BAC Information

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BAC

Clone NameB6Ng01-221E11
Chromosome19 (Build37)
Map Location 10,251,401 - 10,370,493
singlet/doubletdoublet
Overlap geneLOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla
Upstream geneEG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
Downstream geneSyt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221E11.bB6Ng01-221E11.g
ACCGA036613GA036614
length1,185889
definitionB6Ng01-221E11.b B6Ng01-221E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,369,317 - 10,370,493)(10,251,401 - 10,252,317)
sequence
gaattcttctcaagggtactttcagttctggccaggctgccgataaaaag
gtcatcatcaagctgagctcctactatgcatcaaactgagctcctactat
gcattggacttttgcatggagctaggagacataagaggaaagtcaccaga
ttattccccgtccgtggctgacacatgacacttaactccctggtgtcctt
ccagacccagttcaaagtactccaggctcagggtcacgtttaatgcagag
tattggcggcttctgtgttgtggacacttagctcctttgcactcaagact
gtcccatggcacctaggaagagaagtgagtgtttcacagaacctcgcttc
cttggatgtccaggaactctgttagaagccacgtccctgctgccagtcag
tgtggctcccaccttcagggtgctgatcctgcttgctgcgaacctctccc
actggccgactttgtgggcccctgggtagccatcctccttttggataccc
cattgctgagaacaccaatctcctgcactcccaggaagccccaggtctgt
tccccatgtgtaggctgagttgtcatttgtcgctgctgctcagcttccca
gccctgtcctcctcagaccccacacctccctggccttggcaacgcctttc
aggctcacacaggacggttcctctctccccgcatgccccctgccagtgct
gttgagcggtttcagattgttccccttgccgcctgcctgccatactatgc
agtttaataaacaggctaatggaggctctgggcacctcaggagccgcctt
ccctgtttcttggtccctttagagagcctgtccccctctcttccccaggt
gagccccattcagcaggcttctgggagcggtaactaagctgggcgcccag
cccaccacctgcttagtactttataaaagtttaaccttaatggtgtaatg
aactcccgtcataaagcagctggagcagtgcatcctgggatgttataaat
tatagagccctctgaagttgttaattggaaatggcagcactggaaatgtt
gaaagcggccgggcctcattgggctgagcgcagcttatctctacttcctt
tccaaaggcaccacagaactgtggtctggctgccaagataaggaatgttc
ctcggatctaacctgagcttctggttcctccgccc
gaattcttttgagcagcataacaaacccaatattttagagagtgaagcaa
tgggaattttgattcatggagtgtcagccctggaatgtggtgaagttttc
ttggcttagaactgggtgtgctatcactcccacactggaagccgcgtcca
caatagccttgaccctgggatgacctcagcagcaaggggggggggcaagt
ctcatcccctcaccatcagctcctaagactcagctcttctattcacaagt
caaaggtatgatgagctgaaacagtactgagtatggtcgtgcccggcaac
ctaagggttgtaacattcttgtaacaacagaatctcaaatcacatgtgct
gaactttcagccaatcgcagtctgcaaattgcccagcgacatgtgtataa
gacaactactgagatgttactaatcggcttcttcctctacatcacttcct
tttcctgcccataaatatccccagcccctttgcttcatggaaccttcttt
ctgaaccttctctcggctcaggctactctctgattcctaagtcttttctc
agcacaaataaagcctgctaaatttaattagtctaaaggtgttttctttc
cttcttatattaacagctggatgagggcttaattgtgattttaattgact
tccagagggtttcaggtcagttctactcctagtaaggctcctggagttgt
gcttggagctctcaaactatctctgaacaatttttagctgcagagagccc
atgatttgatcagctctaacaattaactagtctggatctagtttaagaga
gctcaggtatttttttaaaaaacagatacttcttttaaatctaggaagtc
tgggaatcttagagtctagttctctctcctctctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_10369317_10370493
seq2: B6Ng01-221E11.b_46_1230 (reverse)

seq1  GGGCGGAGGAACCAGGAGCTCA-GTTTGGTCTGAGG-ACATTC--TTTCT  46
      ||||||||||||||| |||||| ||| | || |||| ||||||  | |||
seq2  GGGCGGAGGAACCAGAAGCTCAGGTTAGATCCGAGGAACATTCCTTATCT  50

seq1  TCGCAGCCAGA-CACAGTTCTGT-GTGCCTTTTGAAAGGAAGTAGAGAAT  94
      | ||||||||| ||||||||||| |||||||| |||||||||||||||  
seq2  TGGCAGCCAGACCACAGTTCTGTGGTGCCTTTGGAAAGGAAGTAGAGATA  100

