BAC Information

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BAC

Clone NameB6Ng01-219J04
Chromosome19 (Build37)
Map Location 46,608,582 - 46,758,741
singlet/doubletdoublet
Overlap geneArl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359
Upstream genePoll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8
Downstream gene2010012O05Rik, As3mt, Cnnm2, Nt5c2, Ina, Pcgf6, LOC100042842, Taf5, Usmg5, Pdcd11, 2810048G17Rik, EG546729, EG240669, EG629389, Neurl, EG329070, Sh3pxd2a, Obfc1, Slk, Col17a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219J04.bB6Ng01-219J04.g
ACCGA035368GA035369
length1,098453
definitionB6Ng01-219J04.b B6Ng01-219J04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,757,666 - 46,758,741)(46,608,582 - 46,609,040)
sequence
gaattccatctgtaaaccaggctggcttcaaactcacagagatcctcctg
cttctgcctcctaggtgctgagattaaaagcacgtagccactgcccggtc
tattttcttaaaaaattatggacaatcagcatcatttcccttaaatgttt
ggtatgaatcattagtgacatcatctgcattagtctttttgttgttggga
acttatttgggggactaatttagttatttttgttcatttgttgagaaagg
atatcactatttagcttagcctggtctcaaactcatgatcctcctgcctc
agcctcctaattgctgagattacaagcttgtaccactatatctcctttac
tcttattttcaatgttataacaaaatatttgaagtaggataacctgtaaa
gtaaagagatttctttcgctcacagctttggaggccaaaagttcaaatcg
aattgtaaggttctggcgtggactctcaggcacttctcaaaggaggaagc
cagaggttgactagggtcccataatcccttccaaatatactcccctgact
gacctaagaacctttcatcaatgaagagcacatttccaacacataagacg
aaaaaggatccaggcggtggctagagaggtgactcagtggttaaaagcac
acactatgttttcagaggacctgagtggccttcctggctcccacatcagg
cagctcccaaaacctgtaactccagctgcaggagcatccagggcctctgg
cacctgaactcacatgcatagacacagacaccgtaacagactcatagttc
aaaataaaataaaataaatgttaaaaaaaataatcagaaaacagtattct
attttcctggttctttctgtgggagaattattgattcgacatcttagaca
aagatcagtttaaactatttttttctttctatatgagtttcaataaatat
tgtttttaaacattatatgcagagatatcatgatttataggattccttta
tatcattttaaaaggtcattttacctatttaagaaggtatcgtgctgggc
tgtagtagcacatgccttatcctagcacttgggaaaacaaagcgctgg
ataggtttgtttaatggttgaaccttttattgttaagaactggtttgacc
gattccctgcacatttgatctttattataggaacgacgctctttggtggg
agcagtctcccctctcctttccctaccaatcttgctgaaactaatttgaa
ttgattagcttcgatttattaatagagactagagacgccgggtgtggtgg
cgcacgcctttaatcccagcacttgggaggcaaaggcaggtggatttctg
agttcgaggccagcctggtctacagagtgagttccaggacagccagggct
acacagagaaaccctgtcttgaaaaaaaaagaaaaaaaaaaatagagact
agacacaggggccttcaaacggggccttgtgtggcttcctagagaggaaa
taaatatctctgtgttgcaaaagtattctgaccatatctatggggttggg
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_46757666_46758741
seq2: B6Ng01-219J04.b_74_1143 (reverse)

seq1  CCAGCGCTTTTGTCTCCCAAGTGCTAGGATTAAAGGCATGTGCTACTACA  50
      ||||||||||  | ||||||||||||||||  ||||||||||||||||||
seq2  CCAGCGCTTTGTTTTCCCAAGTGCTAGGAT--AAGGCATGTGCTACTACA  48

seq1  GCCCAGCCACGAATTACTTTCTTAAATAGGTAAAATGACCTTTTAAAATG  100
      |||||| |||||  ||| ||||||||||||||||||||||||||||||||
seq2  GCCCAG-CACGA--TACCTTCTTAAATAGGTAAAATGACCTTTTAAAATG  95

seq1  ATAATAAAGGAATCCTATAAATCATGATATCTCTGCATATAATGTTTAAA  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-ATAAAGGAATCCTATAAATCATGATATCTCTGCATATAATGTTTAAA  144

seq1  AACAATATTTATTGAAACTCATATAGAAAGAAAAAAATAGTTTAAACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTTATTGAAACTCATATAGAAAGAAAAAAATAGTTTAAACTGA  194

seq1  TCTTTGTCTAAGATGTCGAATCAATAATTCTCCCACAGAAAGAACCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTAAGATGTCGAATCAATAATTCTCCCACAGAAAGAACCAGGA  244

seq1  AAATAGAATACTGTTTTCTGATTATTTTTTTTAACATTTATTTTATTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATACTGTTTTCTGATTATTTTTTTTAACATTTATTTTATTTTA  294

seq1  TTTTGAACTATGAGTCTGTTACGGTGTCTGTGTCTATGCATGTGAGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTATGAGTCTGTTACGGTGTCTGTGTCTATGCATGTGAGTTCA  344

