BAC Information

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BAC

Clone NameB6Ng01-223G12
Chromosome19 (Build37)
Map Location 43,465,805 - 43,594,799
singlet/doubletdoublet
Overlap geneCnnm1, Got1
Upstream geneCrtac1, D19Ertd386e, Loxl4, 4833409A17Rik, Hps1, LOC545291, EG627624
Downstream geneNkx2-3, LOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc, Abcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223G12.bB6Ng01-223G12.g
ACCGA038159GA038160
length1,0651,109
definitionB6Ng01-223G12.b B6Ng01-223G12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,465,805 - 43,466,879)(43,593,689 - 43,594,799)
sequence
gaattcagggaccaaacccagggagcagtgatgcccacttttaggctggg
tcttcccacatcaattaatatgtcaagacaactgccacagacaaacccac
aggacaagctgtcctagaaacccctctttgaggcactcttcccagttgat
tcttgatgagttcaacttgacaattaaagctaaacagcacaatgcctcct
tcagaatactatgttagattttctactgaacagtctatacggttttcttt
tttatatctagaggattaagttcccaaaactaaaggaaaacttgaagatt
agccacttaataatttccatgctttaagatttttgaaataaacgttagtc
aatgaagaaaaacagacatgtctgccattttatttttactagaaaagacc
tttctaaaaacaaaaacaaaaacaaaaacctaccaactgcttactaatat
tacattccaaaactaaagaatactttatcatcagagaaattgaacatgtc
aaatagcaggtatttgaactggaaaaaaaataagctttgtaaaaaatcac
tctattttaactcttaacattttatctcagagaaatagaaatatgccagc
aagtaacatggtactaggcctggggactgaaactaatggtgtttcctgtt
tatggtcaattctgttttgttgcattcgtgttactgcacattttctataa
ctttagtgattgccaccccaactacatgattttcccctcacctttcctgt
gctttttttccctcagtgtcagccagtcacaaactcctaagctcgtacac
gccacctccttttccttctactaactgaagattacttattgctataccta
ttcccatcttatgaacaatgttctgcctagcctgtctaagaacataagca
ggaaagggaaagcatagggagaaagcggcctcctcactatggcactgtca
gtgtgtgtgtcctagtgatgactgtttattagatgtggggactatgcaca
gtgctcatggctagacacatattgtaccttgacagtgctgcgaagtagaa
taatctactatgatg
gaattcagtagtatcagcctaactcttattatctttatgatctttggaaa
ataatttctggcctcagtttccagactcctaatacctatgtattttgtgg
tttgttgaaataattaaatgagaataaagaaatgtgcaaagtatttagta
aatccttgttattaccgaggcttcagtttccaggagtgtctataattagg
agagctcaccatctgggagtcctctcctagggtccttcttagtgccgcca
tgtgttcaccagctctctacccaccaaccacgcattatccagactcgaca
gatattggaatgaccagccaccctttccctgtcccacctatatgagtctg
gtctttgggttcttggttttgtcacatcctcagaagtcccgactgcttat
cttcccattcctctatcccgccatcatcgccttgttttggggcttcatca
tttctcttctggatcatttcgggagcctcctgcttttggtcctctggggt
ttgactctgtgatgtcactcagaggagtctctaaatgttcatctgttggt
gtcaccccttttagatgtccccattaaaacagaaggttcttgtaaaaact
ccctgtggttcctccaccgagcctgctcaggagacgtggaaatgcagcgc
ctctaaaggctatgctgtcctgctcctgaggaccttgcacaggtgcccct
caggctggaacgcccccttgcccctgttaagccctttcttttattcactg
ttagcactccatcctctgtaagatcttctctgacccaccgtggaggttta
aaggctcagcgtggcctgtttcccaggagacaggggatatctccgtgtag
tgtagctttttctagccagtgccgggcacagtgggtgggtgcttgttgaa
gctgagtgggtggcaggaggatcgggccatggaacaaatcaggaacagtc
acaagcactccagaggagaggaaggacagtggcgggccatcatgcttgcc
ttcctgctccagttcaccggagaagtctgcgcctcatgccgtagtgatgg
tagcacactggtatgcccaggatggaaccttgggagagaactggagggag
ccacctcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43465805_43466879
seq2: B6Ng01-223G12.b_42_1106

seq1  GAATTCAGGGACCAAACCCAGGGAGCAGTGATGCCCACTTTTAGGCTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGACCAAACCCAGGGAGCAGTGATGCCCACTTTTAGGCTGGG  50

seq1  TCTTCCCACATCAATTAATATGTCAAGACAACTGCCACAGACAAACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCACATCAATTAATATGTCAAGACAACTGCCACAGACAAACCCAC  100

seq1  AGGACAAGCTGTCCTAGAAACCCCTCTTTGAGGCACTCTTCCCAGTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGCTGTCCTAGAAACCCCTCTTTGAGGCACTCTTCCCAGTTGAT  150

