BAC Information

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BAC

Clone NameB6Ng01-217G18
Chromosome19 (Build37)
Map Location 44,357,188 - 44,504,819
singlet/doubletdoublet
Overlap geneScd2, Scd4, Scd1
Upstream geneLOC545291, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152
Downstream geneWnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217G18.bB6Ng01-217G18.g
ACCGA033838GA033839
length1,040369
definitionB6Ng01-217G18.b B6Ng01-217G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,503,837 - 44,504,819)(44,357,188 - 44,357,562)
sequence
gaattcataatctagttgaagggacagggctcagggacaccaacagagag
tcagtgaccaggaaggtgagggctggggtgttagagagccccaacatagc
tgagactctgaatgcacaaaatgcattgaaggctctgagttccctgaaga
tttgcttgagagaagacaaaggcagagagaaagaaaagggagggcaccag
ggaactcacagagtattgttttagtaattgtaggaaccttcagaacacag
tcttctcaggccaaggagatggcagatagagagagctttgccacaacagc
acaaacgacagagttcagatccccacaactcatataaagtcagatgtgac
agcacacgtatgtaatcccagcgcatctgtcatgaggggaggctgacagg
agaatcctggaaagctcaggggccaggtagcctggtggtcacagggatgc
acagcgagagatacggccttaaaagcacgttgggaagcaaggagcaacac
ccaaggctgtcctctgactcccacatgtgagcccacgctaactgaacaca
cacacatctggacatgtatgtacatgtataaaaagggaaaactgatagat
attgtctcagaagtagtttttgttgatttttaaatttgtgggcacgtgct
ttaattctcaaggtagagttaagtaataataatgattttgagattttata
aagagcccagttcagaggagatagcatctttgcatggttacaagtttcag
atcaatccttgccctgccctgtggctgcctgcagtgtggttgcggtgtca
gttgtgaggggaagagagcatgctcatttcgccattgccatcagacgttg
cgctaaatgtatagcacaatccttgacggggctgtttcgcctttcacaat
aggtcttatcggggtatgaaaggcctaagagatgctcgaactcccttcac
atcacacagcggacaactgggaagtgccaggtctttgaaggcctggccct
ggaagcccagggcaaggcctgaaattcatttcaggaggcc
acacaatcattcggcacaagctccctttgttcttcaaggacccaactcag
tctgaccacgtgaccatcttaatatccaaccacacctaaggcttaggtcg
tacactgacgtcagcaaaagcaggtcttccatctctgctcttccagcagc
agcacactgtcctgtaaaaagcttcctcctcaaggccagctttctcctct
cggggagcaggggagagaatggagactgaacctagaacctttcacatgct
aggcaagggctccacccctgagcctcattacccaggtccagatttctctt
acaaggacctgccagtaaccaagtaccaggctataagacctgtgaaaaag
gagagggggggaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_44503837_44504819
seq2: B6Ng01-217G18.b_49_1043 (reverse)

seq1  CAGG-CTTC-AAGGCCTGGCACT--CCAGTTGTCCGCTGTGTGATGTG-A  45
      |||| |||| ||| |||||||||  ||||||||||||||||||||||| |
seq2  CAGGCCTTCAAAGACCTGGCACTTCCCAGTTGTCCGCTGTGTGATGTGAA  50

seq1  GGGAGTTCGAGCATCTCTTA-GCCCTTCATA-CCCGATAAGA-CTATTGT  92
      |||||||||||||||||||| ||| |||||| |||||||||| |||||||
seq2  GGGAGTTCGAGCATCTCTTAGGCCTTTCATACCCCGATAAGACCTATTGT  100

seq1  GAAAGGCGAAACAG-CCCGTC-AGGATTGTGCTATACATTTAGCGCAACG  140
      |||||||||||||| |||||| ||||||||||||||||||||||||||||
seq2  GAAAGGCGAAACAGCCCCGTCAAGGATTGTGCTATACATTTAGCGCAACG  150

seq1  TCTGATGGCAATGGCG-AATGAGCATGCTCTCTTCCCCTCACAACTGACA  189
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGATGGCAATGGCGAAATGAGCATGCTCTCTTCCCCTCACAACTGACA  200

seq1  CCGCAACCACACTGCAGGCAGCCACAGGGCAGGGCAAGGATTGATCTGAA  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAACCACACTGCAGGCAGCCACAGGGCAGGGCAAGGATTGATCTGAA  250

seq1  ACTTGTAACCATGCAAAGATGCTATCTCCTCTGAACTGGGCTCTTTAT-A  288
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTTGTAACCATGCAAAGATGCTATCTCCTCTGAACTGGGCTCTTTATAA  300

seq1  AATCTCAAAATCATTATTATTACTTAACTCTACCTTGAGAATTAAAGCAC  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAAATCATTATTATTACTTAACTCTACCTTGAGAATTAAAGCAC  350

