BAC Information

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BAC

Clone NameB6Ng01-222E06
Chromosome19 (Build37)18 (Build37)
Map Location 11,652,182 - 11,653,35849,476,720 - 49,476,759
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454
Downstream geneMs4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222E06.bB6Ng01-222E06.g
ACCGA037330GA037331
length1,157317
definitionB6Ng01-222E06.b B6Ng01-222E06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,652,182 - 11,653,358)(49,476,720 - 49,476,759)
sequence
gaattcacttttagtgcattttacacatatctattctatcgctgtgtctt
ttttcagagtgtcaatcacaacgtggacaaagacgtaccacatgggacct
ctttttctgcctcctcaaagcaacttcgctctggtattgatagcactcct
gtggcattagtatgtttggagcctcacagtctatatttttttagttagta
atttttatgacactttcagaaatatcttaagttagtgttgtgtccaacta
actatcctcatttataaatattctcatatttaagccaagctattaatttt
ttacataaataaaaatttaagcatttttcttcaagttctgttctataata
tttctgtaaaataaaatacaattctatatgatcttgttcatgcttctgtt
gtaacttatgtatttggacagtttacacattattaaatgcttggatattt
atgtggcaagaactatatactcaatatctgggggtttctttcagcaatat
atgccttcaacttcagtactcaaattaacgtaataatagaaatctcaaaa
aaaaaagcctctaaaaatccctccatagaaggaaaaacaatagaaaatag
cttctctttttttaaacttctctgagaaatttacagaattttatttttat
tgttggatcaaggaggttcattaactagagtgtgtgaccacattttgtgt
gtgtgtgtgtgtgtgcgtgtctgtgtacatgtgcacattcatggcctcca
gttaagactgtatcaaggtctctaagaatgattcaacagatcaagtgtga
tatctatgaatatatacaacgtatgtatgtgtgaagggtagactcactag
aagtttacaacacctcagatattaagcttttatttcgggtgataaacatt
gcagcaaaatgagtacaatgctgagcaaagactgacatctggaatcgttg
cagcagaagtatttatgtctcagaaaagacaatacacaagagaacgggct
ttgggagaatcatatacttttgaaattgacagtgagtgtactgatgtttt
tgccatctgaagtaatgttcagtggacctaaaacatctatggaggggaaa
agcattgcagatcagtttctgcatgcatgtcagagaataactagttgcct
tacaaaa
gaattccaggaagtttttaatttccttccttcttttttccctgaccaagt
tatcattgagtagagagttgttcagtttccatgtatatgtgggctttctc
ttgtttttgctattattgaagactgcctttggccatagtgatctgatagg
atgcatggtattatttcaaccttcttgtatcagtagatggttgttttgtg
accaattaaatggtcgattttgaagaaggtactatggggtgctgagaaga
aggtgtattcttttgtttcagggtgaaatgttctatagatatctgttaaa
tccatttggttcataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11652182_11653358
seq2: B6Ng01-222E06.b_44_1200

seq1  GAATTCACTTTTAGTGCATTTTACACATATCTATTCTATCGCTGTGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTAGTGCATTTTACACATATCTATTCTATCGCTGTGTCTT  50

seq1  TTTTCAGAGTGTCAATCACAACGTGGACAAAGACGTACCACATGGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGAGTGTCAATCACAACGTGGACAAAGACGTACCACATGGGACCT  100

seq1  CTTTTTCTGCCTCCTCAAAGCAACTTCGCTCTGGTATTGATAGCACTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGCCTCCTCAAAGCAACTTCGCTCTGGTATTGATAGCACTCCT  150

seq1  GTGGCATTAGTATGTTTGGAGCCTCACAGTCTATATTTTTTTAGTTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTAGTATGTTTGGAGCCTCACAGTCTATATTTTTTTAGTTAGTA  200

seq1  ATTTTTATGACACTTTCAGAAATATCTTAAGTTAGTGTTGTGTCCAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATGACACTTTCAGAAATATCTTAAGTTAGTGTTGTGTCCAACTA  250

seq1  ACTATCCTCATTTATAAATATTCTCATATTTAAGCCAAGCTATTAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTCATTTATAAATATTCTCATATTTAAGCCAAGCTATTAATTTT  300

seq1  TTACATAAATAAAAATTTAAGCATTTTTCTTCAAGTTCTGTTCTATAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATAAATAAAAATTTAAGCATTTTTCTTCAAGTTCTGTTCTATAATA  350

