BAC Information

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BAC

Clone NameB6Ng01-224O10
Chromosome19 (Build37)
Map Location 27,356,679 - 27,474,961
singlet/doubletdoublet
Overlap geneKcnv2, D19Bwg1357e
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588
Downstream geneLOC667868, LOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224O10.bB6Ng01-224O10.g
ACCGA039233GA039234
length903743
definitionB6Ng01-224O10.b B6Ng01-224O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,474,065 - 27,474,961)(27,356,679 - 27,357,419)
sequence
gaattcagtgactttctgtgatgatttccttaggcatttgggggggggag
tggggagcagtatcactttagttctaactactggcaatgctgatgtcaat
tcaggatggtgggcatcttcttgctagattattttctcatctccctgtgt
gtattttttactgcagtaaacagccttcttttgctatgaataagcaacct
agctaagccttcatactctttgtgattagcagagcagcttcctgtctcct
ggctcagcagggaggttctgaggtccgtgcttcatcaaggctcatgctac
attaagtctcctgcagattgactgtccactcagatcgcagtaggtgctgt
ccttagtaatagcggcctgacccatactcacaatgagtggaggtagctct
tctaactttaaaaagtccttgggtttgatcagttagttcaaacagattgt
tcaataatggccaccacagcagagaatgaacagttctgaaagtaattctt
tgtgctttgataagacatgtcagaattgacgtcacaagtgatgtgagtgg
agtgaggaaaatacccagggtgtgttcttcatccccatcaaatctcagcg
gaactctgggaatataataaacagtggacgtttttgttttccattatcta
ggaaatcatcagttccttgcccagcatagttaatgacaaatacggaaagg
aaagtcctcttgtacttgattgagccccagagacctccgcccacacggtg
ctcgagctcatcggagcttctgcagaagggtgatggcaacgcgcacaggt
gaaggccagtctcatggactccaagaaattctctagatgcctcctctctc
cctccatttccttagactacttagtggaattccatagtctcaagagctta
ctt
gaattcagcatagcgacacactattggcttattcaaacatcagcagaaaa
attatatgtacgtgcagatcaaggtgtcagcagcaaaaaaatacgtgcag
gaattctgtgagttggatgtttatcaatgctcgcagagtatctggtcagt
ttgactcagttcagatagccctgttatgtcctcacattcttctttatctt
tatggtcaagctgttcccaggaatgttttaactacagggcgtgcccaggt
ttgtttttctttttttctcagccccaggaaacctctaggctcacaaacaa
ccagcaatttctgagtactttatatgacttacaggtcttgaaatttcatc
tttctttcagatctggatatgttgggaagttctaggaggagcagttgaga
aaccttaatcaaaatatactgtacgaaaaaaatctattttcactaaaaga
gagaggagacattaaaatgattctatagttacaataaaagcatggatata
aggtaaaacagcacatcacaaagtaaaattacacagtgcagtatgattaa
aatagctttaaaatgtacatataaaagctggaacacatagctgggataac
agtagtatagagtatgatagggatcatttctactatgctgcagtgatgat
tgctttttaagtaagagttcctgtgaaattaaggaggttttttttttttc
tttttgtggagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_27474065_27474961
seq2: B6Ng01-224O10.b_48_950 (reverse)

seq1  AAGTAAGCTCTTGAGACTATGGAATT-CACTAAGAAGTCTTAGGGAAATG  49
      |||||||||||||||||||||||||| ||||||| |||| || |||||||
seq2  AAGTAAGCTCTTGAGACTATGGAATTCCACTAAGTAGTC-TAAGGAAATG  49

seq1  GAGGGAGAGAGGGAGGCATCTAGAGGATTTCTTGGAGT-CATGAG-CTGG  97
      |||||||||| |||||||||||||| |||||||||||| |||||| ||||
seq2  GAGGGAGAGA-GGAGGCATCTAGAGAATTTCTTGGAGTCCATGAGACTGG  98

seq1  CCTTCACCTGTGCGCGTTGCCATCACCCTTCTGCAGAAGCT-CGATGAGC  146
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCTTCACCTGTGCGCGTTGCCATCACCCTTCTGCAGAAGCTCCGATGAGC  148

seq1  TCGGGCACCGTGTGGGCGG-GGTCTCTGGGGCTC-ATCAAGTACAAGAGG  194
      ||| ||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TCGAGCACCGTGTGGGCGGAGGTCTCTGGGGCTCAATCAAGTACAAGAGG  198

seq1  ACTTTCC-TTCCGTATTTGTCATTAACTATGCTGGGCAAGGAACTGATGA  243
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTTTCCGTATTTGTCATTAACTATGCTGGGCAAGGAACTGATGA  248

seq1  TTTCCTAGATAATGG-AAACAAAAACGTCCACTGTTTATTATATTCCCAG  292
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTCCTAGATAATGGAAAACAAAAACGTCCACTGTTTATTATATTCCCAG  298

seq1  AGTTCCGCTGAGATTTGATGGGGATGAAGAACACACCCTGGGTATTTTCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCGCTGAGATTTGATGGGGATGAAGAACACACCCTGGGTATTTTCC  348

seq1  TCACTCCACTCACATCACTTGTGACGTCAATTCTGACATGTCTTATCAAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCACTCACATCACTTGTGACGTCAATTCTGACATGTCTTATCAAA  398