seq1  TCTTGATGAGTTCAACTTGACAATTAAAGCTAAACAGCACAATGCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGAGTTCAACTTGACAATTAAAGCTAAACAGCACAATGCCTCCT  200

seq1  TCAGAATACTATGTTAGATTTTCTACTGAACAGTCTATACGGTTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATACTATGTTAGATTTTCTACTGAACAGTCTATACGGTTTTCTTT  250

seq1  TTTATATCTAGAGGATTAAGTTCCCAAAACTAAAGGAAAACTTGAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCTAGAGGATTAAGTTCCCAAAACTAAAGGAAAACTTGAAGATT  300

seq1  AGCCACTTAATAATTTCCATGCTTTAAGATTTTTGAAATAAACGTTAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTTAATAATTTCCATGCTTTAAGATTTTTGAAATAAACGTTAGTC  350

seq1  AATGAAGAAAAACAGACATGTCTGCCATTTTATTTTTACTAGAAAAGACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGAAAAACAGACATGTCTGCCATTTTATTTTTACTAGAAAAGACC  400

seq1  TTTCTAAAAACAAAAACAAAAACAAAAACCTACCAACTGCTTACTAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAACAAAAACAAAAACAAAAACCTACCAACTGCTTACTAATAT  450

seq1  TACATTCCAAAACTAAAGAATACTTTATCATCAGAGAAATTGAACATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCAAAACTAAAGAATACTTTATCATCAGAGAAATTGAACATGTC  500

seq1  AAATAGCAGGTATTTGAACTGGAAAAAAAATAAGCTTTGTAAAAAATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCAGGTATTTGAACTGGAAAAAAAATAAGCTTTGTAAAAAATCAC  550

seq1  TCTATTTTAACTCTTAACATTTTATCTCAGAGAAATAGAAATATGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTAACTCTTAACATTTTATCTCAGAGAAATAGAAATATGCCAGC  600

seq1  AAGTAACATGGTACTAGGCCTGGGGACTGAAACTAATGGTGTTTCCTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACATGGTACTAGGCCTGGGGACTGAAACTAATGGTGTTTCCTGTT  650

seq1  TATGGTCAATTCTGTTTTGTTGCATTCGTGTTACTGCACATTTTCTATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCAATTCTGTTTTGTTGCATTCGTGTTACTGCACATTTTCTATAA  700

seq1  CTTTAGTGATTGCCACCCCAACTACATGATTTTCCCCTCACCTTTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTGATTGCCACCCCAACTACATGATTTTCCCCTCACCTTTCCTGT  750

seq1  GCTTTTTTTCCCTCAGTGTCAGCCAGTCACAAACTCCTAAGCTCGTACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTTCCCTCAGTGTCAGCCAGTCACAAACTCCTAAGCTCGTACAC  800

seq1  GCCACCTCCTTTTCCTTCTACTAACTGAAGATTACTTATTGCTATACCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCCTTTTCCTTCTACTAACTGAAGATTACTTATTGCTATACCTA  850

seq1  TTCCCATCTTATGAACAATGTTCTGCCTAGCCTGTCTAAGAACATAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATCTTATGAACAATGTTCTGCCTAGCCTGTCTAAGAACATAAGCA  900

seq1  GG-AAGGGAAAGCATAGGGAGAAAGCGGCCTCCTCACTATGGCACTGTCA  949
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGGAAAGCATAGGGAGAAAGCGGCCTCCTCACTATGGCACTGTCA  950

seq1  GTGTGTGTGTCCTAGTGATGACTGTTTATTAAGATTGTGGGGACTATGCA  999
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  GTGTGTGTGTCCTAGTGATGACTGTTTATT-AGA-TGTGGGGACTATGCA  998

seq1  CAGTGCTCATGGCTAGACACATTATTTTGTTAACCTTGAACAGTGCTGCG  1049
      ||||||||||||||||||||   || ||||  |||||| |||||||||||
seq2  CAGTGCTCATGGCTAGACAC---ATATTGT--ACCTTG-ACAGTGCTGCG  1042

seq1  AAGTAGAATAATTCCTTACTATGATG  1075
      ||||||||||||    ||||||||||
seq2  AAGTAGAATAAT---CTACTATGATG  1065

seq1: chr19_43593689_43594799
seq2: B6Ng01-223G12.g_67_1175 (reverse)

seq1  ATGA-GTGGCTCCCCTCCCAGTT-TCTCCC-AGGTTCCATTCTGGGCATA  47
      |||| |||||||||   |||||| |||||| ||||||||| |||||||||
seq2  ATGAGGTGGCTCCC--TCCAGTTCTCTCCCAAGGTTCCATCCTGGGCATA  48

seq1  CCCAGGTGTGCTACCCATCACTACGGCATGA-GCGCAGACTTCTCCGGGT  96
      ||   |||||||| ||||||||||||||||| ||||||||||||||||  
seq2  CC--AGTGTGCTA-CCATCACTACGGCATGAGGCGCAGACTTCTCCGGTG  95

