BAC Information

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BAC

Clone NameB6Ng01-220K24
Chromosome19 (Build37)
Map Location 36,452,759 - 36,453,668
singlet/doubletsinglet
Overlap genePcgf5
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195
Downstream geneLOC668201, Hectd2, LOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K24.bB6Ng01-220K24.g
ACCGA036183GA036184
length1,213923
definitionB6Ng01-220K24.b B6Ng01-220K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccctggggtctgggttagttgagactgttgctcttcctatggggt
tactctctctttcagcttcttttatccttcccttaattcaaccatttggg
gtccctgacttcagttcaaaggttgggtgtaagtatttgcatctgtctca
gtcagctgctggtagggcctctcaggggacagccatgccaggctcccatc
tataagcacactataggatcagaaatagtgtcaggccttggtgccccacc
catgagatggatccgaagttggaccggtcattagaccaccgcctttcctt
cagtctcttctccatttttgtccctgcagttcttttagacaggaacagtt
ctgagtcagaaattttgactgtgggttagtaaccctgtccctctgcttga
ggccctgtctatctactggaggcggactctgagttctctctccctactgt
tgggcatattggctaagaccacccccattgagtctttagagtctctcact
tcccaggtctctggtactttttatagggtcctcccacccaactccaccct
gaggctgcttatcttcattcattttcttggccctctgtgcttctctcctg
tcccccaccatacttaatcctgttccccctcccacctctgcctcccatga
ttagttcctttcccccatctaagtggaattgaaacatcctcatttgggcc
tttctgcttgttatacctcttacggtctgtgggtagtatcctaggtattc
agtactttttgactaatatccacttatcagtgagtacataccatgcatgt
ccttgtgagtttgagttacctcactcaggatgatattttctagttccatc
catttgcctgcaaaattcatgatgtcttcattttttaatagccgaatagt
attccactatgtaaatgaaccacattttccgcatccattttttatgttga
aggacatctggattgtttccagcttctgacttattacaaacagattgcta
tgaacattagtgggagcatgtattctattatatgttggagcatcttctgg
ggtattatgccagatggtatagctgggtcttttaggtagaactatttccc
aattttcttgaggaacttcgactggattccagagtggtggtaaccagcct
ggcaatccaccagcatgggaggaagtgattcctctgttgtcttcacaatt
ccttgtgctcgag
gaattcattgggcagtaggcaaatgaagccttggtttctgctctgagaat
gggattgatgtaaccgaactcagttccctggagtgtttactccacattgc
aacgcatacacagatatctaaccagagcttccacgtagtaagcattagct
cgtgatgattgacaggagggagaggaatgggagggtcaggtgagagaatg
gccagagcatggtcatgggtagacgtggcaggcaagaagcaaaaggagaa
agactaaggcgaagcggtgggaaggcatcacagctgaggagggctgccgg
cttagaccagaatctcatcgcaaaacacaaggggaagcccagcatgtaaa
atacatcagcggagccgcttatttgaaagtgaagtcagggaccaaggtcc
tctctttttgttcctcctcctctaactacccacagccccccccccaaggg
aattctaagaaaccccgatgctgcaagaacaaaaccagtttctgtagagg
atttgtaagaagacactttaatagcttctcggttctgaattgactgaatt
ttccagaaagaaaaaaaaaatccttctctttttcaagtgtcatcttggat
gaaactttgctcaagtgtgtgactttttttttgccttcttatcaaggctg
agtgaaaaccttctggtctgttcatggtgactttgggttagtttctggct
cgggtgctttgaggtggcactctccagcctctgaggttctgaagagtaga
cttcccagggctgcctggtgctctcgggatttcggtgagcagctcgctta
gagttcggggcttctggacatggggaccaagaatgctccagactattgtc
ccatccatcgtggcatctcacttagtacctgtgacctggaacaaaaaaaa
cgtggagttcagtttttttctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_36452759_36453668
seq2: B6Ng01-220K24.g_64_985

seq1  GAATTCATTGGGCAGTAGGCAAATGAAGCCTTGGTTTCTGCTCTGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGGCAGTAGGCAAATGAAGCCTTGGTTTCTGCTCTGAGAAT  50

seq1  GGGATTGATGTAACCGAACTCAGTTCCCTGGAGTGTTTACTCCACATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGATGTAACCGAACTCAGTTCCCTGGAGTGTTTACTCCACATTGC  100

