BAC Information

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BAC

Clone NameB6Ng01-215G12
Chromosome19 (Build37)
Map Location 43,510,583 - 43,707,584
singlet/doubletdoublet
Overlap geneCnnm1, Got1, Nkx2-3, LOC100042700
Upstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneLOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215G12.bB6Ng01-215G12.g
ACCGA032384GA032385
length804790
definitionB6Ng01-215G12.b B6Ng01-215G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,510,583 - 43,511,376)(43,706,795 - 43,707,584)
sequence
gaattctttttgtttacagtgctccattcttcatggtgaaaggaacataa
gcatagagttctaaaaatgtctttctaaccatttagcctaccctgttagg
tagatgtaattatttctacttcacagggcaatcatgtgcacctacagctt
gataaaagtgttaggtgatacttttatgatggtcaaatatttggcttaat
aaaggtgcaagagcccttatgataaaccagtgtctttgtgttagaaggtt
cgggggtggggggagagattgccaggtgagacatgagagattttagtgag
gatgtagctttggatccatgtagagagaaaagcttttgaacttacacaca
cacacacacacacacacacacacacacacacgcaggcacgtgtgggcaca
cacacacaatgtaaacagaagagtttatacatttgaagaattgggaaagt
attttgtgtcttctgtttctttttaatttatttttttcttgcttttaact
tttttaaacctaatttttaaacttcaactatgtggactacacatatactc
ctccttctcacaccaaccccctccatgaagatccctgcccccagcctgct
ccgcctcaaattatagcctctttttctttagtttattattgctaataact
atattgttattgtatggttaatataataagttatattgttcttaactgat
aaatatataagtacacccttgctgagctttatattaatattgcttcatac
gtatgtatgggtaaagatcgttatatcctattcaggacgcttatttctcc
tctt
gaattcctgtgctttctcctgaacccgtggagccagtgttgtaggaccca
ggagtactctgtttctcatttttgcaaaacatacgtaatataaagtgtta
ccacgtaaattatttccgagtgcacaattcagtggttttaggcacattga
tgttgtgtcaccagccatcactgtcacgttactgagactgtggctttgca
acagtgctttcccagggtcctctgtctgcagccgttggcaatgacgatgt
ccattccaggtatctcaggaaagtggaactgatttgccactcccagcctg
ctttatatcacttagcaaagtgttctcggtgctcctgtacattgtagtat
gtgttttgggtttctactccttagggctgggtaatttgccaccgtgggca
cataactgccctttgcttggcttgttaatgctttgatgggcatcggcctg
ctcctgcttgttttgaatgatgttgtaatgacgttatatgtgtacacatt
tgcttgagtctccgctttcgactcttttggcaatatggcacacctacatt
ttcagggccacgtggtatttctaagttcagctttttaaggatccgtcata
ctggttaacttagtagctgtatctttttacagtcccaccaacaatgtatt
aagcgtgagcaccccagtctctgcataccttccttttgagacaggacctc
attatttgtttgtttaacttactaaagaggtacgtttgtttttaaccaat
taattaattagtatgtgtgtgtgtgtgtgtgtgtatgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43510583_43511376
seq2: B6Ng01-215G12.b_42_844

seq1  GAATTCTTTTTGTTTACAGTGCTCCATTCTTCATGGTGAAAGGAACATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTTTACAGTGCTCCATTCTTCATGGTGAAAGGAACATAA  50

seq1  GCATAGAGTTCTAAAAATGTCTTTCTAACCATTTAGCCTACCCTGTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGTTCTAAAAATGTCTTTCTAACCATTTAGCCTACCCTGTTAGG  100

seq1  TAGATGTAATTATTTCTACTTCACAGGGCAATCATGTGCACCTACAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGTAATTATTTCTACTTCACAGGGCAATCATGTGCACCTACAGCTT  150

seq1  GATAAAAGTGTTAGGTGATACTTTTATGATGGTCAAATATTTGGCTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAAGTGTTAGGTGATACTTTTATGATGGTCAAATATTTGGCTTAAT  200

seq1  AAAGGTGCAAGAGCCCTTATGATAAACCAGTGTCTTTGTGTTAGAAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGCAAGAGCCCTTATGATAAACCAGTGTCTTTGTGTTAGAAGGTT  250

seq1  CGGGGGTGGGGGGAGAGATTGCCAGGTGAGACATGAGAGATTTTAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGGTGGGGGGAGAGATTGCCAGGTGAGACATGAGAGATTTTAGTGAG  300

seq1  GATGTAGCTTTGGATCCATGTAGAGAGAAAAGCTTTTGAACTTACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGCTTTGGATCCATGTAGAGAGAAAAGCTTTTGAACTTACACACA  350

seq1  CACACACACACACACACACACACACACACACGCAGGCACGTGTGGGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACGCAGGCACGTGTGGGCACA  400

seq1  CACACACAATGTAAACAGAAGAGTTTATACATTTGAAGAATTGGGAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATGTAAACAGAAGAGTTTATACATTTGAAGAATTGGGAAAGT  450

seq1  ATTTTGTGTCTTCTGTTTCTTTTTAATTTATTTTTTTCTTGCTTTTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTGTCTTCTGTTTCTTTTTAATTTATTTTTTTCTTGCTTTTAACT  500