seq1  GACTGGAGCAAGGAAGGCAAGCATGATGGCCCGCCACTGTTCTTCCTCTC  146
       |||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  AACTGGAGC-AGGAAGGCAAGCATGATGGCCCGCCACTGTCCTTCCTCTC  144

seq1  CTCTGGAGTGCTTGTGACTG-TCCTGTTTTGTTCCCATGGCCCGATCCTC  195
      |||||||||||||||||||| ||||| |||||| ||||||||||||||||
seq2  CTCTGGAGTGCTTGTGACTGTTCCTGATTTGTT-CCATGGCCCGATCCTC  193

seq1  CTGCCACCCACTCAGCTTCAACAAGCACCCACCCACTGTGCCCGGCACTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCCACTCAGCTTCAACAAGCACCCACCCACTGTGCCCGGCACTG  243

seq1  GCTAGAAAAAGCTACACTACACGGAGATATCCCCTGTCTCCTGGGAAACA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAAAAAGCTACACTACACGGAGATATCCCCTGTCTCCTGGGAAACA  293

seq1  GGCCACGCTGAGCCTTTAAACCTCCACGGTGGGTCAGAGAAGATCTTACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACGCTGAGCCTTTAAACCTCCACGGTGGGTCAGAGAAGATCTTACA  343

seq1  GAGGATGGAGTGCTAACAGTGAATAAAAGAAAGGGCTTAACAGGGGCAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGGAGTGCTAACAGTGAATAAAAGAAAGGGCTTAACAGGGGCAAG  393

seq1  GGGGCGTTCCAGCCTGAGGGGCACCTGTGCAAGGTCCTCAGGAGCAGGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTTCCAGCCTGAGGGGCACCTGTGCAAGGTCCTCAGGAGCAGGAC  443

seq1  AGCATAGCCTTTAGAGGCGCTGCATTTCCACGTCTCCTGAGCAGGCTCGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCCTTTAGAGGCGCTGCATTTCCACGTCTCCTGAGCAGGCTCGG  493

seq1  TGGAGGAACCACAGGGAGTTTTTACAAGAACCTTCTGTTTTAATGGGGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGAACCACAGGGAGTTTTTACAAGAACCTTCTGTTTTAATGGGGAC  543

seq1  ATCTAAAAGGGGTGACACCAACAGATGAACATTTAGAGACTCCTCTGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAGGGGTGACACCAACAGATGAACATTTAGAGACTCCTCTGAGT  593

seq1  GACATCACAGAGTCAAACCCCAGAGGACCAAAAGCAGGAGGCTCCCGAAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCACAGAGTCAAACCCCAGAGGACCAAAAGCAGGAGGCTCCCGAAA  643

seq1  TGATCCAGAAGAGAAATGATGAAGCCCCAAAACAAGGCGATGATGGCGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAGAAGAGAAATGATGAAGCCCCAAAACAAGGCGATGATGGCGGG  693

seq1  ATAGAGGAATGGGAAGATAAGCAGTCGGGACTTCTGAGGATGTGACAAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGAATGGGAAGATAAGCAGTCGGGACTTCTGAGGATGTGACAAAA  743

seq1  CCAAGAACCCAAAGACCAGACTCATATAGGTGGGACAGGGAAAGGGTGGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAACCCAAAGACCAGACTCATATAGGTGGGACAGGGAAAGGGTGGC  793

seq1  TGGTCATTCCAATATCTGTCGAGTCTGGATAATGCGTGGTTGGTGGGTAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTCCAATATCTGTCGAGTCTGGATAATGCGTGGTTGGTGGGTAG  843

seq1  AGAGCTGGTGAACACATGGCGGCACTAAGAAGGACCCTAGGAGAGGACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGGTGAACACATGGCGGCACTAAGAAGGACCCTAGGAGAGGACTC  893

seq1  CCAGATGGTGAGCTCTCCTAATTATAGACACTCCTGGAAACTGAAGCCTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGTGAGCTCTCCTAATTATAGACACTCCTGGAAACTGAAGCCTC  943

seq1  GGTAATAACAAGGATTTACTAAATACTTTGCACATTTCTTTATTCTCATT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAACAAGGATTTACTAAATACTTTGCACATTTCTTTATTCTCATT  993

seq1  TAATTATTTCAACAAACCACAAAATACATAGGTATTAGGAGTCTGGAAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATTTCAACAAACCACAAAATACATAGGTATTAGGAGTCTGGAAAC  1043

seq1  TGAGGCCAGAAATTATTTTCCAAAGATCATAAAGATAATAAGAGTTAGGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGAAATTATTTTCCAAAGATCATAAAGATAATAAGAGTTAGGC  1093

seq1  TGATACTACTGAATTC  1111
      ||||||||||||||||
seq2  TGATACTACTGAATTC  1109