BAC Information

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BAC

Clone NameB6Ng01-221M16
Chromosome19 (Build37)
Map Location 21,000,628 - 21,001,778
singlet/doubletsinglet
Overlap geneTmc1
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, LOC100042287
Downstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M16.bB6Ng01-221M16.g
ACCGA036984GA036985
length1,169971
definitionB6Ng01-221M16.b B6Ng01-221M16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcacctccttttctccttttcctaagactcggttcctttctc
agactcagagatgtagttaaagcctcactgacttcctgaaaatggcttgg
cctccatttaactcaatagccaaagatggcacactcggtgtactggctgg
ttttatgtatcaacttgacacagctggagttatcacagagaaaggagctt
ccgttgaggaaatgcctccatgagatccagctgtggggtattttctcaat
tagtgatcaagggggaaaggccccttgtgggtgggaccatctctgggctg
gttgtcttggttctataagagagcaggctgagcaagccaggggaggcaag
ccagtaatgaacatccctccatggcctctgcatcagctcctgctttctga
cctgcttgagttccagtcctgacttcttcggtgatgaacagcagtatgga
agtgtaagccgaataaaccctttcctccccaacttgcttcttggtcatga
tgtttgtgcaggaatagaaaccctgactaaggcattcggagttccaaatt
cttgcatattataacaacgtctgccaccaaacaagcaaataatcccaaac
actcttgtctcttaatattttacaactttctactcttaaatgttttatct
ttatgacttctctgtgctctgctctcaaggaatcttaaagactattgtgt
aaacagtctatctcaggttgtataaattcactgggtgtgcctaaagaatt
ttgtaaacaaaatttagtttaaaacatataagaaaaggcctataaattaa
agtctacacatgggtatatatgtaactcagctcttgtctagaatatactg
tatatgaaactgggattcaattcttatttttaaaaatagatctactaagg
aaaacaaatgattgagatagcaacccatgtggcttcccctccatcttggg
ctgatgacctttcaaatttgtaagctgcacatcactggcacccaatcttt
actaaaggttaaaaagggacttgccatgtgacttcacaatctagatgacc
acatggtaataaagcacaattattaacacatctcagttctgcctggcccc
ttaggttattccattataactttttttgtaaacttaaaagaaagcaacca
ctcctccaaaatttttaga
gaattccttctttatgtcctctaccatcatcatgagatatgcttttaaat
ccaggtctaccttttcaggtgtgttagggtgtcctggattgggtgaagtg
ggcgttctgggttctgatgatggtgagtggtcctggcttctgttagtagg
attcttacgtttacctttcgccatctggcaatctctggagttagttgtta
tagttgtctttgttaagagattgttcctctgttgattttgttaccctcta
tcagcaggcgtgggagacaagctctcttctctgagtttcagtggtcagag
cagtctctgtaggcaagctctcctctttcagggaaggtgtacagttatct
ggtgtttggacctcctcctggctgaaggtgaaggcccaaaacaggatctt
tcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagt
cgaagatgtcgccgcctgagaagctctgtggctcttgtccggaaggaggc
cggccgtctggagctgaggatggcgctgcctcagaagctctgtggctctt
gccgggaaggtggctggttgtctggagctgaagatggcgccgcccagaag
ctctgcgactcttgcccgtcccagaaacggctggcactctgtattccaca
cggtcacccgtgcagcctgccctccgcggagtcccggagccaagaaggct
cccgccggcgcctgtgccacaaacctctcaggccgggcagacccccgtgc
tctcaccaggaaaggtggccggctgtctcaactcttctttttaaaaggaa
ttaattagttaattaatgaatttgtatatgttgggagcatttccagatgt
gttatgtatgtgcagcgcatgttgtgccttggaacccatggaagttgaga
agtgtcgggtcccccggggattggaggcagggatggctgaatccacccaa
ccctggtgggatgcgtggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21000628_21001778
seq2: B6Ng01-221M16.b_48_1216

seq1  GAATTCATTCACCTCCTTTTCTCCTTTTCCTAAGACTCGGTTCCTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCACCTCCTTTTCTCCTTTTCCTAAGACTCGGTTCCTTTCTC  50

seq1  AGACTCAGAGATGTAGTTAAAGCCTCACTGACTTCCTGAAAATGGCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGAGATGTAGTTAAAGCCTCACTGACTTCCTGAAAATGGCTTGG  100

seq1  CCTCCATTTAACTCAATAGCCAAAGATGGCACACTCGGTGTACTGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTTAACTCAATAGCCAAAGATGGCACACTCGGTGTACTGGCTGG  150