seq1  AACGCATACACAGATATCTAACCAGAGCTTCCACGTAGTAAGCATTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCATACACAGATATCTAACCAGAGCTTCCACGTAGTAAGCATTAGCT  150

seq1  CGTGATGATTGACAGGAGGGAGAGGAATGGGAGGGTCAGGTGAGAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATGATTGACAGGAGGGAGAGGAATGGGAGGGTCAGGTGAGAGAATG  200

seq1  GCCAGAGCATGGTCATGGGTAGACGTGGCAGGCAAGAAGCAAAAGGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCATGGTCATGGGTAGACGTGGCAGGCAAGAAGCAAAAGGAGAA  250

seq1  AGACTAAGGCGAAGCGGTGGGAAGGCATCACAGCTGAGGAGGGCTGCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAGGCGAAGCGGTGGGAAGGCATCACAGCTGAGGAGGGCTGCCGG  300

seq1  CTTAGACCAGAATCTCATCGCAAAACACAAGGGGAAGCCCAGCATGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCAGAATCTCATCGCAAAACACAAGGGGAAGCCCAGCATGTAAA  350

seq1  ATACATCAGCGGAGCCGCTTATTTGAAAGTGAAGTCAGGGACCAAGGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCAGCGGAGCCGCTTATTTGAAAGTGAAGTCAGGGACCAAGGTCC  400

seq1  TCTCTTTTTGTTCCTCCTCCTCTAACTACCCACAGCCCCCCCCCCAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTGTTCCTCCTCCTCTAACTACCCACAGCCCCCCCCCCAAGGG  450

seq1  AATTCTAAGAAACCCCGATGCTGCAAGAACAAAACCAGTTTCTGTAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAAGAAACCCCGATGCTGCAAGAACAAAACCAGTTTCTGTAGAGG  500

seq1  ATTTGTAAGAAGACACTTTAATAGCTTCTCGGTTCTGAATTGACTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAGAAGACACTTTAATAGCTTCTCGGTTCTGAATTGACTGAATT  550

seq1  TTCCAGAAAGAAAAAAAAAATCCTTCTCTTTTTCAAGTGTCATCTTGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAGAAAAAAAAAATCCTTCTCTTTTTCAAGTGTCATCTTGGAT  600

seq1  GAAACTTTGCTCAAGTGTGTGACTTTTTTTTTGCCTTCTTATCAAGGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTTGCTCAAGTGTGTGACTTTTTTTTTGCCTTCTTATCAAGGCTG  650

seq1  AGTGAAAACCTTCTGGTCTGTTCATGGTGACTTTGGGTTAG-TTCTGGCT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGTGAAAACCTTCTGGTCTGTTCATGGTGACTTTGGGTTAGTTTCTGGCT  700

seq1  C-GGTGCTTTGAGGTGGCACTCTCCAGCCTCTGAGGTTCTGAAGAGTAGA  748
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGCTTTGAGGTGGCACTCTCCAGCCTCTGAGGTTCTGAAGAGTAGA  750

seq1  CTTCCCA-GGCTGCCTGGTGCTCTCCGGATTTCGGTGAGCAGC-CGCTTA  796
      ||||||| ||||||||||||||||| ||||||||||||||||| ||||||
seq2  CTTCCCAGGGCTGCCTGGTGCTCTCGGGATTTCGGTGAGCAGCTCGCTTA  800

seq1  GAG-TCGGGGCTTCTGGACATGGGGACC-AGGATGCCCCAGACTA-TGTC  843
      ||| |||||||||||||||||||||||| || |||| |||||||| ||||
seq2  GAGTTCGGGGCTTCTGGACATGGGGACCAAGAATGCTCCAGACTATTGTC  850

seq1  CCATCCCATCGT-GCATCTCAC-TAGTA-CTGTGACCTTGAAC-AAAAAA  889
      |||| ||||||| ||||||||| ||||| ||||||||| |||| ||||||
seq2  CCAT-CCATCGTGGCATCTCACTTAGTACCTGTGACCTGGAACAAAAAAA  899

seq1  ACGT-GAGTTCAG-TTTCTTCTG  910
      |||| |||||||| ||| |||||
seq2  ACGTGGAGTTCAGTTTTTTTCTG  922