BAC Information

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BAC

Clone NameB6Ng01-223P05
Chromosome19 (Build37)
Map Location 43,699,769 - 43,843,375
singlet/doubletdoublet
Overlap geneLOC100042700, LOC100043245, Slc25a28, Entpd7, Cox15, Cutc
Upstream gene4833409A17Rik, Hps1, LOC545291, EG627624, Cnnm1, Got1, Nkx2-3
Downstream geneAbcc2, Dnmbp, LOC668408, Cpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223P05.bB6Ng01-223P05.g
ACCGA038551GA038552
length1,1681,080
definitionB6Ng01-223P05.b B6Ng01-223P05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,842,199 - 43,843,375)(43,699,769 - 43,700,842)
sequence
gaattccacactagaagacacactatgcccttgcctcaactttgatgtca
taaatgtaagagagagaaaggtaagagaagtctgggaacttttatgctat
accattttactgtaacttttcaatctgccgagtaacaagcccagggagta
catgacagaaagaaaaagtaaaagacgtagaaaacaaaacaaccttcctt
cacagtaagctactgaggaggttacgtgaaagaacctgagactataacac
aatagaatgagaatttttattttacaaaaccaaaaggcaaaaaagtggca
ctaaattgaccctgaaacaaactctgatttcatactttgcagctgaactt
tgccagttcatcagttaagcccactgagaatgactacgcctctcttcttg
taagaagtacagactaaatttatccatgatgacagacaccaatgactact
aaagaaagtaattgcattgctgttccaatgtctttttcttcttacaaaca
tctatggccatgtgaaaggttagagcttcgtcaggtattgtcagtccaac
ttctcccttcacactgttgatgcccatgtctctccgacaagtttaactaa
actaggacgtcctttgcaattgcattcaaagtccttacttttgtcacatc
tgttacctttagagaatattctgaatgagcaagcgaagctcccattgcga
cagaggaatttctgaaataggaataacaaaggacggagagttaatcaatc
atttgtcaaatacaacctcctactggcacttccatctctagactcattaa
ttcatggctcagagtaagggaaggtcaaggatgctgcactaccatagtcc
acaatttctattaattaattacttgaaaagtctggtagctaaatctacga
ggtaagagactggattttataactgaaaatgtacacactaagggtcttcc
cttcttttatattgcaccccctcaactagtaaatgagatgatgattcagt
ttagttgtaggaacccttttatgatattgaaaaaacaaccacacagtaga
ttaagccttatgatgataagtttcaaaaacacttcagtagagagcaaggt
agaagagactatttacaacagggagagataagaccgtgcttgagcgctcg
atcaatgattaactctgt
gaattcctcctttgggctggagagatggctcagcggttaagagcactgac
tgcttttccagaggtcctgagttcaatccccagcaaccacatggtggctc
acaaccatctgtaatgggatctgatgtcctcttctgctgtgtctgaagac
agtgacggtgtactcatatacataataaataaataagaagcatctatggt
gctagcttccccacagcaggatgggaggctgagacaggaaaatcccggaa
gcctcgggcctcacatatgcaacaatgagcaagagatgttgactcaaaca
aactgggaagtgagacccaatatctgaggttgtcctctgatgtcctgtgt
gccccatggcatgtgatcatgctcacacgtaaacatgcacacacacacac
acacacacacacacacacacacacacacacacacaagatcataagaatca
catttatctttgaatagaagccaaagatccttttctataccaaccatctt
gtcaaagatcattgtcaaaaagctgtatggattgcaaagtgcaaaagaaa
caaagggagattctcttccaattgtcctgaaggggcgtctcggggtgtca
gctgccaggaaaggtcaagtgatagaccgtgaaggtgacttctcttatcc
tctgccttcttttcagacttccctctatccactccctaaacaaaattgga
ggtccagaggaggtacctcatttctcaagacatacaggcagttcattcaa
cctaattgttaaatgcagttaatgtatagcacaagatgtatgtcttcctg
tagtagctacgagaactttaaacagcttagtaagacctactcgataccta
agtgcaattttatgacctccgggagatgctaggacgttagccaccactca
tttgccaggtggtcaaaatcagatccagccccaaagtctatagattacat
gtcagatcccacatccccatgccataggtcactcttatggagggccagga
tgggatatccaccacagcttcctttcagcactttggtgtggcgtgcaggc
ccttacctcattgaacacttgaacagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_43842199_43843375
seq2: B6Ng01-223P05.b_47_1214 (reverse)

seq1  ACAGAGTTAATCATTGATCTGAGGCGGCCTC-AGCACGGTCTTTATCTCT  49
      ||||||||||||||||||| || |||  ||| ||||||||| ||||||||
seq2  ACAGAGTTAATCATTGATC-GA-GCG--CTCAAGCACGGTC-TTATCTCT  45

seq1  -CCTGTTGTAAATAGTCTTCTCTTACCTTTGCTCTCTACTGGAGTTGTTT  98
       |||||||||||||||| |||  |||| ||||||||||||| |||  |||
seq2  CCCTGTTGTAAATAGTC-TCTTCTACC-TTGCTCTCTACTGAAGTGTTTT  93