seq1  GTGCCCACAAATTTAAAAATCAACAAAAACTACTTCTGAGACAATATCTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACAAATTTAAAAATCAACAAAAACTACTTCTGAGACAATATCTA  400

seq1  TCAGTTTTCCCTTTTTATACATGTACATACATGTCCAGATGTGTGTGTGT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCCCTTTTTATACATGTACATACATGTCCAGATGTGTGTGTGT  450

seq1  TCAGTTAGCGTGGGCTCACATGTGGGAGTCAGAGGACAGCCTTGGGTGTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGCGTGGGCTCACATGTGGGAGTCAGAGGACAGCCTTGGGTGTT  500

seq1  GCTCCTTGCTTCCCAACGTGCTTTTAAGGCCGTATCTCTCGCTGTGCATC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTGCTTCCCAACGTGCTTTTAAGGCCGTATCTCTCGCTGTGCATC  550

seq1  CCTGTGACCACCAGGCTACCTGGCCCCTGAGCTTTCCAGGATTCTCCTGT  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACCACCAGGCTACCTGGCCCCTGAGCTTTCCAGGATTCTCCTGT  600

seq1  CAGCCTCCCCTCATGACAGATGCGCTGGGATTACATACGTGTGCTGTCAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCCCCTCATGACAGATGCGCTGGGATTACATACGTGTGCTGTCAC  650

seq1  ATCTGACTTTATATGAGTTGTGGGGATCTGAACTCTGTCGTTTGTGCTGT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACTTTATATGAGTTGTGGGGATCTGAACTCTGTCGTTTGTGCTGT  700

seq1  TGTGGCAAAGCTCTCTCTATCTGCCATCTCCTTGGCCTGAGAAGACTGTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAAGCTCTCTCTATCTGCCATCTCCTTGGCCTGAGAAGACTGTG  750

seq1  TTCTGAAGGTTCCTACAATTACTAAAACAATACTCTGTGAGTTCCCTGGT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGGTTCCTACAATTACTAAAACAATACTCTGTGAGTTCCCTGGT  800

seq1  GCCCTCCCTTTTCTTTCTCTCTGCCTTTGTCTTCTCTCAAGCAAATCTTC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCTTTTCTTTCTCTCTGCCTTTGTCTTCTCTCAAGCAAATCTTC  850

seq1  AGGGAACTCAGAGCCTTCAATGCATTTTGTGCATTCAGAGTCTCAGCTAT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTCAGAGCCTTCAATGCATTTTGTGCATTCAGAGTCTCAGCTAT  900

seq1  GTTGGGGCTCTCTAACACCCCAGCCCTCACCTTCCTGGTCACTGACTCTC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGCTCTCTAACACCCCAGCCCTCACCTTCCTGGTCACTGACTCTC  950

seq1  TGTTGGTGTCCCTGAGCCCTGTCCCTTCAACTAGATTATGAATTC  983
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGTCCCTGAGCCCTGTCCCTTCAACTAGATTATGAATTC  995

seq1: chr19_44357188_44357562
seq2: B6Ng01-217G18.g_67_441

seq1  GAATTCACACAATCATTCGGCACAAGCTCCCTTTGTTCTTCAAGGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACAATCATTCGGCACAAGCTCCCTTTGTTCTTCAAGGACCCA  50

seq1  ACTCAGTCTGACCACGTGACCATCTTAATATCCAACCACACCTAAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTCTGACCACGTGACCATCTTAATATCCAACCACACCTAAGGCTT  100

seq1  AGGTCGTACACTGACGTCAGCAAAAGCAGGTCTTCCATCTCTGCTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCGTACACTGACGTCAGCAAAAGCAGGTCTTCCATCTCTGCTCTTCC  150

seq1  AGCAGCAGCACACTGTCCTGTAAAAAGCTTCCTCCTCAAGGCCAGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGCACACTGTCCTGTAAAAAGCTTCCTCCTCAAGGCCAGCTTTC  200

seq1  TCCTCTCGGGGAGCAGGGGAGAGAATGGAGACTGAACCTAGAACCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCGGGGAGCAGGGGAGAGAATGGAGACTGAACCTAGAACCTTTCA  250

seq1  CATGCTAGGCAAGGGCTCCACCCCTGAGCCTCATTACCCAGGTCCAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGGCAAGGGCTCCACCCCTGAGCCTCATTACCCAGGTCCAGATT  300

seq1  TCTCTTACAAGGACCTGCCAGTAACCAAGTACCAGGCTATAAGACCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACAAGGACCTGCCAGTAACCAAGTACCAGGCTATAAGACCTGTG  350

seq1  AAAAAGGAGAGGGGGGGAGGGGAGG  375
      |||||||||||||||||||||||||
seq2  AAAAAGGAGAGGGGGGGAGGGGAGG  375