seq1  AGCTGCGCTCAGCCCAATGAGG-CCGGCCGCTTTCAACA-TTCCAGTTGC  142
      |||||||||||||||||||||| |||||||||||||||| |||||| |||
seq2  AGCTGCGCTCAGCCCAATGAGGCCCGGCCGCTTTCAACATTTCCAG-TGC  149

seq1  TGCCATTTCCAATT-ACAACTTCAGAGGGCTCCTATAATTTAT-ACATCC  190
      |||||||||||||| |||||||||||||||| ||||||||||| ||||||
seq2  TGCCATTTCCAATTAACAACTTCAGAGGGCT-CTATAATTTATAACATCC  198

seq1  CAGGATGCACTGCTCCAGCTGCTTTATGACGGGAGTTCATTACACCATTA  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGCACTGCTCCAGCTGCTTTATGACGGGAGTTCATTACACCATTA  248

seq1  AGGTTAAACTTTTATAAAGTACTAAGCAGGTGGTGGGCTGGGCGCCCAGC  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAACTTTTATAAAGTACTAAGCAGGTGGTGGGCTGGGCGCCCAGC  298

seq1  TTAGTTACCGCTCCCAGAAGCCTGCTGAATGGGGCTCACCTGGGGAAGAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTACCGCTCCCAGAAGCCTGCTGAATGGGGCTCACCTGGGGAAGAG  348

seq1  AGGGGGACAGGCTCTCTAAAGGGACCAAGAAACAGGGAAGGCGGCTCCTG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGACAGGCTCTCTAAAGGGACCAAGAAACAGGGAAGGCGGCTCCTG  398

seq1  AGGTGCCCAGAGCCTCCATTAGCCTGTTTATTAAACTGCATAGTATGGCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCCAGAGCCTCCATTAGCCTGTTTATTAAACTGCATAGTATGGCA  448

seq1  GGCAGGCGGCAAGGGGAACAATCTGAAACCGCTCAACAGCACTGGCAGGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCGGCAAGGGGAACAATCTGAAACCGCTCAACAGCACTGGCAGGG  498

seq1  GGCATGCGGGGAGAGAGGAACCGTCCTGTGTGAGCCTGAAAGGCGTTGCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGCGGGGAGAGAGGAACCGTCCTGTGTGAGCCTGAAAGGCGTTGCC  548

seq1  AAGGCCAGGGAGGTGTGGGGTCTGAGGAGGACAGGGCTGGGAAGCTGAGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGGGAGGTGTGGGGTCTGAGGAGGACAGGGCTGGGAAGCTGAGC  598

seq1  AGCAGCGACAAATGACAACTCAGCCTACACATGGGGAACAGACCTGGGGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCGACAAATGACAACTCAGCCTACACATGGGGAACAGACCTGGGGC  648

seq1  TTCCTGGGAGTGCAGGAGATTGGTGTTCTCAGCAATGGGGTATCCAAAAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGAGTGCAGGAGATTGGTGTTCTCAGCAATGGGGTATCCAAAAG  698

seq1  GAGGATGGCTACCCAGGGGCCCACAAAGTCGGCCAGTGGGAGAGGTTCGC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGGCTACCCAGGGGCCCACAAAGTCGGCCAGTGGGAGAGGTTCGC  748

seq1  AGCAAGCAGGATCAGCACCCTGAAGGTGGGAGCCACACTGACTGGCAGCA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCAGGATCAGCACCCTGAAGGTGGGAGCCACACTGACTGGCAGCA  798

seq1  GGGACGTGGCTTCTAACAGAGTTCCTGGACATCCAAGGAAGCGAGGTTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACGTGGCTTCTAACAGAGTTCCTGGACATCCAAGGAAGCGAGGTTCT  848

seq1  GTGAAACACTCACTTCTCTTCCTAGGTGCCATGGGACAGTCTTGAGTGCA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACACTCACTTCTCTTCCTAGGTGCCATGGGACAGTCTTGAGTGCA  898

seq1  AAGGAGCTAAGTGTCCACAACACAGAAGCCGCCAATACTCTGCATTAAAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCTAAGTGTCCACAACACAGAAGCCGCCAATACTCTGCATTAAAC  948

seq1  GTGACCCTGAGCCTGGAGTACTTTGAACTGGGTCTGGAAGGACACCAGGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTGAGCCTGGAGTACTTTGAACTGGGTCTGGAAGGACACCAGGG  998

seq1  AGTTAAGTGTCATGTGTCAGCCACGGACGGGGAATAATCTGGTGACTTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTGTCATGTGTCAGCCACGGACGGGGAATAATCTGGTGACTTTC  1048

seq1  CTCTTATGTCTCCTAGCTCCATGCAAAAGTCCAATGCATAGTAGGAGCTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATGTCTCCTAGCTCCATGCAAAAGTCCAATGCATAGTAGGAGCTC  1098

