BAC Information

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BAC

Clone NameB6Ng01-215A21
Chromosome19 (Build37)
Map Location 29,911,256 - 30,060,666
singlet/doubletdoublet
Overlap geneIl33
Upstream geneSlc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238, Jak2, Insl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6
Downstream geneTrpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, Prkg1, LOC625995
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215A21.bB6Ng01-215A21.g
ACCGA032134GA032135
length389910
definitionB6Ng01-215A21.b B6Ng01-215A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,060,272 - 30,060,666)(29,911,256 - 29,912,158)
sequence
aatgggttgagcctcagagtgggaagaccaccgcgatgatcacagtaccc
ccctcccccaccaggtaaggacagcacttcagtgtcttgaaagaaaaaca
ctggctaatagactttcaaactttgagaaccatcttcaaaatatttcaca
tggcctgaaagttacaaatagaacgtcatcaaagaaggaatgtttctggc
ttctatgaagaccattggaaacaaacatcacttaaaaaaatcaaggaggg
tggcaagctgtcctctgacccacacatgcatgttgtggcacgtgccaccc
ttccctctcccatgtaaacagaataaaatctgatgatgacgacggcagtg
acggtgatggtgatgatgatggtgatggtgatggtgatg
gaattcaagtttgactgataacttgattagaagtcactggtggcctgccc
tctgagtttatagggaaagccagacactggacttctgggaactggcttcc
tccacaaagtccttctctagaattgtttagaaccacagttgtttctaaac
tctggctttttttttttcaagtgaaaatttgtatgactgcttttgcttca
gtaaaaaacttaaaaaatagttcagcttaaaaaacaaaacaaaataaagc
ctgaaagggacttgtttctatgcgatgactcatgtctttcctgaggccta
atcttgggacatggtgtcagtcatttcctctgttcctacctgacagagtt
cagaccattcctaaaagaaagttcaggatgaagctaaaagcaggagatcc
attctttccggttatttagttgtacccctcggttgctttcatcctttggg
cacaagctccttagagacacttccagatctccatcctttcacttctgttc
ctttgatggacagaacaactccatcaaacttacctcaagcctcaggaact
gtgctgagcacagaggtaactcagggacccagcttaacacagctttctga
gattcggtcctaaagcaccctgctgtctgtttccccgtgtatagcatcca
ctgcttctcatttcctgaatatttctggctgtttcctctgcagctccact
gacccactcttggaactggtgctgggcatcactctttaagattttgtttt
tcctcgagatttgactctttggtgtgtgcacatactgctttcaaactgtc
ttgagtattctcccaagctattgaatttagttaacaggcctataatcccg
ttttctctagtcctccacccaatgtttaaggctgccatccagttcacttc
atgggcttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_30060272_30060666
seq2: B6Ng01-215A21.b_47_441 (reverse)

seq1  CATCACCATCACCATCACCATCATCATCACCATCACCGTCACTGCCGTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCATCACCATCACCATCATCATCACCATCACCGTCACTGCCGTCG  50

seq1  TCATCATCAGATTTTATTCTGTTTACATGGGAGAGGGAAGGGTGGCACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCAGATTTTATTCTGTTTACATGGGAGAGGGAAGGGTGGCACGT  100

seq1  GCCACAACATGCATGTGTGGGTCAGAGGACAGCTTGCCACCCTCCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAACATGCATGTGTGGGTCAGAGGACAGCTTGCCACCCTCCTTGAT  150

seq1  TTTTTTAAGTGATGTTTGTTTCCAATGGTCTTCATAGAAGCCAGAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTGATGTTTGTTTCCAATGGTCTTCATAGAAGCCAGAAACAT  200

seq1  TCCTTCTTTGATGACGTTCTATTTGTAACTTTCAGGCCATGTGAAATATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTGATGACGTTCTATTTGTAACTTTCAGGCCATGTGAAATATT  250

seq1  TTGAAGATGGTTCTCAAAGTTTGAAAGTCTATTAGCCAGTGTTTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATGGTTCTCAAAGTTTGAAAGTCTATTAGCCAGTGTTTTTCTTT  300

seq1  CAAGACACTGAAGTGCTGTCCTTACCTGGTGGGGGAGGGGGGTACTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACACTGAAGTGCTGTCCTTACCTGGTGGGGGAGGGGGGTACTGTGA  350

seq1  TCATCGCGGTGGTCTTCCCACTCTGAGGCTCAACCCATTGAATTC  395
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGCGGTGGTCTTCCCACTCTGAGGCTCAACCCATTGAATTC  395

