BAC Information

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BAC

Clone NameB6Ng01-215P21
Chromosome19 (Build37)1 (Build37)
Map Location 38,936,842 - 38,937,79471,126,161 - 71,126,681
singlet/doubletsingletsinglet
Overlap geneTbc1d12
Upstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
Downstream geneHells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215P21.bB6Ng01-215P21.g
ACCGA032801GA032802
length956736
definitionB6Ng01-215P21.b B6Ng01-215P21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,936,842 - 38,937,794)(71,126,161 - 71,126,681)
sequence
gaattccaggagaggcagagagaacctgtctcaaataaataagtaaataa
ataaataaataaataaaaataaagtaaatctcacaaactaaaaaaccatt
ttgtgcacatgagtacggtgttagaggacaccaaaggagggtgttggatt
ccctggagctggagttgcaggcagttgttaactggcctctataggtgccg
ggaattgaactcaggtcctctggaagaccggtatgcgcttcttcaactac
taaaccatctctccagctcttctttctaaactcttgaaagtgtccttgat
gcaggcaggaaacagtctgtccatccatgtgttactattttcatttagct
cctgcatttccctgataacctgtagctctcagtggcttcctgtattttct
agagtggttagagtgatataacatcatgcattaataatcttattgtttag
gctttttcataggtggtctctggaatgtttctctagatgttttcataatt
tgttgttgtcgagaattataggcattctagagactatgttacgcttgcct
ttccacttcgaagcacttgctgggttttgtttgatgaaagctagcattta
tttttacaagctattttttgcaaagtgtatttttttaatatggctacatg
tttctattctgtggtctgctagcaacacaatgttttttcttacacttctg
gcttcaaaagtgggattgcaaagattccttcctcatttagtgatttgata
gccacacaaactgctgctggggcaaaagtgaaacagatgctcatgtctgt
gccagggcccaggttgctcccagcccaacactgtgcacagtgccatgatt
tgaaaggctgtcatccactcttttcctagtactggtcaaccactccactg
tcacaggagtagaaaggggctgctctagtggatggggtggtggtaaatgg
gtttgt
gaattctgtcatcagggaccgagaacagggtagcatttgggatgttaatt
aattaattaattttaaaatattgtcatattactaaaatcagagaaatctc
tctctagttgagtgtgatgccaggctgtctgcaatcctgatataagtgac
taaagaacaggcagcaggcagaacagcacatgcagcatcccacaggacaa
tctctctctttttttttttttttttttgaattttcagtgttctatttatt
tatttatttattttttccattttttattaggtatttaactcatttacatt
tccaatgctataccaaaagtcccccatacccacccacccccactccccta
cccacccactccccctttttggccctggcgctcccctgtactggggcata
taaaatttgcgtgtccaatgggcctctctttccagtcatggccgactagg
ccatcttttgatacatatgcagctagagtcaagagctccggggcactggt
tagttcataatgttgttccacctatagggttgcagatccctttaactcct
tgggttctttctctagctcctccattgggagccctgtgatccatccatta
gctgactgtgagcatccactttctgtgtttgctaggccccggcatagtct
cacaagagacagctacatctgggtccctttcgataaaatctttgctagtg
tatgcaatggtgtcagcgtttggatgctgattatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38936842_38937794
seq2: B6Ng01-215P21.b_33_988

seq1  GAATTCCAGGAGAGGCAGAGAGAACCTGTCTCAAATAAATAAGTAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGAGGCAGAGAGAACCTGTCTCAAATAAATAAGTAAATAA  50

seq1  ATAAATAAATAAATAAAAATAAAGTAAATCTCACAAACTAAAAAACCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATAAATAAAAATAAAGTAAATCTCACAAACTAAAAAACCATT  100

seq1  TTGTGCACATGAGTACGGTGTTAGAGGACACCAAAGGAGGGTGTTGGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACATGAGTACGGTGTTAGAGGACACCAAAGGAGGGTGTTGGATT  150

seq1  CCCTGGAGCTGGAGTTGCAGGCAGTTGTTAACTGGCCTCTATAGGTGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCTGGAGTTGCAGGCAGTTGTTAACTGGCCTCTATAGGTGCCG  200

seq1  GGAATTGAACTCAGGTCCTCTGGAAGACCGGTATGCGCTTCTTCAACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAACTCAGGTCCTCTGGAAGACCGGTATGCGCTTCTTCAACTAC  250

seq1  TAAACCATCTCTCCAGCTCTTCTTTCTAAACTCTTGAAAGTGTCCTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCTCTCCAGCTCTTCTTTCTAAACTCTTGAAAGTGTCCTTGAT  300

seq1  GCAGGCAGGAAACAGTCTGTCCATCCATGTGTTACTATTTTCATTTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGGAAACAGTCTGTCCATCCATGTGTTACTATTTTCATTTAGCT  350

seq1  CCTGCATTTCCCTGATAACCTGTAGCTCTCAGTGGCTTCCTGTATTTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATTTCCCTGATAACCTGTAGCTCTCAGTGGCTTCCTGTATTTTCT  400