seq1  AGTTTGATGCATAGTAGGAGCTCAGCTTGATGATGACCTTTTTATCGGCA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGATGCATAGTAGGAGCTCAGCTTGATGATGACCTTTTTATCGGCA  1148

seq1  GCCTGGCCAGAACTGAAAGTACCCTTGAGAAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCCAGAACTGAAAGTACCCTTGAGAAGAATTC  1185

seq1: chr19_10251401_10252317
seq2: B6Ng01-221E11.g_68_956

seq1  GAATTCTTTTGAGCAGCATAACAAACCCAATATTTTAGAGAGTGAAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAGCAGCATAACAAACCCAATATTTTAGAGAGTGAAGCAA  50

seq1  TGGGAATTTTGATTCATGGAGTGTCAGCCCTGGAATGTGGTGAAGTTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTTGATTCATGGAGTGTCAGCCCTGGAATGTGGTGAAGTTTTC  100

seq1  TTGGCTTAGAACTGGGTGTGCTATCACTCCCACACTGGAAGCCGCGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTAGAACTGGGTGTGCTATCACTCCCACACTGGAAGCCGCGTCCA  150

seq1  CAATAGCCTTGACCCTGGGATGACCTCAGCAGCAAGGGGGGGGGGCAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCTTGACCCTGGGATGACCTCAGCAGCAAGGGGGGGGGGCAAGT  200

seq1  CTCATCCCCTCACCATCAGCTCCTAAGACTCAGCTCTTCTATTCACAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCCCTCACCATCAGCTCCTAAGACTCAGCTCTTCTATTCACAAGT  250

seq1  CAAAGGTATGATGAGCTGAAACAGTACTGAGTATGGTCGTGCCCGGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTATGATGAGCTGAAACAGTACTGAGTATGGTCGTGCCCGGCAAC  300

seq1  CTAAGGGTTGTAACATTCTTGTAACAACAGAATCTCAAATCACATGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGTTGTAACATTCTTGTAACAACAGAATCTCAAATCACATGTGCT  350

seq1  GAACTTTCAGCCAATCGCAGTCTGCAAATTGCCCAGCGACATGTGTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCAGCCAATCGCAGTCTGCAAATTGCCCAGCGACATGTGTATAA  400

seq1  GACAACTACTGAGATGTTACTAATCGGCTTCTTCCTCTACATCACTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTACTGAGATGTTACTAATCGGCTTCTTCCTCTACATCACTTCCT  450

seq1  TTTCCTGCCCATAAATATCCCCAGCCCCTTTGCTTCATGGAACCTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGCCCATAAATATCCCCAGCCCCTTTGCTTCATGGAACCTTCTTT  500

seq1  CTGAACCTTCTCTCGGCTCAGGCTACTCTCTGATTCCTAAGTCTTTTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTTCTCTCGGCTCAGGCTACTCTCTGATTCCTAAGTCTTTTCTC  550

seq1  AGCACAAATAAAGCCTGCTAAATTTAATTAGTCTAAAGGTGTTTTCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAATAAAGCCTGCTAAATTTAATTAGTCTAAAGGTGTTTTCTTTC  600

seq1  CTTCTTATATTAACAGCTGGATGAGGGCTTAATTGTGATTTTAATTGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTATATTAACAGCTGGATGAGGGCTTAATTGTGATTTTAATTGACT  650

seq1  TCCAGAGGGTTTCAGGTCAGTTCTACTCCTAGTAAGGCTCCTGGAGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGGGTTTCAGGTCAGTTCTACTCCTAGTAAGGCTCCTGGAGTTGT  700

seq1  GCTTGGAGCTCTCAAACTATCTCTGAACAA-TTTTAGCTGCAGAGAGCCC  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCTTGGAGCTCTCAAACTATCTCTGAACAATTTTTAGCTGCAGAGAGCCC  750

seq1  ATGATTTGATCAGCTCTAACAATTAACTAGTCTGGATCTAG-TTAAGAGA  798
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATGATTTGATCAGCTCTAACAATTAACTAGTCTGGATCTAGTTTAAGAGA  800

seq1  GCTCAGGTA-TTTTTTAAAAAACAGATACT--CTTTAAATCTAGGAAGTC  845
      ||||||||| ||||||||||||||||||||   |||||||||||||||||
seq2  GCTCAGGTATTTTTTTAAAAAACAGATACTTCTTTTAAATCTAGGAAGTC  850

seq1  TGGGAATCTAAGAGTCTAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  895
      ||||||||| |||||||||||||||||| ||||||||||           
seq2  TGGGAATCTTAGAGTCTAGTTCTCTCTC-CTCTCTCTCTT----------  889

seq1  TCTCTCTCTCTCTCTCTCTCTT  917
                            
seq2  ----------------------  889