seq1: chr19_29911256_29912158
seq2: B6Ng01-215A21.g_71_980

seq1  GAATTCAAGTTTGACTGATAACTTGATTAGAAGTCACTGGTGGCCTGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTTGACTGATAACTTGATTAGAAGTCACTGGTGGCCTGCCC  50

seq1  TCTGAGTTTATAGGGAAAGCCAGACACTGGACTTCTGGGAACTGGCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTATAGGGAAAGCCAGACACTGGACTTCTGGGAACTGGCTTCC  100

seq1  TCCACAAAGTCCTTCTCTAGAATTGTTTAGAACCACAGTTGTTTCTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGTCCTTCTCTAGAATTGTTTAGAACCACAGTTGTTTCTAAAC  150

seq1  TCTGGCTTTTTTTTTTTCAAGTGAAAATTTGTATGACTGCTTTTGCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTTTTTTTTTCAAGTGAAAATTTGTATGACTGCTTTTGCTTCA  200

seq1  GTAAAAAACTTAAAAAATAGTTCAGCTTAAAAAACAAAACAAAATAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAACTTAAAAAATAGTTCAGCTTAAAAAACAAAACAAAATAAAGC  250

seq1  CTGAAAGGGACTTGTTTCTATGCGATGACTCATGTCTTTCCTGAGGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGGACTTGTTTCTATGCGATGACTCATGTCTTTCCTGAGGCCTA  300

seq1  ATCTTGGGACATGGTGTCAGTCATTTCCTCTGTTCCTACCTGACAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGACATGGTGTCAGTCATTTCCTCTGTTCCTACCTGACAGAGTT  350

seq1  CAGACCATTCCTAAAAGAAAGTTCAGGATGAAGCTAAAAGCAGGAGATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATTCCTAAAAGAAAGTTCAGGATGAAGCTAAAAGCAGGAGATCC  400

seq1  ATTCTTTCCGGTTATTTAGTTGTACCCCTCGGTTGCTTTCATCCTTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCGGTTATTTAGTTGTACCCCTCGGTTGCTTTCATCCTTTGGG  450

seq1  CACAAGCTCCTTAGAGACACTTCCAGATCTCCATCCTTTCACTTCTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTCCTTAGAGACACTTCCAGATCTCCATCCTTTCACTTCTGTTC  500

seq1  CTTTGATGGACAGAACAACTCCATCAAACTTACCTCAAGCCTCAGGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATGGACAGAACAACTCCATCAAACTTACCTCAAGCCTCAGGAACT  550

seq1  GTGCTGAGCACAGAGGTAACTCAGGGACCCAGCTTAACACAGCTTTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGCACAGAGGTAACTCAGGGACCCAGCTTAACACAGCTTTCTGA  600

seq1  GATTCGGTCCTAAAGCACCCTGCTGTCTG-TTCCCCGTGTATAGCATCCA  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATTCGGTCCTAAAGCACCCTGCTGTCTGTTTCCCCGTGTATAGCATCCA  650

seq1  CTGCTTCTCATTTCCTGAATA-TTCTGGCTGTTTCCTCTGCAGCTCCACT  698
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTGCTTCTCATTTCCTGAATATTTCTGGCTGTTTCCTCTGCAGCTCCACT  700

seq1  GACCCACTCTTGGAACTGGTGCTGGGCATCACTCTTTAAGATTTTGTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACTCTTGGAACTGGTGCTGGGCATCACTCTTTAAGATTTTGTTTT  750

seq1  TCCTCGAGATTTGACTCTTTGGTGTGTGCACATACTGCTTTCAAACTGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCGAGATTTGACTCTTTGGTGTGTGCACATACTGCTTTCAAACTGTC  800

seq1  TTGAGTATTCTCCCAAGCTATTGAA-TTAGTTAACAGGCCTATAAT-CCG  846
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  TTGAGTATTCTCCCAAGCTATTGAATTTAGTTAACAGGCCTATAATCCCG  850

seq1  TTTTCTCTAGTCCTCCACCCAATG-TTAAAGCTGCCATCCAGTTCAC-TC  894
      |||||||||||||||||||||||| |||| ||||||||||||||||| ||
seq2  TTTTCTCTAGTCCTCCACCCAATGTTTAAGGCTGCCATCCAGTTCACTTC  900

seq1  A-GGGCTTCT  903
      | ||||||||
seq2  ATGGGCTTCT  910