seq1  AGAGTGGTTAGAGTGATATAACATCATGCATTAATAATCTTATTGTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTTAGAGTGATATAACATCATGCATTAATAATCTTATTGTTTAG  450

seq1  GCTTTTTCATAGGTGGTCTCTGGAATGTTTCTCTAGATGTTTTCATAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCATAGGTGGTCTCTGGAATGTTTCTCTAGATGTTTTCATAATT  500

seq1  TGTTGTTGTCGAGAATTATAGGCATTCTAGAGACTATGTTACGCTTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTCGAGAATTATAGGCATTCTAGAGACTATGTTACGCTTGCCT  550

seq1  TTCCACTTCGAAGCACTTGCTGGGTTTTGTTTGATGAAAGCTAGCATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCGAAGCACTTGCTGGGTTTTGTTTGATGAAAGCTAGCATTTA  600

seq1  TTTTTACAAGCTATTTTTTGCAAAGTGTATTTTTTTAATATGGCTACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACAAGCTATTTTTTGCAAAGTGTATTTTTTTAATATGGCTACATG  650

seq1  TTTCTATTCTGTGGTCTGCTAGCAACACAATGTTTTTTCTTACACTTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTCTGTGGTCTGCTAGCAACACAATGTTTTTTCTTACACTTCTG  700

seq1  GCTTCAAAAGTGGGATTGCAAAGATTCCTTCCTCATTTAGTGATTTGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAAAGTGGGATTGCAAAGATTCCTTCCTCATTTAGTGATTTGATA  750

seq1  GCCACACAAACTGCTGCTGGGGCAAAAGTGAAACAGATGCTCATGTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAAACTGCTGCTGGGGCAAAAGTGAAACAGATGCTCATGTCTGT  800

seq1  GCCAGGGCCCAGGTTGCTCCCAGCCCAACACTGTGCACAGTGCCATGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCCCAGGTTGCTCCCAGCCCAACACTGTGCACAGTGCCATGATT  850

seq1  TG-AAGGCTGTCATCCACTCTTTTCCTAGTACTGGTCAACCACTCCACTG  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCTGTCATCCACTCTTTTCCTAGTACTGGTCAACCACTCCACTG  900

seq1  TCACAAGGAGTAG-AAGGGGCTGCTCTAGTGGATGGGGT-GTGGTAAAT-  946
      |||| |||||||| ||||||||||||||||||||||||| ||||||||| 
seq2  TCAC-AGGAGTAGAAAGGGGCTGCTCTAGTGGATGGGGTGGTGGTAAATG  949

seq1  GGTTTGT  953
      |||||||
seq2  GGTTTGT  956

seq1: chr1_71126161_71126681
seq2: B6Ng01-215P21.g_273_795

seq1  --TCTTTTTTTTTTTTTTTTTGAAGTTTGCATGGTTTTATTTTATTTATT  48
        | |||||||||||||||||||| ||| ||  ||| || ||||||||||
seq2  TCTTTTTTTTTTTTTTTTTTTGAA-TTTTCAGTGTTCTA-TTTATTTATT  48

seq1  TTTATTTTTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCC  98
      | | || |||||||||||||||||||||||||||||||||||||||||||
seq2  TAT-TTATTTTTTCCATTTTTTATTAGGTATTTAACTCATTTACATTTCC  97

seq1  AATGCTATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCC  148
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  AATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCC  147

seq1  ACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTACTGGGGCATATAA  198
      |||||||||||||||||||||||||   ||||||||||||||||||||||
seq2  ACCCACTCCCCCTTTTTGGCCCTGGCGCTCCCCTGTACTGGGGCATATAA  197

seq1  AGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCA  248
      | |||||  |||||||||||||||||||||||| ||||||||||||||||
seq2  AATTTGCGTGTCCAATGGGCCTCTCTTTCCAGTCATGGCCGACTAGGCCA  247

seq1  TCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAG  298
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGCACTGGTTAG  297

seq1  CTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGG  348
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAACTCCTTGG  347

seq1  CTACTTTCTCTAGCTCCTCCATTGGGAGCCCTATGATCCATCCATTAGCT  398
       | ||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTCTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAGCT  397

seq1  GACTGTGAGCATCCAC-TTCTGTGTTTGCTGGGCCCCGGCATAGTCTCAC  447
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GACTGTGAGCATCCACTTTCTGTGTTTGCTAGGCCCCGGCATAGTCTCAC  447

seq1  AAGAGACAGCTACATCTGCGT-CCTTTCAATAAAATC-TTGCTAGTGTAT  495
      |||||||||||||||||| || |||||| |||||||| ||||||||||||
seq2  AAGAGACAGCTACATCTGGGTCCCTTTCGATAAAATCTTTGCTAGTGTAT  497

seq1  GCAATGGTGTCAGCGTTTGGATGCTG  521
      ||||||||||||||||||||||||||
seq2  GCAATGGTGTCAGCGTTTGGATGCTG  523