BAC Information

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BAC

Clone NameB6Ng01-219G09
Chromosome19 (Build37)
Map Location 43,725,303 - 43,918,511
singlet/doubletdoublet
Overlap geneSlc25a28, Entpd7, Cox15, Cutc, Abcc2
Upstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3, LOC100042700, LOC100043245
Downstream geneDnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219G09.bB6Ng01-219G09.g
ACCGA035247GA035248
length1,114532
definitionB6Ng01-219G09.b B6Ng01-219G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,917,382 - 43,918,511)(43,725,303 - 43,725,839)
sequence
gaattctggatctgtctgatgccttcccttggcttcacagccccttggag
gaagttctcatacaccaggagcaaatgttacaggaacagatgttacagca
tgtctcgtgctaagtatggtacttcaactcccagggacagcaggaggaga
cacaaaacttaagtgctcttggaaatcttgtcaatgtcaccagagccact
ggagctcaccattcttagtggcctctagaccaccaaccaaaatcatgacc
aaattaattaaagcaagcttttattttattcacgtgtataggctacctcc
ccagctttggatgtgagaaagataaggtttttttttttttttttaatata
tgtcttagttagggctcccgttcctgtgaaaagacaccatgaccaaggca
actcttttttttttttttaagatttatttattttatatatgtgagtacac
tgtagctgttttcagacacaccagaagagggcgtccaaccccatcacaga
tggttgtgagccaccatgtgggtgctccgggggattgtgctcccttatct
gctcagactcttcctcggcttggacctcctccccctaacttcgcaaccag
tgctgtagcgagtctctcagcatccgtctccactgtcaccatctccgctc
agcagatgctcctcctctgagccacgccccgactgccaggctctggttat
gctgggcatctgaataacccagtgtctaccctttccatccccagtccctt
aattacaatagcaaaatcccttctttgtaacagaacatgacatattgtca
ggttctgtggattccattgtaagcatctctatcataagaatatttttgag
gtaaaattttgatgatggaaataacagtctgaaaaaaaacgttttaacaa
agaccttagagattacatattttagggaacggaggtaacaaaatctgtat
gactcaactctgcattgcaacatgaaagcagcacggctacataaaaataa
aggaaaagaactgtactcgaaaacaagtgaatataccagtctggttttaa
cattttattttctttaaggctacctttgtttattttaacttaaagagaga
acgcccaggtacat
ttcttatacttaagtcactattttttttttcagatcttagcttctcaaag
ggaaactaatcataattaaccataatgcttatcattattgtattatcgta
ttattagtctataaccccgctccctcttaggtccctcttcaggcctacat
ggccagcatcggggggtgggggattcaagaggcttgtcaggttctgattt
ttctggccagtccatttatgcctttaagggagaggggagcccacgttcct
tggcccagtaacatgcctggcatcctcttgctcttgtttgcccgagtctc
tgagatcctgactcctggaattctcacagtgcgtgggactatggcagctt
ggcaggaggagggggcgtgatccaagtggaggcactgagcggggaagaca
cagaggtttctgttggggtgtgggagatcagaaggtcggcttgaggggat
ggggaaccttgtgatgcggtctgcaaggcctgggagaagaacctgtactt
taatcctggagggaaaagaacgcctctccatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43917382_43918511
seq2: B6Ng01-219G09.b_45_1158 (reverse)

seq1  ATGTACACTAGGCGTTCTCTCTTTTAGGTAAAAATAAACATAAAGGTAGA  50
      |||||| || ||||||||||| |||| || |||||||||  |||||||| 
seq2  ATGTAC-CTGGGCGTTCTCTC-TTTAAGTTAAAATAAAC--AAAGGTAG-  45

seq1  CCTTTAAAAAGAAAATAAAAATTGTTAAAAACAGACTGGTATATTCAACT  100
      ||||   |||||||||||||  |||||||| ||||||||||||||||   
seq2  CCTT---AAAGAAAATAAAA--TGTTAAAACCAGACTGGTATATTCA--C  88

seq1  TTGTTTTCGAGTACAGTTCTTTTCCTTTATTTTTTATGTTAGCCGTGCTT  150
      ||||||||||||||||||||||||||||| |||||||| ||||||||| |
seq2  TTGTTTTCGAGTACAGTTCTTTTCCTTTA-TTTTTATG-TAGCCGTGC-T  135

seq1  GCTTTCATGTTGCAATGCAGAGTTGAGTCATAACAGATTTTGTTACCTCC  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTTTCATGTTGCAATGCAGAGTTGAGTCAT-ACAGATTTTGTTACCTCC  184

seq1  GTTCCCTAAAATATGTAATCTCTAAGGTCTTTGTTAAAACGTTTTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTAAAATATGTAATCTCTAAGGTCTTTGTTAAAACGTTTTTTTTC  234

seq1  AGACTGTTATTTCCATCATCAAAATTTTACCTCAAAAATATTCTTATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTATTTCCATCATCAAAATTTTACCTCAAAAATATTCTTATGAT  284

seq1  AGAGATGCTTACAATGGAATCCACAGAACCTGACAATATGTCATGTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCTTACAATGGAATCCACAGAACCTGACAATATGTCATGTTCTG  334

seq1  TTACAAAGAAGGGATTTTGCTATTGTAATTAAGGGACTGGGGATGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAAGAAGGGATTTTGCTATTGTAATTAAGGGACTGGGGATGGAAAG  384

seq1  GGTAGACACTGGGTTATTCAGATGCCCAGCATAACCAGAGCCTGGCAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACACTGGGTTATTCAGATGCCCAGCATAACCAGAGCCTGGCAGTC  434