seq1  TTTCTGTAAAATAAAATACAATTCTATATGATCTTGTTCATGCTTCTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAAAATAAAATACAATTCTATATGATCTTGTTCATGCTTCTGTT  400

seq1  GTAACTTATGTATTTGGACAGTTTACACATTATTAAATGCTTGGATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTTATGTATTTGGACAGTTTACACATTATTAAATGCTTGGATATTT  450

seq1  ATGTGGCAAGAACTATATACTCAATATCTGGGGGTTTCTTTCAGCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCAAGAACTATATACTCAATATCTGGGGGTTTCTTTCAGCAATAT  500

seq1  ATGCCTTCAACTTCAGTACTCAAATTAACGTAATAATAGAAATCTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCAACTTCAGTACTCAAATTAACGTAATAATAGAAATCTCAAAA  550

seq1  AAAAAAGCCTCTAAAAATCCCTCCATAGAAGGAAAAACAATAGAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCCTCTAAAAATCCCTCCATAGAAGGAAAAACAATAGAAAATAG  600

seq1  CTTCTCTTTTTTTAAACTTCTCTGAGAAATTTACAGAATTTTATTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTTTTTAAACTTCTCTGAGAAATTTACAGAATTTTATTTTTAT  650

seq1  TGTTGGATCAAGGAGGTTCATTAACTAGAGTGTGTGACCACATTTTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGATCAAGGAGGTTCATTAACTAGAGTGTGTGACCACATTTTGTGT  700

seq1  GTGTGTGTGTGTGTGCGTGTCTGTGTACATGTGCACATTCATGGCCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCGTGTCTGTGTACATGTGCACATTCATGGCCTCCA  750

seq1  GTTAAGACTGTATCAAGGTCTCTAAGAATGATTCAACAGATCAAGTGTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGACTGTATCAAGGTCTCTAAGAATGATTCAACAGATCAAGTGTGA  800

seq1  TATCTATGAATATATACAACGTATGTATGTGTGAAGGGTAGACTCACTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATGAATATATACAACGTATGTATGTGTGAAGGGTAGACTCACTAG  850

seq1  AAGTTTACAACACCTCAGATATTAAGCTTTTATTTCGGGTGATAAACATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTACAACACCTCAGATATTAAGCTTTTATTTCGGGTGATAAACATT  900

seq1  GCAGCAAAATGAGTACAATGCTGAGCAAAGACTGACATCTGGAATCGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAATGAGTACAATGCTGAGCAAAGACTGACATCTGGAATCGTTG  950

seq1  CAGCAGAAGTATTTATGTCTCAGAAAAGACAATACACAAAGAGAAACGGG  1000
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  CAGCAGAAGTATTTATGTCTCAGAAAAGACAATACAC-AAGAG-AACGGG  998

seq1  CTTTGGGAGAATCAATATACTTTTGAAATTGGACAGTGAAGGTGTACTGA  1050
      ||||||||||||| |||||||||||||||| ||||||||  |||||||||
seq2  CTTTGGGAGAATC-ATATACTTTTGAAATT-GACAGTGA--GTGTACTGA  1044

seq1  TGTTTTTGCCATCTGAAAGTAAATTGGTTCAGGTGGACCTTAAAAACATC  1100
      ||||||||||||||| ||||||    ||||| ||||||||  ||||||||
seq2  TGTTTTTGCCATCTG-AAGTAA---TGTTCA-GTGGACCT--AAAACATC  1087

seq1  TATGGAGGGGGAAAAAGCATTTGCCAGATCAGTTTCTGCATGCAGTGTCA  1150
      ||||||||||  |||||||||   |||||||||||||||||||| |||||
seq2  TATGGAGGGG--AAAAGCATT--GCAGATCAGTTTCTGCATGCA-TGTCA  1132

seq1  GGAGATAACTTAGTTTGCCTTACAAAA  1177
      |   ||||| ||| |||||||||||||
seq2  GAGAATAAC-TAG-TTGCCTTACAAAA  1157

seq1: chr18_49476720_49476759
seq2: B6Ng01-222E06.g_341_382 (reverse)

seq1  GTTATGAAACAAATGGATTTAACAG--ATCTATAGAACATTT  40
      |||||||| ||||||||||||||||  |||||||||||||||
seq2  GTTATGAACCAAATGGATTTAACAGATATCTATAGAACATTT  42