTGTTTGAAACAGCAGCACCAAC  239

seq1  AACAGAGACACCAAGCTGTGCATCATGGCAGCTGCCAAAAGGAAGAAGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGACACCAAGCTGTGCATCATGGCAGCTGCCAAAAGGAAGAAGAT  289

seq1  GACAAGTAAGAGAGAAAAATGATGCCTTTTATAAATTAGATGTGGAAGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTAAGAGAGAAAAATGATGCCTTTTATAAATTAGATGTGGAAGTC  339

seq1  AGCAGAGAGATGCAGAAAGGGAAGAGGTCTTCAGAAAAGCATCAAGAGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAGATGCAGAAAGGGAAGAGGTCTTCAGAAAAGCATCAAGAGCC  389

seq1  TAGAATATCAGAGAAGGCATGCTTACGTTTTTGGGCAATGACTCACAAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATCAGAGAAGGCATGCTTACGTTTTTGGGCAATGACTCACAAAG  439

seq1  ATATTAAAAACAAAGGAAAAAAGAAAAGTCATATTTGAGTTGGAATTAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAAAACAAAGGAAAAAAGAAAAGTCATATTTGAGTTGGAATTAAG  489

seq1  AAAAGTGGGCAGGCTTAACAATTAAAGTCTGTAAGTAAATATATCTGGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGGGCAGGCTTAACAATTAAAGTCTGTAAGTAAATATATCTGGGA  539

seq1  GGACTAGAGGGTTCCTAAGGCTCATACATTATTTCTTTCATTGTCTAGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAGGGTTCCTAAGGCTCATACATTATTTCTTTCATTGTCTAGCA  589

seq1  TGTGTTTACAGGAATCTGCTGTTTTGAGTTATGGTCTCCTGGCCAGATGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTACAGGAATCTGCTGTTTTGAGTTATGGTCTCCTGGCCAGATGA  639

seq1  TTGACAGGCCCAGCAGGATTAATCTGTAAGAGAAGAGACAATTGTACACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGGCCCAGCAGGATTAATCTGTAAGAGAAGAGACAATTGTACACA  689

seq1  GTAGCCTAATTAATGGGGCAGTCCAGCATACCATATTTTCACTAGGGCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCTAATTAATGGGGCAGTCCAGCATACCATATTTTCACTAGGGCCA  739

seq1  GATATAGAACTCAGATTCCATCCTTTTGACCTAGAAAGGCAGTTTTTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAGAACTCAGATTCCATCCTTTTGACCTAGAAAGGCAGTTTTTCTT  789

seq1  TACTGGGCCTCAAGGAAGCTCTGATGCCTCCAGCTTTTCCTGTGGTATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGCCTCAAGGAAGCTCTGATGCCTCCAGCTTTTCCTGTGGTATTT  839

seq1  TACAGCTTAAGGAGGAAGATTTGTGATGCTTCTCCTATCAGTGAAATAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTTAAGGAGGAAGATTTGTGATGCTTCTCCTATCAGTGAAATAGA  889

seq1  AAGTGGAGTCTAAAGCTGACGTGAGTGAGGGTTCCATCCTCAATGGTCAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAGTCTAAAGCTGACGTGAGTGAGGGTTCCATCCTCAATGGTCAC  939

seq1  CAAGTCTGCTAAGGCCTGTCTAGCTATATAACATGATGAAAGTATCTGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTGCTAAGGCCTGTCTAGCTATATAACATGATGAAAGTATCTGAC  989

seq1  AGAAAGCAAAATTAAGGGAGGAAAGATTTGTCTTGGCTCAGGGTTTGAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAAATTAAGGGAGGAAAGATTTGTCTTGGCTCAGGGTTTGAAA  1039

seq1  ATATACAGTCCATCATGGCAGGCAAGGAATCCCAGTGTGGGGTTGGAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGTCCATCATGGCAGGCAAGGAATCCCAGTGTGGGGTTGGAGCA  1089

seq1  ATTTGTCATATCAGGAGATGAATTC  1122
      |||||||||||||||||||||||||
seq2  ATTTGTCATATCAGGAGATGAATTC  1114