seq1  TGAAACTTTATCATCATTAAGGGCTTTAATCTACTGTGTGGTTTGTTTTT  148
      |||||| ||||||||| |||||   |||||||||||||||| ||||||||
seq2  TGAAAC-TTATCATCA-TAAGG--CTTAATCTACTGTGTGG-TTGTTTTT  138

seq1  TCAATATCAT-AAAGGGTTCCTACAACTTAACTTGAATCATCATCTCATT  197
      |||||||||| ||||||||||||||||| ||| |||||||||||||||||
seq2  TCAATATCATAAAAGGGTTCCTACAACTAAAC-TGAATCATCATCTCATT  187

seq1  TACTAGTTGAGGGGGTGCAATATAAAAGAA-GGAAGACCCTTAGTGTGTA  246
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TACTAGTTGAGGGGGTGCAATATAAAAGAAGGGAAGACCCTTAGTGTGTA  237

seq1  CATTTTCAGTTATAAAATCCAGTCTCTTACCTCGTAGATTTAGCTACCAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCAGTTATAAAATCCAGTCTCTTACCTCGTAGATTTAGCTACCAG  287

seq1  ACTTTTCAAGTAATTAATTAATAGAAATTGTGGACTATGGTAGTGCAGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCAAGTAATTAATTAATAGAAATTGTGGACTATGGTAGTGCAGCA  337

seq1  TCCTTGACCTTCCCTTACTCTGAGCCATGAATTAATGAGTCTAGAGATGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGACCTTCCCTTACTCTGAGCCATGAATTAATGAGTCTAGAGATGG  387

seq1  AAGTGCCAGTAGGAGGTTGTATTTGACAAATGATTGATTAACTCTCCGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAGTAGGAGGTTGTATTTGACAAATGATTGATTAACTCTCCGTC  437

seq1  CTTTGTTATTCCTATTTCAGAAATTCCTCTGTCGCAATGGGAGCTTCGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTATTCCTATTTCAGAAATTCCTCTGTCGCAATGGGAGCTTCGCT  487

seq1  TGCTCATTCAGAATATTCTCTAAAGGTAACAGATGTGACAAAAGTAAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTCAGAATATTCTCTAAAGGTAACAGATGTGACAAAAGTAAGGA  537

seq1  CTTTGAATGCAATTGCAAAGGACGTCCTAGTTTAGTTAAACTTGTCGGAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGCAATTGCAAAGGACGTCCTAGTTTAGTTAAACTTGTCGGAG  587

seq1  AGACATGGGCATCAACAGTGTGAAGGGAGAAGTTGGACTGACAATACCTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGGCATCAACAGTGTGAAGGGAGAAGTTGGACTGACAATACCTG  637

seq1  ACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGAAGAAAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCTCTAACCTTTCACATGGCCATAGATGTTTGTAAGAAGAAAAAG  687

seq1  ACATTGGAACAGCAATGCAATTACTTTCTTTAGTAGTCATTGGTGTCTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGGAACAGCAATGCAATTACTTTCTTTAGTAGTCATTGGTGTCTGT  737

seq1  CATCATGGATAAATTTAGTCTGTACTTCTTACAAGAAGAGAGGCGTAGTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGATAAATTTAGTCTGTACTTCTTACAAGAAGAGAGGCGTAGTC  787

seq1  ATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAGTGGGCTTAACTGATGAACTGGCAAAGTTCAGCTGCAAAGTAT  837

seq1  GAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTTTTGCCTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGAGTTTGTTTCAGGGTCAATTTAGTGCCACTTTTTTGCCTTTT  887

seq1  GGTTTTGTAAAATAAAAATTCTCATTCTATTGTGTTATAGTCTCAGGTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTAAAATAAAAATTCTCATTCTATTGTGTTATAGTCTCAGGTTC  937

seq1  TTTCACGTAACCTCCTCAGTAGCTTACTGTGAAGGAAGGTTGTTTTGTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGTAACCTCCTCAGTAGCTTACTGTGAAGGAAGGTTGTTTTGTTT  987

seq1  TCTACGTCTTTTACTTTTTCTTTCTGTCATGTACTCCCTGGGCTTGTTAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTCTTTTACTTTTTCTTTCTGTCATGTACTCCCTGGGCTTGTTAC  1037

seq1  TCGGCAGATTGAAAAGTTACAGTAAAATGGTATAGCATAAAAGTTCCCAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGATTGAAAAGTTACAGTAAAATGGTATAGCATAAAAGTTCCCAG  1087

seq1  ACTTCTCTTACCTTTCTCTCTCTTACATTTATGACATCAAAGTTGAGGCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTTACCTTTCTCTCTCTTACATTTATGACATCAAAGTTGAGGCA  1137

seq1  AGGGCATAGTGTGTCTTCTAGTGTGGAATTC  1177
      |||||||||||||||||||||||||||||||
seq2  AGGGCATAGTGTGTCTTCTAGTGTGGAATTC  1168

