BAC Information

Click to search

BAC

Clone NameB6Ng01-224J14
Chromosome19 (Build37)
Map Location 45,043,094 - 45,044,258
singlet/doubletsinglet
Overlap gene6030443O07Rik
Upstream geneCpn1, Cyp2c44, Erlin1, Chuk, Cwf19l1, Bloc1s2, Pkd2l1, Scd3, LOC629152, Scd2, Scd4, Scd1, Wnt8b, Sec31b, Ndufb8, Hif1an, Pax2, LOC383450, LOC100042752
Downstream geneSema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik, Fbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2, 9130011E15Rik, EG627939
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J14.bB6Ng01-224J14.g
ACCGA039010GA039011
length1,1671,209
definitionB6Ng01-224J14.b B6Ng01-224J14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaggcacaagaacagtttctcagccacatactaaaatttttc
tcctctgaaacctataaatcaggctttcacagttcaaaccactctcagaa
acaaagtcttccttattcctactaggatgtcccactaaaccccacttaaa
gcattctactgctttccaaatccaaagtcccaaagtccacattcttccaa
acaaaagcatggtcaggcctatcactgcaataccccagtccctggtacca
acttctgtttgaagggtgctagtagatgagggtctttaaggccacacaca
caaagacacacctccaccaacaaggccacacctcctaatagtgccactcc
ctgggctgagcattatacaaaccatcccaatcaggatttctacacttttc
tcctcaataaaagaacattcaaagaaatgatgaatagaaacaaaagtccc
aaggtgggcatggtggcctaggctggtaaacttaacattcaggagaggct
gaggcagaaagactgctgagtttgaggacagcttgggctacatagtaaga
ccttgtttcaaaataagaactccaaagcatttaacaagtgtcagcattat
aaagcagcttggtgtttatctcacttttcaataccttccacgagatgtcc
agttagggactagctgtaccaaaccaaagaaggttatggggatgactgga
gagttcatttatgcccagacagagttcatgaacctgaaaaagagagaacc
agctcagaatcagatctacataacttcttgcctaacataaatcactaaaa
aagatttctgaatttaaaaaacacttgtcatttagaacccactacagtga
acgtaatacaaatttcggtttttgtaaagtactgtgaaatagtaatacat
tctactagcacatcacatcactctcatgttgttgctcaccttgtctttat
ttacacttggtggtgagtcttgaaagaatacagttattctaatcccagtc
tcccccaaagtgtatatattacatacacaagaccacatatattcacgacc
tgaaaatttcttgccactctagattctgtttaccagtattcttcctctgg
tgacaaagcccagttcttataccttgcagccaagtgtacacccatgaact
atgccttctagctctct
gaattctcacccaaggaataccgaaaggctgagaaacacctgaaaaaatg
ttcaacatccttaatcagagaaatgcaaatcaaaacaaccctgagattcc
atctcacaccagtcagaatggctaagatcaaaaattcaggtgacaacaga
tgctggtgaggatgtggagaaagaggaacactcctccattgttggtggga
ttgcaagcttgtacaaccactctggaagtcagtctggcggttcctccgaa
aattggacatagtactaccggatgatcccgcaatacctctcctgggcata
tatccagaagatgtcccaaccggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctggaaagaacccagatgtc
cctcaacagaggattggatacaaaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaattcacgaaattcctaggcaaatg
gttggacctggagggtatcatcctgagtgaggtaacccaatcacaaaaga
actcaaatgagccgggtgtggtggcgcacgcctttaatcccagcactcgg
gaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaa
gtgagctccagaacagccagggctatacagagaaaccctggctcgaaaaa
aaaaaaaaagaactcaatgaaatgtactcactgataagtggatattaacc
cagaaacttagtatagcgagatataaggtacaatatgtaaaacatatgaa
actgaagaagaacgaagaccaaagtgtggacactttgctcattcttagaa
ttggaaacaatcacccatggaaggagttacagagacaaagtttggagctg
agaacaaaggatggtccatctagagactgccatatccagggatccatccc
ataattaagcctccaggcgatgaccaccattgcagcgaatgacaccattg
gcaatacactagcaagccttttgttgcaggacggtgaatattagcttgtc
cttgtggagaactaggcaaggcctacaaacccaggagtgatgctcacagt
cagctatttggaatgaatccaaggtcctatgaagagacctaggaacgtac
ccagaatctaagagaaatctgcaaacctttatccgaagggaacacaacac
ttatgatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45043094_45044258
seq2: B6Ng01-224J14.b_50_1216 (reverse)

seq1  AGAGAGCTAG-AGGCATAGTTCATGGTTGTACACTTGCCTGGCAAGTATA  49
      |||||||||| ||||||||||||||| |||||||||| |||  | |||||
seq2  AGAGAGCTAGAAGGCATAGTTCATGGGTGTACACTTGGCTGCAAGGTATA  50

seq1  AG-ACTGGGCTTTGTCACCAGAAGAAAAGAAAAATACTG--TAACAGAAT  96
      || ||||||||||||||||||     | ||| |||||||   ||||||||
seq2  AGAACTGGGCTTTGTCACCAG-----AGGAAGAATACTGGTAAACAGAAT  95

