BAC Information

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BAC

Clone NameB6Ng01-220B05
Chromosome19 (Build37)
Map Location 42,582,526 - 42,583,691
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1
Downstream geneD19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B05.bB6Ng01-220B05.g
ACCGA035726GA035727
length1,1921,175
definitionB6Ng01-220B05.b B6Ng01-220B05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcctctgaagaaacagactgggaggaagaagcagctcattatga
gaaaaaagggtaccagccaggtaaagtgctagctaatcagttaaggaagc
caaaagcggctggcgaaggccagtttgctgattagcctcagggcagtcgg
cttcaaggtccgccctatgcggagtccccgccctgcgtagtgcgtcagcc
ctgcgcagagaggcaatgcgcagagaggcagtacgcagactcattcattc
ccagagaggaacaaaggaaaatacaacaggcatttccggtctttgaagga
gccgagggtgggcgtgtccacgctccggtagaatacttacaaattaaaga
gcttgccgagtcggtccgtaaatacggaaccaatgctaattttaccttgg
tgcagttagacaggcttgccggcatggcactaactcctgccgactggcaa
acggttgtaaaagccgctctccctagtatgggcaaatatatggaatggag
agcgctttggcacgaagctgcacaagcgcaggcccgagcaaacgcagctg
ctttgactccagagcagagagattggacttttgacttgttaacgggtcag
ggagcttattctgctgatcagacaaactaccattggggagcttatgccca
gatttcttccacggctattagggcctggaaggcgctctctcgagcaggtg
aaaccactgggcagttaacaaagataatccagggacctcaggaatccttc
tcagattttgtggccagaatgacagaggcagcagagcgtatttttggaga
gtcagagcaagctgcgcctctgatagaacagctaatctatgagcaagcca
caaaggagtgccgagcggccatagccccaagaagaacaaaggcttacaag
actggctcagggtctgtcgagagctgggggacctctcaccaatgcaggct
tagcggccgccatccttcaatctcagaaccgctccatggcagaataatca
gaggacatgttttatgcggaagctgggcatttagagattgcaaagctcag
ataacagggagggactctcactctttgctctagtgtgccaaggtatcata
gagcgacagtgtcgctctgtgaaggattaaggcgaatctcccactggatg
tcatcagctatggtccaaaaacggggttcatcgggggcatcg
gaattcatcacctctgctgggacagcagcttctgcccttctgccatatat
aacagcaaacgttcctttctctttatgccaactcctcaggcctcgctttc
ttcagctcttcacattaaaaaaaaaaaaaaatccgggctggccatttttc
atgaattttctgctgggttgcctttcctctgacttttcactttctcggtg
ctaaaagaaaggaaagaacatgaatctgacgggggaaaaaaaagtatcaa
aaaagctgaagtcagagagtacagtacaggcaggattccagaagaggcac
ctgaagagactcggtggcttagtgtgggggtggagtcatcaggaaaaagc
caaactcatagcgagtgggaagcagtgactatgagagggtcagaccaaca
gatcaaactgttccaaacctgttgcttgcttgcttgcttgcttgctcgct
cgctcgctcgctcgctcgcttgcttgctcgctcgcttgctttacctctac
ctagcctcagaaaagtgtataaaatagggcaggtatgataatcaataatc
acagagttccaacagagacagaacccttgagcgaggtcacatcagacaaa
tgctactattggcacctggggaaagagaaacagagaaaagaaggtgagag
aagaagcaattaccactgaaacagtctagcacattctacctgcctcgcca
cctcctgagcctatggctcagcaggagagggaatgaaatgaacgcaaata
tgagtgaccaggctcagcacacaacagtgctcatatacattgatgggttt
cgatttaatggaaccctctgaggcaggtactatcattatcccactctaca
gatgaagaaactgaggcgtagagagcttgagtctcgtctgtactctcatg
gtgagtacgttgttagaggcagggatgctgaattagtccatctagctgcc
agccaggaacctctttgggctacagtagggatgtaaatttgctgtcctct
cgaccttactttcccaacgcctcccttaggccaggctgagagtgagtctg
attcaagaagaagtccatttttcacaccattaggccaaccaatgcaacag
caattcttggacaccacaactacgacctgttatctggtttgaatgctagg
acatctcaggtaaaattgggggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_42582526_42583691
seq2: B6Ng01-220B05.g_67_1241 (reverse)

seq1  TCA--CCCAAATTTCCCTG-GATGTCCTAGCA-TCAAAACAGATAACAGG  46
      |||  ||||| ||| |||| |||||||||||| ||||| |||||||||||
seq2  TCACCCCCAATTTTACCTGAGATGTCCTAGCATTCAAACCAGATAACAGG  50

seq1  TTCTGTAGTTGT-GTGTCCAAAGAATTGGTTTGTTTGCATTGGGTGCCCT  95
      |   |||||||| |||||| |||||||| |    ||||||||| || |||
seq2  T--CGTAGTTGTGGTGTCC-AAGAATTGCT---GTTGCATTGGTTGGCCT  94

seq1  -ATGGTGTGAAAAATGGGACTCT--CTGAACCAGACTCACTCTCAGCCTG  142
       ||||||||||||||||   |||   |||| |||||||||||||||||||
seq2  AATGGTGTGAAAAATGGACTTCTTCTTGAATCAGACTCACTCTCAGCCTG  144

