BAC Information

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BAC

Clone NameB6Ng01-224O17
Chromosome19 (Build37)
Map Location 54,243,300 - 54,360,006
singlet/doubletdoublet
Overlap genenone
Upstream geneAdd3, 1700001K23Rik, Mxi1, Smndc1, Dusp5, LOC100043462, Smc3, Rbm20, LOC100042979, Pdcd4, 2310002J21Rik, Shoc2, Adra2a
Downstream geneLOC100043004, Gpam, Tectb, Gucy2g, Acsl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224O17.bB6Ng01-224O17.g
ACCGA039247GA039248
length514988
definitionB6Ng01-224O17.b B6Ng01-224O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,243,300 - 54,243,811)(54,359,035 - 54,360,006)
sequence
gattcacctactctggcagagacttgatacaccagggtgggggaggccca
gggggacacaccctctcagagaagaaaaggatggtggatggggagggtgt
ttgtgagggggcactgggagtgagggcagcatttgcgatgtaaatgaata
aaaaagtattttaaaacaaggtagagagtgattaagggcttctaacctcc
acatgaatgcacatacatgagcacacacacatatatacacacattacaaa
caaatacatacatataccacacacataagtgcacatgacagtttgcaaaa
gaccctacaatcttatattatgacatttgcctttcagtggtaattcatac
tctggctttgaaagtttctctcaggaggagtggtgtggcccatcgtggag
acacagtgactgcactttgagatgccattttggcacggagcacaaatctg
agctcttcttgaaccttccatggttacagagtttcctgctaccccttcag
ccctttgtgaatag
gaattcagtgaccaggtttgctttccaccttactgaattaaacccctgag
cctcacaatatttgtatttgacagattttgctagttgtaaagagtctgaa
atcattctagtaagttttcaaacttagccctagcttggtggtgacataca
gctttcaataaggccattcattggtagttgaattagtgactgccatgtcc
cagtagagattagctggaaaactcagtatgttcacatttaccaggtgttt
taaactgtggagactatgggaacactatgtagaaaggggtcatacgtatt
ttctggaatagctccaagttaaacttttcattttgttccaggcaatgata
aaacaattcataaaaattccatttctattccataactattgaaagagcag
aagcaaatttggccaacagtgttttatgtttaacaacaagacaaaattca
ttccaaacttaacatcacaaagtttgatgcatttcctcattcaaggaaac
tacaaggtcctttgcctctaaattcaatgccaatgatcaacaagcttgag
agaaggaatacggcttaaaatgagaaagcaaaaggcatggctaatggaat
gctgactatacgatgctgacaccatcagagattactttaacctgctaaaa
agaaacattcactaatgtctccctctgtactctctcttttctataagctt
tatgatccctcctgttcccatccccacccacaaaatcttatttcaatttt
ccccttcccaaggagattcatgcatgccccatagaccctccctcttcatc
taacctgaagtctaagcccaagagagggaacccatgtgcagagatgtgca
gagatttgatggccaggaaactagaagctgggacggctcagaagaccctg
gagtagaatcaaacatgactgacaataatttaataatataattaatatat
tataattattaattgaggagtgagggagggaggagggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_54243300_54243811
seq2: B6Ng01-224O17.b_50_562

seq1  ATTCACCTACTCTGGCAGAGACTTGATACACCAGGGTGGGGGAGGCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTACTCTGGCAGAGACTTGATACACCAGGGTGGGGGAGGCCCAG  50

seq1  GGGGACACACCCTCTCAGAGAAGAAAAGGATGGTGGATGGGGAGGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACACACCCTCTCAGAGAAGAAAAGGATGGTGGATGGGGAGGGTGTT  100

seq1  TGTGAGGGGGCACTGGGAGTGAGGGCAGCATTTGCGATGTAAATGAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGGGCACTGGGAGTGAGGGCAGCATTTGCGATGTAAATGAATAA  150

seq1  AAAAGTATTTTAAAACAAGGTAGAGAGTGATTAAGGGCTTCTAACCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATTTTAAAACAAGGTAGAGAGTGATTAAGGGCTTCTAACCTCCA  200

seq1  CATGAATGCACATACATGAGCACACACACATATATACACACATTACAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGCACATACATGAGCACACACACATATATACACACATTACAAAC  250

seq1  AAATACATACATATACCACACACATAAGTGCACATGACAGTTTGCAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATACATATACCACACACATAAGTGCACATGACAGTTTGCAAAAG  300

seq1  ACCCTACAATCTTATATTATGACATTTGCCTTTCAGTGGTAATTCATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACAATCTTATATTATGACATTTGCCTTTCAGTGGTAATTCATACT  350

seq1  CTGGCTTTGAAAGTTTCTCTCAGGAGGAGTGGTGTGGCCCATCGTGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTGAAAGTTTCTCTCAGGAGGAGTGGTGTGGCCCATCGTGGAGA  400

seq1  CACAGTGACTGCACTTTGAGATGCCA-TTTGGCACGGAGCACAAATCTGA  449
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACAGTGACTGCACTTTGAGATGCCATTTTGGCACGGAGCACAAATCTGA  450

seq1  GCTCTTCTTGAACCTTCCATGGCTACAGAGTTTCCTGCTACCCCTTCAGC  499
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTCTTCTTGAACCTTCCATGGTTACAGAGTTTCCTGCTACCCCTTCAGC  500

