BAC Information

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BAC

Clone NameB6Ng01-218C01
Chromosome19 (Build37)
Map Location 7,600,058 - 7,601,189
singlet/doubletsinglet
Overlap gene5730596K20Rik
Upstream geneRps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547
Downstream geneHrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218C01.bB6Ng01-218C01.g
ACCGA034339GA034340
length1,1371,111
definitionB6Ng01-218C01.b B6Ng01-218C01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactatgtagatcaggctggctgtgaactcagagatgccgacctc
tgtttctggaatggcaggattgaaggtatataccaccatggccgagatag
aactgtaagatacagttacagggtttaagtcatgcttttttaaatatgaa
aaggcaagtccagaaggactagggatatgcggctcaattacagaggcttc
cctagcatatatgaatatgtaagtgtggtcttcagcattgagcaaaaaac
aaaaagcaaccagacaccaaactcaagttcaaacccagacttagacccta
atctccaaattccaaaacccaaattattgaaaatatgtaaaccattataa
cagtcagaaaagcacaaatatattagtatgttatcggtttattgtttttt
ttttgtttgtttgttttgttttggcgttggcttttggtttttggtttttg
gtttttcaaaacaacatttccctgtgtaaccctgggtgtcctggaactca
attctgtagaccaggctggtgtcaaactcacagagacccacataccaagg
cctgggtttggtagtcgaggtcagaagacaggtttgtggaggtgagtctc
ttctacactttagtgggatccaggtcagtagacttgcatagccaaacctc
ttttacccactgaggcatattatacctacttctttttggagccagtgtct
tgctgtgtatggcctataactcattataatagcccatactgaccttgaac
tcagtccttctgcctcagtctctcaagtgctggattttcagcatgcacct
tcatgcatggctttattgagtttcagtgaagaataaattctaagttgaaa
aaagtagatgatttgtaaatacttagctaggactagcttatgagtcacac
aggtttttaaaagttttggagatgggttcttgatgcacagaattcaagct
ggcctctatcttttagatagcctgggatggcctcatcctcccaagtccta
gtattgtaggtatgtgtcaccgtatcctggcaccacaatgtgaatgactt
tatttgtggatacacttgtaagtggaactgttgtgggggattaactcacc
aggtaaaggttctgctgcccaggcctgaccattgaaa
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatctagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactctgccggggccttagcaaa
cacagaagtggatgctcacagtcagctaatggatggatcatagggctccc
caatggaaggagctagagaaagtagccaaggagctaaagggatctgcaac
ctcttataggtggaaccacattaatgtactctacccagtaccccgagctt
cttgtactcctaggcttgcatatatatcaaaaagatatggcccttagctc
tcggcatccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7600058_7601189
seq2: B6Ng01-218C01.b_42_1178

seq1  GAATTCACTATGTAGATCAGGCTGGCTGTGAACTCAGAGATGCCGACCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGATCAGGCTGGCTGTGAACTCAGAGATGCCGACCTC  50

seq1  TGTTTCTGGAATGGCAGGATTGAAGGTATATACCACCATGGCCGAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGGAATGGCAGGATTGAAGGTATATACCACCATGGCCGAGATAG  100

seq1  AACTGTAAGATACAGTTACAGGGTTTAAGTCATGCTTTTTTAAATATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAGATACAGTTACAGGGTTTAAGTCATGCTTTTTTAAATATGAA  150

seq1  AAGGCAAGTCCAGAAGGACTAGGGATATGCGGCTCAATTACAGAGGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAGTCCAGAAGGACTAGGGATATGCGGCTCAATTACAGAGGCTTC  200

seq1  CCTAGCATATATGAATATGTAAGTGTGGTCTTCAGCATTGAGCAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCATATATGAATATGTAAGTGTGGTCTTCAGCATTGAGCAAAAAAC  250

seq1  AAAAAGCAACCAGACACCAAACTCAAGTTCAAACCCAGACTTAGACCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAACCAGACACCAAACTCAAGTTCAAACCCAGACTTAGACCCTA  300

