BAC Information

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BAC

Clone NameB6Ng01-221N23
Chromosome19 (Build37)
Map Location 7,870,711 - 7,871,781
singlet/doubletsinglet
Overlap geneBC014805
Upstream geneRps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1, Otub1, Cox8a, Nat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543
Downstream geneLOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221N23.bB6Ng01-221N23.g
ACCGA037044GA037045
length1,088968
definitionB6Ng01-221N23.b B6Ng01-221N23.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggctcctgagatccacacaccaggttccactggaagaaaagaa
aatcagcatggcagtgaaatttgttcaatttattcaatatgagcttccag
tttcactgtgccagccccatcttcctctccagcttccttttcatccttac
ccaactttttccattcagtgacagcttaaacaaaccttttcccaggaatc
ttcctataattctgtaggttatatttgtaacttatgccaagagatgctca
tatattctgaccattgcattatttattattattattattattattattat
tattattattattattactattactattattggattttatatctcagtgc
acagtttcctcaaagtctttccttagggcagatttcagatacagcctgat
tactgtttttattttatttatttacttgaatatttttggcaatcttgaga
ttaggacttagaccctatacacaggtggagagtactagaaattactcaca
ttctggtttataaaagtatataaattactgagagtttgttttatttttgt
gcattgctcagttgtggatcttgtgcctcacaagtgctgcagatacattc
tctcatgaacctacatttctagctatcacaatggcatgtacaactatcta
gatattttaggtttgccatcaaaataatgatggcctgtcacaacacatga
acactttacctaaactaacatgacacacaacaactccttcttttaaatat
ctttcttattacttttattctctgaattttttgcatgtcaacactgcaca
atgataatatccatccttttttgtgtttccacaacttcctctaagaggct
tgagaacaccgctcttccaaacctcttgttattttttcattatctattgt
ttggtgaatgttaacttatgtgttgcacttgggggcataggcacctagta
ttggttcatactttctaaaggtaacatgatagtccctccccctatcaacc
atcaacccccagtaattcttcagcttagggattggggcctctgagacctc
tgtttctattccatgcttggaattttgattgtccttga
gaattccaacaggatctctttccttacctccttttaaaaagacttagcaa
ttactaccacagggtcatcaatataggaatatttgatcagaagtgactct
acaaggtgaccacagacttaatacataaagacaaacttatacagagaact
acaaacgactcacgtgccacacatttcttttcatccacacagcctgttag
tattattgtgtgtcaggagccatctaggaaaaactaagggtagcagatgt
ccttcctagagttggtccacttttttgcatggactaaggtgggtaatctc
tgagaggcaagtcaaagagactttatctccggattgcttcttgcagctgt
tattccattcctatcattatgaaattaatttaacaatccctaggcattag
ccaaccctactgagctgatttcctgcagatcaacataaagattaactttc
atgaattaatgttgttttgatgaattaatgattttatagagttcctgttt
gattcaaataatcttagaaagaaagttttaaggggtggtgttagttgttt
tgctaaaaagatgtaataaaattagaatcaaggctatagtgtgcccactc
ctcatactagtaagtaaggctgcatagtaagaagtacaatgagctttcat
aattacactaaaaatcaagataatctttaggacaaatttatgttcaaggc
aaaacattcattctaggttagatccaaggatgaagccatgggtgttctct
atgattaagacaaggtcatatgaaactgttctttgaactttataatgaac
ttttatagtgaagcactgctttaaatttaatattatcatcctttttgtat
ctttccatgttttgtaaattttatgaggtaatttttcttaaaggaacttt
ttttctagttatgttgtaaaagtctagagaaaaagaaaataaatttgggc
tgttgcagtggttggcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_7870711_7871781
seq2: B6Ng01-221N23.b_47_1134

seq1  GAATTCA-GCTCCTGAGATCCACACACCAGGTTCCACTGGAAGAAAAGAA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCTCCTGAGATCCACACACCAGGTTCCACTGGAAGAAAAGAA  50

seq1  AATCAGCATGGCAGTGAAATTTGTTCAATTTATTCAATATGAGCTTCCAG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCATGGCAGTGAAATTTGTTCAATTTATTCAATATGAGCTTCCAG  100

seq1  TTTCACTGTGCCAGCCCCATCTTCCTCTCCAGCTTCCTTTTCATCCTTAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGTGCCAGCCCCATCTTCCTCTCCAGCTTCCTTTTCATCCTTAC  150