seq1  GC--TAGGGAGGCGTTTGGGAAGTAAGGTCGAGAGGACAGC-AATTTACA  189
      ||   ||||||||||| || ||||||||||||||||||||| ||||||||
seq2  GCCTAAGGGAGGCGTTGGGAAAGTAAGGTCGAGAGGACAGCAAATTTACA  194

seq1  TCCCCTACTGTAG-CCAAAGA-GTTCCTGGCT-GCAGCTAGATGGACTAA  236
      | ||||||||||| ||||||| |||||||||| |||||||||||||||||
seq2  T-CCCTACTGTAGCCCAAAGAGGTTCCTGGCTGGCAGCTAGATGGACTAA  243

seq1  TTCAGCAT-CCTGCCTCTAAC-ACGTACTCACCATGAGAGTACAGACGAG  284
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  TTCAGCATCCCTGCCTCTAACAACGTACTCACCATGAGAGTACAGACGAG  293

seq1  ACTCAAGCTCTCTACGCCTCAGTTTCTTCATCTGTAGAGTGGGATAATGA  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCTCTCTACGCCTCAGTTTCTTCATCTGTAGAGTGGGATAATGA  343

seq1  TAGTACCTGCCTCAGAGGGTTCCATTAAATCGAAACCCATCAATGTATAT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTGCCTCAGAGGGTTCCATTAAATCGAAACCCATCAATGTATAT  393

seq1  GAGCACTGTTGTGTGCTGAGCCTGGTCACTCATATTTGCGTTCATTTCAT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTGTTGTGTGCTGAGCCTGGTCACTCATATTTGCGTTCATTTCAT  443

seq1  TCCCTCTCCTGCTGAGCCATAGGCTCAGGAGGTGGCGAGGCAGGTAGAAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCCTGCTGAGCCATAGGCTCAGGAGGTGGCGAGGCAGGTAGAAT  493

seq1  GTGCTAGACTGTTTCAGTGGTAATTGCTTCTTCTCTCACCTTCTTTTCTC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGACTGTTTCAGTGGTAATTGCTTCTTCTCTCACCTTCTTTTCTC  543

seq1  TGTTTCTCTTTCCCCAGGTGCCAATAGTAGCATTTGTCTGATGTGACCTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTTTCCCCAGGTGCCAATAGTAGCATTTGTCTGATGTGACCTC  593

seq1  GCTCAAGGGTTCTGTCTCTGTTGGAACTCTGTGATTATTGATTATCATAC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGGTTCTGTCTCTGTTGGAACTCTGTGATTATTGATTATCATAC  643

seq1  CTGCCCTATTTTATACACTTTTCTGAGGCTAGGTAGAGGTAAAGCAAGCG  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTATTTTATACACTTTTCTGAGGCTAGGTAGAGGTAAAGCAAGCG  693

seq1  AGCGAGCAAGCAAGCGAGCGAGCGAGCGAGCGAGCGAGCAAGCAAGCAAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCAAGCAAGCGAGCGAGCGAGCGAGCGAGCGAGCAAGCAAGCAAG  743

seq1  CAAGCAAGCAACAGGTTTGGAACAGTTTGATCTGTTGGTCTGACCCTCTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGCAACAGGTTTGGAACAGTTTGATCTGTTGGTCTGACCCTCTC  793

seq1  ATAGTCACTGCTTCCCACTCGCTATGAGTTTGGCTTTTTCCTGATGACTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACTGCTTCCCACTCGCTATGAGTTTGGCTTTTTCCTGATGACTC  843

seq1  CACCCCCACACTAAGCCACCGAGTCTCTTCAGGTGCCTCTTCTGGAATCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACACTAAGCCACCGAGTCTCTTCAGGTGCCTCTTCTGGAATCC  893

seq1  TGCCTGTACTGTACTCTCTGACTTCAGCTTTTTTGATACTTTTTTTTCCC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACTGTACTCTCTGACTTCAGCTTTTTTGATACTTTTTTTTCCC  943

seq1  CCGTCAGATTCATGTTCTTTCCTTTCTTTTAGCACCGAGAAAGTGAAAAG  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGATTCATGTTCTTTCCTTTCTTTTAGCACCGAGAAAGTGAAAAG  993

seq1  TCAGAGGAAAGGCAACCCAGCAGAAAATTCATGAAAAATGGCCAGCCCGG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAAGGCAACCCAGCAGAAAATTCATGAAAAATGGCCAGCCCGG  1043

seq1  ATTTTTTTTTTTTTTTAATGTGAAGAGCTGAAGAAAGCGAGGCCTGAGGA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTTTTTTTAATGTGAAGAGCTGAAGAAAGCGAGGCCTGAGGA  1093

seq1  GTTGGCATAAAGAGAAAGGAACGTTTGCTGTTATATATGGCAGAAGGGCA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATAAAGAGAAAGGAACGTTTGCTGTTATATATGGCAGAAGGGCA  1143

seq1  GAAGCTGCTGTCCCAGCAGAGGTGATGAATTC  1166
      ||||||||||||||||||||||||||||||||
seq2  GAAGCTGCTGTCCCAGCAGAGGTGATGAATTC  1175