seq1  ATCTCCAAATTCCAAAACCCAAATTATTGAAAATATGTAAACCATTATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAAATTCCAAAACCCAAATTATTGAAAATATGTAAACCATTATAA  350

seq1  CAGTCAGAAAAGCACAAATATATTAGTATGTTATCGGTTTATTGTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGAAAAGCACAAATATATTAGTATGTTATCGGTTTATTGTTTTTT  400

seq1  TTTTGTTTGTTTGTTTTGTTTTGGCGTTGGCTTTTGGTTTTTGGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTTTGTTTTGGCGTTGGCTTTTGGTTTTTGGTTTTTG  450

seq1  GTTTTTCAAAACAACATTTCCCTGTGTAACCCTGGGTGTCCTGGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAAAACAACATTTCCCTGTGTAACCCTGGGTGTCCTGGAACTCA  500

seq1  ATTCTGTAGACCAGGCTGGTGTCAAACTCACAGAGACCCACATACCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGACCAGGCTGGTGTCAAACTCACAGAGACCCACATACCAAGG  550

seq1  CCTGGGTTTGGTAGTCGAGGTCAGAAGACAGGTTTGTGGAGGTGAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTTGGTAGTCGAGGTCAGAAGACAGGTTTGTGGAGGTGAGTCTC  600

seq1  TTCTACACTTTAGTGGGATCCAGGTCAGTAGACTTGCATAGCCAAACCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACACTTTAGTGGGATCCAGGTCAGTAGACTTGCATAGCCAAACCTC  650

seq1  TTTTACCCACTGAGGCATATTATACCTACTTCTTTTTGGAGCCAGTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCCACTGAGGCATATTATACCTACTTCTTTTTGGAGCCAGTGTCT  700

seq1  TGCTGTGTATGGCCTATAACTCATTATAATAGCCCATACTGACCTTGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTATGGCCTATAACTCATTATAATAGCCCATACTGACCTTGAAC  750

seq1  TCAGTCCTTCTGCCTCAGTCTCTCAAGTGCTGGATTTTCAGCATGCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTCTGCCTCAGTCTCTCAAGTGCTGGATTTTCAGCATGCACCT  800

seq1  TCATGCATGGCTTTATTGAGTTTCAGTGAAGAATAAATTCTAAGTTGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCATGGCTTTATTGAGTTTCAGTGAAGAATAAATTCTAAGTTGAAA  850

seq1  AAAGTAGATGATTTGTAAATACTTAGCTAGGACTAGCTTATGAGTCACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGATGATTTGTAAATACTTAGCTAGGACTAGCTTATGAGTCACAC  900

seq1  AGGTTTTTAAAAGTTTTGGAGATGGGTTCTTGATGCACAGAATTCAAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTAAAAGTTTTGGAGATGGGTTCTTGATGCACAGAATTCAAGCT  950

seq1  GGCCTCTATCTTTTTAGATAGCCTGGGATGGCCTCATCCTCCCAAGTCCT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTATC-TTTTAGATAGCCTGGGATGGCCTCATCCTCCCAAGTCCT  999

seq1  AGTATTGTAGGTATGTGTCACCGTAT-CTGGCACCAC-ATGTGATTGACT  1048
      |||||||||||||||||||||||||| |||||||||| |||||| |||||
seq2  AGTATTGTAGGTATGTGTCACCGTATCCTGGCACCACAATGTGAATGACT  1049

seq1  TTA-TTGT-GATACACTTGTAAGTGGAACTGTTGTGGGG--ATAGCTCAG  1094
      ||| |||| ||||||||||||||||||||||||||||||   || |||| 
seq2  TTATTTGTGGATACACTTGTAAGTGGAACTGTTGTGGGGGATTAACTCAC  1099

seq1  CAGGTAAAGGTTCCTGCTG-CCAGGCCTGACGATTGAAA  1132
      |||||||||||| |||||| ||||||||||| |||||||
seq2  CAGGTAAAGGTT-CTGCTGCCCAGGCCTGACCATTGAAA  1137