seq1  TTTTTAAACCTAATTTTTAAACTTCAACTATGTGGACTACACATATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAACCTAATTTTTAAACTTCAACTATGTGGACTACACATATACTC  550

seq1  CTCCTTCTCACACCAACCCCCTCCATGAAGATCCCTGCCCCCAGCCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTCACACCAACCCCCTCCATGAAGATCCCTGCCCCCAGCCTGCT  600

seq1  CCGCCTCAAATTATAGCCTCTTTTTCTTTAG-TTATTATTGCTAATAACT  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCGCCTCAAATTATAGCCTCTTTTTCTTTAGTTTATTATTGCTAATAACT  650

seq1  ATATTGTTATTGTATGGTTAATATAAT-AGTTATATTGTTCTTAACTGAT  698
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATTGTTATTGTATGGTTAATATAATAAGTTATATTGTTCTTAACTGAT  700

seq1  AAATATATAAGTACA-CCTTGCTGAG-TTTAT-TTAATATTGC-TCATAC  744
      ||||||||||||||| |||||||||| ||||| |||||||||| ||||||
seq2  AAATATATAAGTACACCCTTGCTGAGCTTTATATTAATATTGCTTCATAC  750

seq1  GTATGTATGGGTAAAGATCG-GATAGCCTA-TCAGGACGCTCA-TTCTCC  791
      ||||||||||||||||||||  ||| |||| |||||||||| | ||||||
seq2  GTATGTATGGGTAAAGATCGTTATATCCTATTCAGGACGCTTATTTCTCC  800

seq1  TCT  794
      |||
seq2  TCT  803

seq1: chr19_43706795_43707584
seq2: B6Ng01-215G12.g_67_856 (reverse)

seq1  CCACATACACACACACACACACACACATACTAATTAATTAATTGGTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACACACACACACACACACACATACTAATTAATTAATTGGTTAAA  50

seq1  AACAAACGTACCTCTTTAGTAAGTTAAACAAACAAATAATGAGGTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACGTACCTCTTTAGTAAGTTAAACAAACAAATAATGAGGTCCTGT  100

seq1  CTCAAAAGGAAGGTATGCAGAGACTGGGGTGCTCACGCTTAATACATTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAGGAAGGTATGCAGAGACTGGGGTGCTCACGCTTAATACATTGT  150

seq1  TGGTGGGACTGTAAAAAGATACAGCTACTAAGTTAACCAGTATGACGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGACTGTAAAAAGATACAGCTACTAAGTTAACCAGTATGACGGAT  200

seq1  CCTTAAAAAGCTGAACTTAGAAATACCACGTGGCCCTGAAAATGTAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAAAGCTGAACTTAGAAATACCACGTGGCCCTGAAAATGTAGGTG  250

seq1  TGCCATATTGCCAAAAGAGTCGAAAGCGGAGACTCAAGCAAATGTGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATTGCCAAAAGAGTCGAAAGCGGAGACTCAAGCAAATGTGTACA  300

seq1  CATATAACGTCATTACAACATCATTCAAAACAAGCAGGAGCAGGCCGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAACGTCATTACAACATCATTCAAAACAAGCAGGAGCAGGCCGATG  350

seq1  CCCATCAAAGCATTAACAAGCCAAGCAAAGGGCAGTTATGTGCCCACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAAAGCATTAACAAGCCAAGCAAAGGGCAGTTATGTGCCCACGGT  400

seq1  GGCAAATTACCCAGCCCTAAGGAGTAGAAACCCAAAACACATACTACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATTACCCAGCCCTAAGGAGTAGAAACCCAAAACACATACTACAAT  450

seq1  GTACAGGAGCACCGAGAACACTTTGCTAAGTGATATAAAGCAGGCTGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGAGCACCGAGAACACTTTGCTAAGTGATATAAAGCAGGCTGGGA  500

seq1  GTGGCAAATCAGTTCCACTTTCCTGAGATACCTGGAATGGACATCGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAATCAGTTCCACTTTCCTGAGATACCTGGAATGGACATCGTCAT  550

seq1  TGCCAACGGCTGCAGACAGAGGACCCTGGGAAAGCACTGTTGCAAAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACGGCTGCAGACAGAGGACCCTGGGAAAGCACTGTTGCAAAGCCA  600

seq1  CAGTCTCAGTAACGTGACAGTGATGGCTGGTGACACAACATCAATGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAGTAACGTGACAGTGATGGCTGGTGACACAACATCAATGTGCC  650

seq1  TAAAACCACTGAATTGTGCACTCGGAAATAATTTACGTGGTAACACTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCACTGAATTGTGCACTCGGAAATAATTTACGTGGTAACACTTTA  700

seq1  TATTACGTATGTTTTGCAAAAATGAGAAACAGAGTACTCCTGGGTCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACGTATGTTTTGCAAAAATGAGAAACAGAGTACTCCTGGGTCCTAC  750

seq1  AACACTGGCTCCACGGGTTCAGGAGAAAGCACAGGAATTC  790
      ||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGCTCCACGGGTTCAGGAGAAAGCACAGGAATTC  790