seq1  TTTTATGTATCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTATCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTT  200

seq1  CCGTTGAGGAAATGCCTCCATGAGATCCAGCTGTGGGGTATTTTCTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGAGGAAATGCCTCCATGAGATCCAGCTGTGGGGTATTTTCTCAAT  250

seq1  TAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGACCATCTCTGGGCTG  300

seq1  GTTGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAGGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAGGCAAG  350

seq1  CCAGTAATGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGA  400

seq1  CCTGCTTGAGTTCCAGTCCTGACTTCTTCGGTGATGAACAGCAGTATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGAGTTCCAGTCCTGACTTCTTCGGTGATGAACAGCAGTATGGA  450

seq1  AGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAGCCGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGA  500

seq1  TGTTTGTGCAGGAATAGAAACCCTGACTAAGGCATTCGGAGTTCCAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGCAGGAATAGAAACCCTGACTAAGGCATTCGGAGTTCCAAATT  550

seq1  CTTGCATATTATAACAACGTCTGCCACCAAACAAGCAAATAATCCCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATATTATAACAACGTCTGCCACCAAACAAGCAAATAATCCCAAAC  600

seq1  ACTCTTGTCTCTTAATATTTTACAACTTTCTACTCTTAAATGTTTTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGTCTCTTAATATTTTACAACTTTCTACTCTTAAATGTTTTATCT  650

seq1  TTATGACTTCTCTGTGCTCTGCTCTCAAGGAATCTTAAAGACTATTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGACTTCTCTGTGCTCTGCTCTCAAGGAATCTTAAAGACTATTGTGT  700

seq1  AAACAGTCTATCTCAGGTTGTATAAATTCACTGGGTGTGCCTAAAGAA-T  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAACAGTCTATCTCAGGTTGTATAAATTCACTGGGTGTGCCTAAAGAATT  750

seq1  TTGTAAACAAAATTTAGTTTAAAACATATAAGAAAAGGCCTATAAATTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACAAAATTTAGTTTAAAACATATAAGAAAAGGCCTATAAATTAA  800

seq1  AGTCTACACATGGGTATATATGTAACTCAGCTCTTGTCTAGAATATACTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTACACATGGGTATATATGTAACTCAGCTCTTGTCTAGAATATACTG  850

seq1  TATATGAAACTTGGATTCAATTCTTA-TTTTAAAAATAGATCTACT-AGG  897
      ||||||||||| |||||||||||||| ||||||||||||||||||| |||
seq2  TATATGAAACTGGGATTCAATTCTTATTTTTAAAAATAGATCTACTAAGG  900

seq1  AAAACAAATGATTGAGATAGCAA-CCATGTGGC-TCCCCTCCATCTT-GG  944
      ||||||||||||||||||||||| ||||||||| ||||||||||||| ||
seq2  AAAACAAATGATTGAGATAGCAACCCATGTGGCTTCCCCTCCATCTTGGG  950

seq1  CTGATGACC-TTCAAA-TTGTAAGCTGCACATCACTGGCACCC-ATCTTT  991
      ||||||||| |||||| |||||||||||||||||||||||||| ||||||
seq2  CTGATGACCTTTCAAATTTGTAAGCTGCACATCACTGGCACCCAATCTTT  1000

seq1  ACT-AAGGTT-AAAAGGGACTTGCCATGTGACTTCACAATCTTAAGATGA  1039
      ||| |||||| |||||||||||||||||||||||||||||||  ||||||
seq2  ACTAAAGGTTAAAAAGGGACTTGCCATGTGACTTCACAATCT--AGATGA  1048

seq1  CCACATGGT-ATAAAGCAACAATTA-TAACACATCTCAGTCCTG-CTGAG  1086
      ||||||||| ||||||| ||||||| |||||||||||||| ||| |||  
seq2  CCACATGGTAATAAAGC-ACAATTATTAACACATCTCAGTTCTGCCTGGC  1097

seq1  CCCTTAGTTTAT--CATTATAAC--TTTTTGTAAACT--AAAG-AAGCAA  1129
      ||||||| ||||  |||||||||  ||||||||||||  |||| ||||||
seq2  CCCTTAGGTTATTCCATTATAACTTTTTTTGTAAACTTAAAAGAAAGCAA  1147

seq1  CAACT-CTCCAAAATATTTTAGA  1151
      | ||| ||||||||| |||||||
seq2  CCACTCCTCCAAAAT-TTTTAGA  1169