seq1  CCTTTGTGAATAG  512
      |||||||||||||
seq2  CCTTTGTGAATAG  513

seq1: chr19_54359035_54360006
seq2: B6Ng01-224O17.g_73_1060 (reverse)

seq1  ACCCTCCTCC--TCCTC-CTCCTCA--TTATTATTATTAT-TATTATTAT  44
      ||||||||||   |||| |||||||  | || ||||| || ||||| |  
seq2  ACCCTCCTCCCTCCCTCACTCCTCAATTAATAATTATAATATATTAATTA  50

seq1  TATTATT-AATTATTGTCAGTCATGTTTGATTCTACTCCA-GGTC-TCTG  91
      ||||||| |||||||||||||||||||||||||||||||| |||| ||||
seq2  TATTATTAAATTATTGTCAGTCATGTTTGATTCTACTCCAGGGTCTTCTG  100

seq1  AGCCGT-CCAGCTTCTAG-TTCCTGGCCATC-AATCTCTGCACATCTCTG  138
      |||||| ||||||||||| |||||||||||| ||||||||||||||||||
seq2  AGCCGTCCCAGCTTCTAGTTTCCTGGCCATCAAATCTCTGCACATCTCTG  150

seq1  CACATGGGTTCCCTCTCTTGGGCTTAGACTTCAGGTTAGATGAAGAGGGA  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTTCCCTCTCTTGGGCTTAGACTTCAGGTTAGATGAAGAGGGA  200

seq1  GGGTCTATGGGGCATGCATGAATCTCCTTGGGAAGGGG-AAATTGAA--T  235
      |||||||||||||||||||||||||||||||||||||| ||||||||   
seq2  GGGTCTATGGGGCATGCATGAATCTCCTTGGGAAGGGGAAAATTGAAATA  250

seq1  AGATTTTGTGGGTGGGGATGGGAACAGGAGGGATCATAAAGCTTATAG-A  284
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGATTTTGTGGGTGGGGATGGGAACAGGAGGGATCATAAAGCTTATAGAA  300

seq1  AAGAGAGAGTACAGAGGGAGACATTAGTGAATGTTTCTTTTTAGCAGGTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAGTACAGAGGGAGACATTAGTGAATGTTTCTTTTTAGCAGGTT  350

seq1  AAAGTAATCTCTGATGGTGTCAGCATCGTATAGTCAGCATTCCATTAGCC  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATCTCTGATGGTGTCAGCATCGTATAGTCAGCATTCCATTAGCC  400

seq1  ATGCCTTTTGCTTTCTCATTTTAAGCCGTATTCCTTCTCTCAAGCTTGTT  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTGCTTTCTCATTTTAAGCCGTATTCCTTCTCTCAAGCTTGTT  450

seq1  GATCATTGGCATTGAATTTAGAGGCAAAGGACCTTGTAGTTTCCTTGAAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGGCATTGAATTTAGAGGCAAAGGACCTTGTAGTTTCCTTGAAT  500

seq1  GAGGAAATGCATCAAACTTTGTGATGTTAAGTTTGGAATGAATTTTGTCT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAATGCATCAAACTTTGTGATGTTAAGTTTGGAATGAATTTTGTCT  550

seq1  TGTTGTTAAACATAAAACACTGTTGGCCAAATTTGCTTCTGCTCTTTCAA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTAAACATAAAACACTGTTGGCCAAATTTGCTTCTGCTCTTTCAA  600

seq1  TAGTTATGGAATAGAAATGGAATTTTTATGAATTGTTTTATCATTGCCTG  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGGAATAGAAATGGAATTTTTATGAATTGTTTTATCATTGCCTG  650

seq1  GAACAAAATGAAAAGTTTAACTTGGAGCTATTCCAGAAAATACGTATGAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAAATGAAAAGTTTAACTTGGAGCTATTCCAGAAAATACGTATGAC  700

seq1  CCCTTTCTACATAGTGTTCCCATAGTCTCCACAGTTTAAAACACCTGGTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTACATAGTGTTCCCATAGTCTCCACAGTTTAAAACACCTGGTA  750

seq1  AATGTGAACATACTGAGTTTTCCAGCTAATCTCTACTGGGACATGGCAGT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACATACTGAGTTTTCCAGCTAATCTCTACTGGGACATGGCAGT  800

seq1  CACTAATTCAACTACCAATGAATGGCCTTATTGAAAGCTGTATGTCACCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATTCAACTACCAATGAATGGCCTTATTGAAAGCTGTATGTCACCA  850

seq1  CCAAGCTAGGGCTAAGTTTGAAAACTTACTAGAATGATTTCAGACTCTTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTAGGGCTAAGTTTGAAAACTTACTAGAATGATTTCAGACTCTTT  900

seq1  ACAACTAGCAAAATCTGTCAAATACAAATATTGTGAGGCTCAGGGGTTTA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGCAAAATCTGTCAAATACAAATATTGTGAGGCTCAGGGGTTTA  950

seq1  ATTCAGTAAGGTGGAAAGCAAACCTGGTCACTGAATTC  972
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAGGTGGAAAGCAAACCTGGTCACTGAATTC  988