seq1  CTAAGAGT-GCAAG-AATTTTCAGGTCGTGAATATATGTGGTCTTGTGTA  144
      || ||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  CT-AGAGTGGCAAGAAATTTTCAGGTCGTGAATATATGTGGTCTTGTGTA  144

seq1  TGTTATTATATACACTT--GGGGAGACTGGGATTTAGAAT-ACTGTATTC  191
      || || |||||||||||  ||||||||||||| ||||||| |||||||||
seq2  TG-TAATATATACACTTTGGGGGAGACTGGGA-TTAGAATAACTGTATTC  192

seq1  TTTCAAGACTCACCACCAAGTGTAAATAAAGACAAGGTGAGCAACAACAT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACTCACCACCAAGTGTAAATAAAGACAAGGTGAGCAACAACAT  242

seq1  GAGAGTGATGTGATGTGCTAGTAGAATGTATTACTATTTCACAGTACTTT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGATGTGATGTGCTAGTAGAATGTATTACTATTTCACAGTACTTT  292

seq1  ACAAAAACCGAAATTTGTATTACGTTCACTGTAGTGGGTTCTAAATGACA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACCGAAATTTGTATTACGTTCACTGTAGTGGGTTCTAAATGACA  342

seq1  AGTGTTTTTTAAATTCAGAAATCTTTTTTAGTGATTTATGTTAGGCAAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTTTAAATTCAGAAATCTTTTTTAGTGATTTATGTTAGGCAAGA  392

seq1  AGTTATGTAGATCTGATTCTGAGCTGGTTCTCTCTTTTTCAGGTTCATGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTAGATCTGATTCTGAGCTGGTTCTCTCTTTTTCAGGTTCATGA  442

seq1  ACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTGGGCATAAATGAACTCTCCAGTCATCCCCATAACCTTCTTT  492

seq1  GG-TTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAGGTATTGAAA  540
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGTACAGCTAGTCCCTAACTGGACATCTCGTGGAAGGTATTGAAA  542

seq1  AGTGAGATAAACACCAAGCTGCTTTATAATGCTGACACTTGTTAAATGCT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATAAACACCAAGCTGCTTTATAATGCTGACACTTGTTAAATGCT  592

seq1  TTGGAGTTCTTATTTTGAAACAAGGTCTTACTATGTAGCCCAAGCTGTCC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTCTTATTTTGAAACAAGGTCTTACTATGTAGCCCAAGCTGTCC  642

seq1  TCAAACTCAGCAGTCTTTCTGCCTCAGCCTCTCCTGAATGTTAAGTTTAC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTCAGCAGTCTTTCTGCCTCAGCCTCTCCTGAATGTTAAGTTTAC  692

seq1  CAGCCTAGGCCACCATGCCCACCTTGGGACTTTTGTTTCTATTCATCATT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTAGGCCACCATGCCCACCTTGGGACTTTTGTTTCTATTCATCATT  742

seq1  TCTTTGAATGTTCTTTTATTGAGGAGAAAAGTGTAGAAATCCTGATTGGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATGTTCTTTTATTGAGGAGAAAAGTGTAGAAATCCTGATTGGG  792

seq1  ATGGTTTGTATAATGCTCAGCCCAGGGAGTGGCACTATTAGGAGGTGTGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTGTATAATGCTCAGCCCAGGGAGTGGCACTATTAGGAGGTGTGG  842

seq1  CCTTGTTGGTGGAGGTGTGTCTTTGTGTGTGTGGCCTTAAAGACCCTCAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGGTGGAGGTGTGTCTTTGTGTGTGTGGCCTTAAAGACCCTCAT  892

seq1  CTACTAGCACCCTTCAAACAGAAGTTGGTACCAGGGACTGGGGTATTGCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGCACCCTTCAAACAGAAGTTGGTACCAGGGACTGGGGTATTGCA  942

seq1  GTGATAGGCCTGACCATGCTTTTGTTTGGAAGAATGTGGACTTTGGGACT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGGCCTGACCATGCTTTTGTTTGGAAGAATGTGGACTTTGGGACT  992

seq1  TTGGATTTGGAAAGCAGTAGAATGCTTTAAGTGGGGTTTAGTGGGACATC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTTGGAAAGCAGTAGAATGCTTTAAGTGGGGTTTAGTGGGACATC  1042

seq1  CTAGTAGGAATAAGGAAGACTTTGTTTCTGAGAGTGGTTTGAACTGTGAA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGGAATAAGGAAGACTTTGTTTCTGAGAGTGGTTTGAACTGTGAA  1092

seq1  AGCCTGATTTATAGGTTTCAGAGGAGAAAAATTTTAGTATGTGGCTGAGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGATTTATAGGTTTCAGAGGAGAAAAATTTTAGTATGTGGCTGAGA  1142

seq1  AACTGTTCTTGTGCCTGAAGAATTC  1165
      |||||||||||||||||||||||||
seq2  AACTGTTCTTGTGCCTGAAGAATTC  1167