BAC Information

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BAC

Clone NameB6Ng01-221M04
Chromosome14 (Build37)19 (Build37)
Map Location 120,308,013 - 120,309,19033,718,658 - 33,719,140
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDzip1, Dnajc3a, LOC100043828, Ugcgl2, Hs6st3, LOC619601, EG621324, LOC100043830
Downstream geneOxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a, LOC668835, LOC668837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M04.bB6Ng01-221M04.g
ACCGA036963GA036964
length1,185913
definitionB6Ng01-221M04.b B6Ng01-221M04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(120,308,013 - 120,309,190)(33,718,658 - 33,719,140)
sequence
tcactcaggtgtcgatcactgggacaagcaaggtgccggtgagtgtctgc
gtgatcaatatgcagtctaaaacaatcctaaaatcaacataaagttagtc
actgagcgtcaccatcggcttgtcattttaaaccttaccagtgttcagat
tttctttctctgcaggatggactgctttcttcctcaccccatgtctgtta
gcaaactgcttacttgggtgtgtaaacacatttggcacacttccaaactg
ctcattaggaaacgttattaaatgtagatgcagagtatttaggtcaaagg
agaagttagacaccatttagcggcatcttttccataattcatttcttgac
tagtctagattattcttgcaaacatgcccacctctgagacacttaggtca
gagaaggagtagctaatgaccttttcaaggtcataccaatgctaagtttg
aactgaggtcaggatatcagcaaatgatttttgtaccaaagggttttaca
aatggtggaccttgtgagacacagaagaagcacaccactggaacgctttc
aagcctgtggcaaacaaacaactttccttttgtctgtgtggttctccttg
tggagaacttactctgggtttgtttgtccccactgggctcctggctggtt
tggagctttgcagtagcatcttctatcctcccgcacttagcacagagacc
ttcaagcaccaggattacattttgaggtctatacttcaaagctgatccta
ccttggtctctcgaggtgcccaggcagcagcaatcccccaacaccatctc
aaataacttttccttaaactgaagtcattcagtcatgacttatgatttgt
atttttgctttttgtatctgcagctctacttataaacctcttctaatcac
gcaggctgccggattagagtctaatgagagctgggagtcacgatatggtt
gctccaaacccttggcatttcagctcacatgaggagggctgagttaattg
cttaagaaggaccatgggttgcttctcccaaccccaacatttggcctcct
gattcactcacgaaaccattgtcttccaaaggcctccaacacaatctaca
ccttgaagcactccacttttggttggagtatgcctttgtaacttggagta
agtgtaggtatctataccaagtctagcacagccac

gaattcctcttggaggattttacctttgatgagtatgaagtgtccctctt
tgtcttttttgataattttgggttggaagtcgagtttattcgatattaga
atggctactccaccttgtttcttgagaccatttgcttggaaaattgtttt
ccagcctttcactctgaggtagtgtctgtcttttttcctgagatgggttt
cctgtaagcagcaaaatgttgggtcttgtttgtgtagccagtctgttagt
ctatgtctttttattggggaattgagtccattcatattaagagattttaa
ggaaaagtaattgttgcttcctattatttttgttgttaaagttggcattc
tgttcttgtggctgtcttctttttggtttgttgaaggattactttcttgc
tttttctagggcgtggtttctgtccttgtattggtttttttttctgttaa
tatccattgaagggctggattcgtggaaagataatgtgtgaatttggttt
tgtcctggaatactttgttttctccatctatggtgattgagagtttgact
gggtatagtagcctcagctggaatttgtgttgtcttagtgtctgtataac
atctgtccaggatctttggcttttcatagtctctggtgaaaattggtgta
attctgataggcctgcctttatatgttacttgactttttcccttactgct
tttactattcttctatctttatttagtgcatttgttgttctgattattat
gtgtcgggaggaatttcttttctggtccagtctatttggagttctgaagg
ctttcttgtatgttcatgggaatctctttcttttaggtttgggaaagttt
cttctataattttgttgaagatatttgctcgtgccctttgaagtgaaaat
cttcaatctcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_120308013_120309190
seq2: B6Ng01-221M04.b_53_1237 (reverse)