seq1  CCAACTTTTTCCATTCAGTGACAGCTTAAACAAACCTTTTCCCAGGAATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTTTCCATTCAGTGACAGCTTAAACAAACCTTTTCCCAGGAATC  200

seq1  TTCCTATAATTCTGTAGGTTATATTTGTAACTTATGCCAAGAGATGCTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATAATTCTGTAGGTTATATTTGTAACTTATGCCAAGAGATGCTCA  250

seq1  TATATTCTGACCATTGCATTATTTATTATTATTATTATTATTATTATTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTGACCATTGCATTATTTATTATTATTATTATTATTATTATTAT  300

seq1  TATTATTATTATTATTACTATTACTATTATTGGATTTTATATCTCAGTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTACTATTACTATTATTGGATTTTATATCTCAGTGC  350

seq1  ACAGTTTCCTCAAAGTCTTTCCTTAGGGCAGATTTCAGATACAGCCTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCCTCAAAGTCTTTCCTTAGGGCAGATTTCAGATACAGCCTGAT  400

seq1  TACTGTTTTTATTTTATTTATTTACTTGAATATTTTTGGCAATCTTGAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTTATTTTATTTATTTACTTGAATATTTTTGGCAATCTTGAGA  450

seq1  TTAGGACTTAGACCCTATACACAGGTGGAGAGTACTAGAAATTACTCACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGACTTAGACCCTATACACAGGTGGAGAGTACTAGAAATTACTCACA  500

seq1  TTCTGGTTTATAAAAGTATATAAATTACTGAGAGTTTGTTTTATTTTTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTATAAAAGTATATAAATTACTGAGAGTTTGTTTTATTTTTGT  550

seq1  GCATTGCTCAGTTGTGGATCTTGTGCCTCACAAGTGCTGCAGATACATTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTCAGTTGTGGATCTTGTGCCTCACAAGTGCTGCAGATACATTC  600

seq1  TCTCATGAACCTACATTTCTAGCTATCACAATGGCATGTACAACTATCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGAACCTACATTTCTAGCTATCACAATGGCATGTACAACTATCTA  650

seq1  GATATTTTAGGTTTGCCATCAAAATAATGATGGCCTGTCACAACACATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTAGGTTTGCCATCAAAATAATGATGGCCTGTCACAACACATGA  700

seq1  ACACTTTACCTAAACTAACATGACACACAACAACTCCTTCTTTTAAATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACCTAAACTAACATGACACACAACAACTCCTTCTTTTAAATAT  750

seq1  CTTTCTTATTACTTTTATTCTCTGAATTTTTTGCATGTCAACACTGCACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTATTACTTTTATTCTCTGAATTTTTTGCATGTCAACACTGCACA  800

seq1  ATGATAATATCCATCC-TTTTTGTG-TTCCACAACTTCCTCTAAGAGGCT  847
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  ATGATAATATCCATCCTTTTTTGTGTTTCCACAACTTCCTCTAAGAGGCT  850

seq1  TGAGAACACCGCTC-TCCAAACCTCTTGTTATTTTTTTCATATTCTATTG  896
      |||||||||||||| |||||||||||||||| |||||||||  |||||||
seq2  TGAGAACACCGCTCTTCCAAACCTCTTGTTA-TTTTTTCATTATCTATTG  899

seq1  TTTGGTGAATGTT-ACCTATGTG-TGCACT--GGGGCATAGGCACCTAGT  942
      ||||||||||||| || |||||| ||||||  ||||||||||||||||||
seq2  TTTGGTGAATGTTAACTTATGTGTTGCACTTGGGGGCATAGGCACCTAGT  949

seq1  AATGG-TCATAC-TTCTAAA-GTAACACGATAGTCCCT-CCCCTAGCAAC  988
      | ||| |||||| ||||||| |||||| |||||||||| |||||| ||||
seq2  ATTGGTTCATACTTTCTAAAGGTAACATGATAGTCCCTCCCCCTATCAAC  999

seq1  CATCAACCCCCAGTAAATTCTCAGC-TAGGGA-TGGGGCCTCTG-GAGCT  1035
      |||||||||||||||| |  ||||| |||||| ||||||||||| || ||
seq2  CATCAACCCCCAGTAATTCTTCAGCTTAGGGATTGGGGCCTCTGAGACCT  1049

seq1  CTG-TTCCAATCCATGC-TGGGATTTTGATTG-GCTTGA  1071
      ||| ||| | ||||||| ||| ||||||||||  |||||
seq2  CTGTTTCTATTCCATGCTTGGAATTTTGATTGTCCTTGA  1088