seq1  GGTGCCAGAGGCCCTGGATGCTCCTGCAGCTGGAGTTACAGGTTTTGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGAGGCCCTGGATGCTCCTGCAGCTGGAGTTACAGGTTTTGGGA  394

seq1  GCTGCCTGATGTGGGAGCCAGGAAGGCCACTCAGGTCCTCTGAAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGATGTGGGAGCCAGGAAGGCCACTCAGGTCCTCTGAAAACATA  444

seq1  GTGTGTGCTTTTAACCACTGAGTCACCTCTCTAGCCACCGCCTGGATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCTTTTAACCACTGAGTCACCTCTCTAGCCACCGCCTGGATCCT  494

seq1  TTTTCGTCTTATGTGTTGGAAATGTGCTCTTCATTGATGAAAGGTTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGTCTTATGTGTTGGAAATGTGCTCTTCATTGATGAAAGGTTCTTA  544

seq1  GGTCAGTCAGGGGAGTATATTTGGAAGGGATTATGGGACCCTAGTCAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGTCAGGGGAGTATATTTGGAAGGGATTATGGGACCCTAGTCAACC  594

seq1  TCTGGCTTCCTCCTTTGAGAAGTGCCTGAGAGTCCACGCCAGAACCTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTCCTCCTTTGAGAAGTGCCTGAGAGTCCACGCCAGAACCTTAC  644

seq1  AATTCGATTTGAACTTTTGGCCTCCAAAGCTGTGAGCGAAAGAAATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCGATTTGAACTTTTGGCCTCCAAAGCTGTGAGCGAAAGAAATCTCT  694

seq1  TTACTTTACAGGTTATCCTACTTCAAATATTTTGTTATAACATTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTACAGGTTATCCTACTTCAAATATTTTGTTATAACATTGAAAAT  744

seq1  AAGAGTAAAGGAGATATAGTGGTACAAGCTTGTAATCTCAGCAATTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAAGGAGATATAGTGGTACAAGCTTGTAATCTCAGCAATTAGGA  794

seq1  GGCTGAGGCAGGAGGATCATGAGTTTGAGACCAGGCTAAGCTAAATAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGGCAGGAGGATCATGAGTTTGAGACCAGGCTAAGCTAAATAGTG  844

seq1  ATATCCTTTCTCAACAAATGAACAAAAATAACTAAATTAGTCCCCCAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTTCTCAACAAATGAACAAAAATAACTAAATTAGTCCCCCAAAT  894

seq1  AAGTTCCCAACAACAAAAAGACTAATGCAGATGATGTCACTAATGATTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCAACAACAAAAAGACTAATGCAGATGATGTCACTAATGATTCA  944

seq1  TACCAAACATTTAAGGGAAATGATGCTGATTGTCCATAATTTTTTAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAACATTTAAGGGAAATGATGCTGATTGTCCATAATTTTTTAAGAA  994

seq1  AATAGACCGGGCAGTGGCTACGTGCTTTTAATCTCAGCACCTAGGAGGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACCGGGCAGTGGCTACGTGCTTTTAATCTCAGCACCTAGGAGGCA  1044

seq1  GAAGCAGGAGGATCTCTGTGAGTTTG  1076
      ||||||||||||||||||||||||||
seq2  GAAGCAGGAGGATCTCTGTGAGTTTG  1070

seq1: chr19_46608582_46609040
seq2: B6Ng01-219J04.g_68_526

seq1  GAATTCATAGGTTTGTTTAATGGTTGAACCTTTTATTGTTAAGAACTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGGTTTGTTTAATGGTTGAACCTTTTATTGTTAAGAACTGGT  50

seq1  TTGACCGATTCCCTGCACATTTGATCTTTATTATAGGAACGACGCTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCGATTCCCTGCACATTTGATCTTTATTATAGGAACGACGCTCTTT  100

seq1  GGTGGGAGCAGTCTCCCCTCTCCTTTCCCTACCAATCTTGCTGAAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGCAGTCTCCCCTCTCCTTTCCCTACCAATCTTGCTGAAACTAA  150

seq1  TTTGAATTGATTAGCTTCGATTTATTAATAGAGACTAGAGACGCCGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGATTAGCTTCGATTTATTAATAGAGACTAGAGACGCCGGGTG  200

seq1  TGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAAAGGCAGGTGGA  250

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC  300

seq1  AGGGCTACACAGAGAAACCCTGTCTTGAAAAAAAAAGAAAAAAAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACACAGAGAAACCCTGTCTTGAAAAAAAAAGAAAAAAAAAAATA  350

seq1  GAGACTAGACACAGGGGCCTTCAAACGGGGCCTTGTGTGGCTTCCTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTAGACACAGGGGCCTTCAAACGGGGCCTTGTGTGGCTTCCTAGAG  400

seq1  AGGAAATAAATATCTCTGTGTTGCAAAAGTATTCTGACCATATCTATGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAATATCTCTGTGTTGCAAAAGTATTCTGACCATATCTATGGG  450

seq1  GTTGGGGGG  459
      |||||||||
seq2  GTTGGGGGG  459