seq1: chr19_43699769_43700842
seq2: B6Ng01-223P05.g_67_1146

seq1  GAATTCCTCCTTTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGAC  50

seq1  TGCTTTTCCAGAGGTCCTGAGTTCAATCCCCAGCAACCACATGGTGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCCAGAGGTCCTGAGTTCAATCCCCAGCAACCACATGGTGGCTC  100

seq1  ACAACCATCTGTAATGGGATCTGATGTCCTCTTCTGCTGTGTCTGAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATCTGTAATGGGATCTGATGTCCTCTTCTGCTGTGTCTGAAGAC  150

seq1  AGTGACGGTGTACTCATATACATAATAAATAAATAAGAAGCATCTATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGGTGTACTCATATACATAATAAATAAATAAGAAGCATCTATGGT  200

seq1  GCTAGCTTCCCCACAGCAGGATGGGAGGCTGAGACAGGAAAATCCCGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTCCCCACAGCAGGATGGGAGGCTGAGACAGGAAAATCCCGGAA  250

seq1  GCCTCGGGCCTCACATATGCAACAATGAGCAAGAGATGTTGACTCAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGGCCTCACATATGCAACAATGAGCAAGAGATGTTGACTCAAACA  300

seq1  AACTGGGAAGTGAGACCCAATATCTGAGGTTGTCCTCTGATGTCCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGGAAGTGAGACCCAATATCTGAGGTTGTCCTCTGATGTCCTGTGT  350

seq1  GCCCCATGGCATGTGATCATGCTCACACGTAAACATGCACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGGCATGTGATCATGCTCACACGTAAACATGCACACACACACAC  400

seq1  ACACACACACACACACACACACACACACACACACAAGATCATAAGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACAAGATCATAAGAATCA  450

seq1  CATTTATCTTTGAATAGAAGCCAAAGATCCTTTTCTATACCAACCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTTTGAATAGAAGCCAAAGATCCTTTTCTATACCAACCATCTT  500

seq1  GTCAAAGATCATTGTCAAAAAGCTGTATGGATTGCAAAGTGCAAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGATCATTGTCAAAAAGCTGTATGGATTGCAAAGTGCAAAAGAAA  550

seq1  CAAAGGGAGATTCTCTTCCAATTGTCCTGAAGGGGCGTCTCGGGGTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAGATTCTCTTCCAATTGTCCTGAAGGGGCGTCTCGGGGTGTCA  600

seq1  GCTGCCAGGAAAGGTCAAGTGATAGACCGTGAAGGTGACTTCTCTTATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGAAAGGTCAAGTGATAGACCGTGAAGGTGACTTCTCTTATCC  650

seq1  TCTGCCTTCTTTTCAGACTTCCCTCTATCCACTCCCTAAACAAAATTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCTTTTCAGACTTCCCTCTATCCACTCCCTAAACAAAATTGGA  700

seq1  GGTCCAGAGGAGGTACCTCATTTCTCAAGACATACAGGCAGTTCATTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGAGGAGGTACCTCATTTCTCAAGACATACAGGCAGTTCATTCAA  750

seq1  CCTAATTGTTAAATGCAGTTAATGTATAGCACAAGATGTATGTCTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGTTAAATGCAGTTAATGTATAGCACAAGATGTATGTCTTCCTG  800

seq1  TAGTAGCTACGAGAAC-TTAAACAGCTTAGTAAGACCTACTCGATACCTA  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGTAGCTACGAGAACTTTAAACAGCTTAGTAAGACCTACTCGATACCTA  850

seq1  AGTGCAA-TTTATGACCTCCGGGAGATGCTAGGACGTTTAGCCACCACTC  898
      ||||||| |||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGCAATTTTATGACCTCCGGGAGATGCTAGGACG-TTAGCCACCACTC  899

seq1  ATTTGCCAGGTGGTCAAAATCAGATCCAGCCCCAAAGTCTATAGATTACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCAGGTGGTCAAAATCAGATCCAGCCCCAAAGTCTATAGATTACA  949

seq1  TGTCAGAT-CCACATCCCCATGCCATAGGTCACTCTAATGGAGGGGCAGG  997
      |||||||| ||||||||||||||||||||||||||| |||||||| || |
seq2  TGTCAGATCCCACATCCCCATGCCATAGGTCACTCTTATGGAGGGCCA-G  998

seq1  GATGGGATATCCA-CACAGGCTTTCCTTTCAGCACTT--GTGT-GCGTGC  1043
      ||||||||||||| |||||   |||||||||||||||  |||| ||||||
seq2  GATGGGATATCCACCACAG--CTTCCTTTCAGCACTTTGGTGTGGCGTGC  1046

seq1  AGGGCCTTA-CTCATTG-ACAC-TGGACAGCCAC  1074
      ||| ||||| ||||||| |||| || ||||||||
seq2  AGGCCCTTACCTCATTGAACACTTGAACAGCCAC  1080