seq1  GGGGCGTGGCTCAGAGGAGGAGCATCTGCTGAGCGGAGATGGTGACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGGCTCAGAGGAGGAGCATCTGCTGAGCGGAGATGGTGACAGTG  484

seq1  GAGACGGATGCTGAGAGACTCGCTACAGCACTGGTTGCGAAGTTAGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACGGATGCTGAGAGACTCGCTACAGCACTGGTTGCGAAGTTAGGGGG  534

seq1  AGGAGGTCCAAGCCGAGGAAGAGTCTGAGCAGATAAGGGAGCACAATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCCAAGCCGAGGAAGAGTCTGAGCAGATAAGGGAGCACAATCCC  584

seq1  CCGGAGCACCCACATGGTGGCTCACAACCATCTGTGATGGGGTTGGACGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGCACCCACATGGTGGCTCACAACCATCTGTGATGGGGTTGGACGC  634

seq1  CCTCTTCTGGTGTGTCTGAAAACAGCTACAGTGTACTCACATATATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCTGGTGTGTCTGAAAACAGCTACAGTGTACTCACATATATAAAA  684

seq1  TAAATAAATCTTAAAAAAAAAAAAAAGAGTTGCCTTGGTCATGGTGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCTTAAAAAAAAAAAAAAGAGTTGCCTTGGTCATGGTGTCTT  734

seq1  TTCACAGGAACGGGAGCCCTAACTAAGACATATATTAAAAAAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGAACGGGAGCCCTAACTAAGACATATATTAAAAAAAAAAAAAA  784

seq1  AAACCTTATCTTTCTCACATCCAAAGCTGGGGAGGTAGCCTATACACGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTATCTTTCTCACATCCAAAGCTGGGGAGGTAGCCTATACACGTG  834

seq1  AATAAAATAAAAGCTTGCTTTAATTAATTTGGTCATGATTTTGGTTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAAGCTTGCTTTAATTAATTTGGTCATGATTTTGGTTGGTG  884

seq1  GTCTAGAGGCCACTAAGAATGGTGAGCTCCAGTGGCTCTGGTGACATTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGGCCACTAAGAATGGTGAGCTCCAGTGGCTCTGGTGACATTGA  934

seq1  CAAGATTTCCAAGAGCACTTAAGTTTTGTGTCTCCTCCTGCTGTCCCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTCCAAGAGCACTTAAGTTTTGTGTCTCCTCCTGCTGTCCCTGG  984

seq1  GAGTTGAAGTACCATACTTAGCACGAGACATGCTGTAACATCTGTTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAAGTACCATACTTAGCACGAGACATGCTGTAACATCTGTTCCTG  1034

seq1  TAACATTTGCTCCTGGTGTATGAGAACTTCCTCCAAGGGGCTGTGAAGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTGCTCCTGGTGTATGAGAACTTCCTCCAAGGGGCTGTGAAGCC  1084

seq1  AAGGGAAGGCATCAGACAGATCCAGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  AAGGGAAGGCATCAGACAGATCCAGAATTC  1114

seq1: chr19_43725303_43725839
seq2: B6Ng01-219G09.g_69_606

seq1  GAATTCTTCTTATACTTAAGTCACTATTTTTTTTTTCAGATCTTAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTATACTTAAGTCACTATTTTTTTTTTCAGATCTTAGCTTC  50

seq1  TCAAAGGGAAACTAATCATAATTAACCATAATGCTTATCATTATTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGGAAACTAATCATAATTAACCATAATGCTTATCATTATTGTATT  100

seq1  ATCGTATTATTAGTCTATAACCCCGCTCCCTCTTAGGTCCCTCTTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTATTATTAGTCTATAACCCCGCTCCCTCTTAGGTCCCTCTTCAGGC  150

seq1  CTACATGGCCAGCATCGGGGGGTGGGGGATTCAAGAGGCTTGTCAGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGGCCAGCATCGGGGGGTGGGGGATTCAAGAGGCTTGTCAGGTTC  200

seq1  TGATTTTTCTGGCCAGTCCATTTATGCCTTTAAGGGAGAGGGGAGCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTGGCCAGTCCATTTATGCCTTTAAGGGAGAGGGGAGCCCAC  250

seq1  GTTCCTTGGCCCAGTAACATGCCTGGCATCCTCTTGCTCTTGTTTGCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTGGCCCAGTAACATGCCTGGCATCCTCTTGCTCTTGTTTGCCCG  300

seq1  AGTCTCTGAGATCCTGACTCCTGGAATTCTCACAGTGCGTGGGACTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGAGATCCTGACTCCTGGAATTCTCACAGTGCGTGGGACTATGG  350

seq1  CAGCTTGGCAGGAGGAGGGGGCGTGATCCAAGTGGAGGCACTGAGCGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGGCAGGAGGAGGGGGCGTGATCCAAGTGGAGGCACTGAGCGGGG  400

seq1  AAGACACAGAGGTTTCTGTTGGGGTGTGGGAGATCAGAAGGTCGGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACACAGAGGTTTCTGTTGGGGTGTGGGAGATCAGAAGGTCGGCTTGA  450

seq1  GGGGATGGGGAACCTTGTGATGCGGTCTGCAAGGCCTGGGAGAAGAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGGGAACCTTGTGATGCGGTCTGCAAGGCCTGGGAGAAGAACCT  500

seq1  GTAC-TTAATCCTGGAGGGAAAAGAACGCCTCTCCATT  537
      |||| |||||||||||||||||||||||||||||||||
seq2  GTACTTTAATCCTGGAGGGAAAAGAACGCCTCTCCATT  538