seq1  GCACAAAGAATTACTTTCAGAACTGTTCATTCTCTGCTGTGGTGGCCATT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGAATTACTTTCAGAACTGTTCATTCTCTGCTGTGGTGGCCATT  448

seq1  ATTGAACAATCTGTTTGAACTAACTGATCAAACCCAAGGACTTTTTAAAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAATCTGTTTGAACTAACTGATCAAACCCAAGGACTTTTTAAAG  498

seq1  TTAGAAGAGCTACCTCCACTCATTGTGAGTATGGGTCAGGCCGCTATTAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGCTACCTCCACTCATTGTGAGTATGGGTCAGGCCGCTATTAC  548

seq1  TAAGGACAGCACCTACTGCGATCTGAGTGGACAGTCAATCTGCAGGAGAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACAGCACCTACTGCGATCTGAGTGGACAGTCAATCTGCAGGAGAC  598

seq1  TTAATGTAGCATGAGCCTTGATGAAGCACGGACCTCAGAACCTCCCTGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGTAGCATGAGCCTTGATGAAGCACGGACCTCAGAACCTCCCTGCT  648

seq1  GAGCCAGGAGACAGGAAGCTGCTCTGCTAATCACAAAGAGTATGAAGGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGGAGACAGGAAGCTGCTCTGCTAATCACAAAGAGTATGAAGGCT  698

seq1  TAGCTAGGTTGCTTATTCATAGCAAAAGAAGGCTGTTTACTGCAGTAAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGGTTGCTTATTCATAGCAAAAGAAGGCTGTTTACTGCAGTAAAA  748

seq1  AATACACACAGGGAGATGAGAAAATAATCTAGCAAGAAGATGCCCACCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACACAGGGAGATGAGAAAATAATCTAGCAAGAAGATGCCCACCAT  798

seq1  CCTGAATTGACATCAGCATTGCCAGTAGTTAGAACTAAAGTGATACTGCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTGACATCAGCATTGCCAGTAGTTAGAACTAAAGTGATACTGCT  848

seq1  CCCCACTCCCCCCCCCAAATGCCTAAGGAAATCATCACAGAAAGTCACTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTCCCCCCCCCAAATGCCTAAGGAAATCATCACAGAAAGTCACTG  898

seq1  AATTC  897
      |||||
seq2  AATTC  903

seq1: chr19_27356679_27357419
seq2: B6Ng01-224O10.g_70_812

seq1  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATAGCGACACACTATTGGCTTATTCAAACATCAGCAGAAAA  50

seq1  ATTATATGTACGTGCAGATCAAGGTGTCAGCAGCAAAAAAATACGTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTACGTGCAGATCAAGGTGTCAGCAGCAAAAAAATACGTGCAG  100

seq1  GAATTCTGTGAGTTGGATGTTTATCAATGCTCGCAGAGTATCTGGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGAGTTGGATGTTTATCAATGCTCGCAGAGTATCTGGTCAGT  150

seq1  TTGACTCAGTTCAGATAGCCCTGTTATGTCCTCACATTCTTCTTTATCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCAGTTCAGATAGCCCTGTTATGTCCTCACATTCTTCTTTATCTT  200

seq1  TATGGTCAAGCTGTTCCCAGGAATGTTTTAACTACAGGGCGTGCCCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTCAAGCTGTTCCCAGGAATGTTTTAACTACAGGGCGTGCCCAGGT  250

seq1  TTGTTTTTCTTTTTTTCTCAGCCCCAGGAAACCTCTAGGCTCACAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTTTTTTCTCAGCCCCAGGAAACCTCTAGGCTCACAAACAA  300

seq1  CCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATTTCTGAGTACTTTATATGACTTACAGGTCTTGAAATTTCATC  350

seq1  TTTCTTTCAGATCTGGATATGTTGGGAAGTTCTAGGAGGAGCAGTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCAGATCTGGATATGTTGGGAAGTTCTAGGAGGAGCAGTTGAGA  400

seq1  AACCTTAATCAAAATATACTGTACGAAAAAAATCTATTTTCACTAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTAATCAAAATATACTGTACGAAAAAAATCTATTTTCACTAAAAGA  450

seq1  GAGAGGAGACATTAAAATGATTCTATAGTTACAATAAAAGCATGGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGACATTAAAATGATTCTATAGTTACAATAAAAGCATGGATATA  500

seq1  AGGTAAAACAGCACATCACAAAGTAAAATTACACAGTGCAGTATGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAACAGCACATCACAAAGTAAAATTACACAGTGCAGTATGATTAA  550

seq1  AATAGCTTTAAAATGTACATATAAAAGCTGGAACACATAGCTGGGATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTTAAAATGTACATATAAAAGCTGGAACACATAGCTGGGATAAC  600

seq1  AGTAGTATAGAGTATGATAGGGATCATTTCTACTATGCTGCAGTGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTATAGAGTATGATAGGGATCATTTCTACTATGCTGCAGTGATGAT  650

seq1  TGCTTTTTAAGTAAGAGTTCCTGTGAAATTAAGGAGG--TTTTTTTTTTC  698
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TGCTTTTTAAGTAAGAGTTCCTGTGAAATTAAGGAGGTTTTTTTTTTTTC  700

seq1  TTTTTGTGGAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  741
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGAGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  743