seq1  GTGGC--TGCT-GGCTTGTGTAT-GATACCTACCACCTACTTC-AGTTAC  45
      |||||  |||| | |||| |||| |||||||| ||| |||| | ||||||
seq2  GTGGCTGTGCTAGACTTG-GTATAGATACCTA-CACTTACTCCAAGTTAC  48

seq1  AAA-GCATACTCCA--CCAAAGTGGAGTGC-TCAAGGTGTAGAATGTGGT  91
      ||| ||||||||||  | |||||||||||| |||||||||||| ||| ||
seq2  AAAGGCATACTCCAACCAAAAGTGGAGTGCTTCAAGGTGTAGATTGT-GT  97

seq1  TGGGGGCTTTTGG-AGACAGTGG-TTCGTGAGTTGGAATCAGGAGG-CAA  138
      ||| ||| ||||| ||||| ||| |||||||||  ||||||||||| |||
seq2  TGGAGGCCTTTGGAAGACAATGGTTTCGTGAGT--GAATCAGGAGGCCAA  145

seq1  ATGTGGGGGTTGGGAGAAAGCAACCCATGGTCCTTCTTAAGCAATTAACT  188
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGTTGGGGTTGGGAG-AAGCAACCCATGGTCCTTCTTAAGCAATTAACT  194

seq1  CAGCCCTCCTCATGTGAGCTG-AATGCCAA-GGTTTGGAGCAACCATATC  236
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CAGCCCTCCTCATGTGAGCTGAAATGCCAAGGGTTTGGAGCAACCATATC  244

seq1  GTGACTCCCAGCTCTCATTAGACTCTAATCCGGCAGCCTGCGTGATTAAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGACTCCCAGCTCTCATTAGACTCTAATCCGGCAGCCTGCGTGATT-AG  293

seq1  AAGAGGTTTATAAGTAGAGCTGCAGATACAAAAAGCAAAAATACAAATCA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTTATAAGTAGAGCTGCAGATACAAAAAGCAAAAATACAAATCA  343

seq1  TAAGTCATGACTGAATGACTTCAGTTTAAGGAAAAGTTATTTGAGATGGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATGACTGAATGACTTCAGTTTAAGGAAAAGTTATTTGAGATGGT  393

seq1  GTTGGGGGATTGCTGCTGCCTGGGCACCTCGAGAGACCAAGGTAGGATCA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGATTGCTGCTGCCTGGGCACCTCGAGAGACCAAGGTAGGATCA  443

seq1  GCTTTGAAGTATAGACCTCAAAATGTAATCCTGGTGCTTGAAGGTCTCTG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAGTATAGACCTCAAAATGTAATCCTGGTGCTTGAAGGTCTCTG  493

seq1  TGCTAAGTGCGGGAGGATAGAAGATGCTACTGCAAAGCTCCAAACCAGCC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTGCGGGAGGATAGAAGATGCTACTGCAAAGCTCCAAACCAGCC  543

seq1  AGGAGCCCAGTGGGGACAAACAAACCCAGAGTAAGTTCTCCACAAGGAGA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCCAGTGGGGACAAACAAACCCAGAGTAAGTTCTCCACAAGGAGA  593

seq1  ACCACACAGACAAAAGGAAAGTTGTTTGTTTGCCACAGGCTTGAAAGCGT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACACAGACAAAAGGAAAGTTGTTTGTTTGCCACAGGCTTGAAAGCGT  643

seq1  TCCAGTGGTGTGCTTCTTCTGTGTCTCACAAGGTCCACCATTTGTAAAAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGTGTGCTTCTTCTGTGTCTCACAAGGTCCACCATTTGTAAAAC  693

seq1  CCTTTGGTACAAAAATCATTTGCTGATATCCTGACCTCAGTTCAAACTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGTACAAAAATCATTTGCTGATATCCTGACCTCAGTTCAAACTTA  743

seq1  GCATTGGTATGACCTTGAAAAGGTCATTAGCTACTCCTTCTCTGACCTAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTATGACCTTGAAAAGGTCATTAGCTACTCCTTCTCTGACCTAA  793

seq1  GTGTCTCAGAGGTGGGCATGTTTGCAAGAATAATCTAGACTAGTCAAGAA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCAGAGGTGGGCATGTTTGCAAGAATAATCTAGACTAGTCAAGAA  843

seq1  ATGAATTATGGAAAAGATGCCGCTAAATGGTGTCTAACTTCTCCTTTGAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTATGGAAAAGATGCCGCTAAATGGTGTCTAACTTCTCCTTTGAC  893

seq1  CTAAATACTCTGCATCTACATTTAATAACGTTTCCTAATGAGCAGTTTGG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATACTCTGCATCTACATTTAATAACGTTTCCTAATGAGCAGTTTGG  943

seq1  AAGTGTGCCAAATGTGTTTACACACCCAAGTAAGCAGTTTGCTAACAGAC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCCAAATGTGTTTACACACCCAAGTAAGCAGTTTGCTAACAGAC  993

seq1  ATGGGGTGAGGAAGAAAGCAGTCCATCCTGCAGAGAAAGAAAATCTGAAC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTGAGGAAGAAAGCAGTCCATCCTGCAGAGAAAGAAAATCTGAAC  1043

seq1  ACTGGTAAGGTTTAAAATGACAAGCCGATGGTGACGCTCAGTGACTAACT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTAAGGTTTAAAATGACAAGCCGATGGTGACGCTCAGTGACTAACT  1093

seq1  TTATGTTGATTTTAGGATTGTTTTAGACTGCATATTGATCACGCAGACAC  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTGATTTTAGGATTGTTTTAGACTGCATATTGATCACGCAGACAC  1143

seq1  TCACCGGCACCTTGCTTGTCCCAGTGATCGACACCTGAGTGA  1178
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCGGCACCTTGCTTGTCCCAGTGATCGACACCTGAGTGA  1185


seq1: chr19_33718658_33719140
seq2: B6Ng01-221M04.g_490_978 (reverse)

seq1  GATGAGAATGAAGATTTTCAACTCAAAGG--ACCAGCAAATATCTTCAAC  48
      ||||||| ||||||||||||  |||||||  || ||||||||||||||||
seq2  GATGAGATTGAAGATTTTCACTTCAAAGGGCACGAGCAAATATCTTCAAC  50

seq1  AAAATTATTGAAGAAAACTTCCCAAATAT-AAAGAAAGAGATACCTATGA  97
      |||||||| |||||||  ||||||||  | |||||||||||| || ||||
seq2  AAAATTATAGAAGAAACTTTCCCAAACCTAAAAGAAAGAGATTCCCATGA  100

seq1  ACATACAAG-AAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAA  146
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  ACATACAAGAAAGCCTTCAGAACTCCAAATAGACTGGACCAGAAAAGAAA  150

seq1  TTCCTCCCGACATATAATAATCAGAACAACAAATGCACTAAATAAAGAT-  195
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TTCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATA  200

seq1  --AGAATACGAAAAGCAGTAAGGGAAAAAGGTCAAGTAACATACAAAGGC  243
        ||||||  ||||||||||||||||||| ||||||||||||| ||||||
seq2  GAAGAATAGTAAAAGCAGTAAGGGAAAAA-GTCAAGTAACATATAAAGGC  249

seq1  AAGCCTATCAGAATTACACCAGATTTTTCACCAGAGACTATG-AAAGCCA  292
      | ||||||||||||||||||  | |||||||||||||||||| |||||||
seq2  AGGCCTATCAGAATTACACC--AATTTTCACCAGAGACTATGAAAAGCCA  297

seq1  GAAGAGCCTGGACAGATGTTATACAGACACTAAGAGAACACAAATTCCAG  342
       |||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  -AAGATCCTGGACAGATGTTATACAGACACTAAGACAACACAAATTCCAG  346

seq1  CCCAGGCTACTATACCCAGCCAAACTCTCAATTACCATAGATGGAGAAAC  392
      |  |||||||||||||||| |||||||||||| |||||||||||||||| 
seq2  CTGAGGCTACTATACCCAGTCAAACTCTCAATCACCATAGATGGAGAAAA  396

seq1  CAAAGTATTCCATGACAAAACCAAATTCACACATTATCTCTCCACGAATC  442
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  CAAAGTATTCCAGGACAAAACCAAATTCACACATTATCTTTCCACGAATC  446

seq1  CAGCCCTTCAAAGGATAATAACAG--AAAAAAACCAATACAAG  483
      ||||||||||| ||||| ||||||  |||||||||||||||||
seq2  CAGCCCTTCAATGGATATTAACAGAAAAAAAAACCAATACAAG  489


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