BAC Information

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BAC

Clone NameB6Ng01-225C21
Chromosome11 (Build37)19 (Build37)
Map Location 60,509,411 - 60,509,68027,222,423 - 27,223,423
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAA536749, 4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206
Downstream geneLlgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225C21.bB6Ng01-225C21.g
ACCGA039439GA039440
length6241,004
definitionB6Ng01-225C21.b B6Ng01-225C21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,509,411 - 60,509,680)(27,222,423 - 27,223,423)
sequence
gaattcaaccaactagtacactgggtgttgagagtgaacaatatgtggat
taactctgaaaggtgtgtgggctgcagtgagagatatgcaccagtccaga
gagttgtgtgtgctgcagtgacagagatgtaggttaacatggagaggtgt
gtggactacagtgacagagatgagggttaaccctgaaaggtgttcgagct
gcagtgacagatgtgggttaaccctgctaggtgggtgggctgcagtgaca
gatgagggttaaccctgacaggtgtgtgggccgcagagacagatgagggt
tgtagtggctatttctggttctcaatttgactatatctggaatgaactac
aatccagaattggaaggctcaccagtgatcctaatctggagtctgggaga
tagaagtttctgacctggatcttggcatggagatcttgtggcaaagtggc
tatgaattccagaagattaagacagggaggtctccgagatcaaggtcatc
tgggattaaaggtgtggtaacacacacctttaatctgggctacaccttct
gctggagaccatataaggacaatggaagtagggagtgtctctctctctct
ctctctctctctctctctctctct
gaattcctgacttgtttacaaggttttgggtttcttgtttatttcagtgc
tgaaggacaacctagggccttgggtgtgttgggcaagctccctatcacct
aacaagaacaatcaatctctcgtcaagttcatagtttttaaaacatttct
gatcattatttttctgccaagtataattcccttcattgaagtgggaaatc
tggatgtttgatataatggaggattttttggcacaaatatggaaaagcaa
cttgaatccatcttaacactaagggaatgtattatgagagtataaaggtg
tcttgcagacactgtagaaggacagccagagcgggtcggaatgcctctgg
attctcaccccagttttgcctgctcttccctgtgtggtgatgtctgcttt
tcagctttggaaggttggcttcccctactcttcactcccaggctggttag
aaagagctgctgtcttctaatgtgatctgggctcagccacatagactggc
tctcaatttctcagtcttaagaagcgaatgtaacccggatacaggacggt
tcacctctagtcagttaagtgtgagcgggggtgggtgggtgcaggagttc
aaggaaggactagcaaacaccaagttggagtttccagagaaaggagaatt
gttaggaacttggcaaagagcccacatggagaaggagagaaacaatcact
cctttgcttcagtgagctcgtgttaagaaacaaccatgttccagagcagg
gccaggctcataaatatgaaacatagaaaaaataaaaaagccctctacct
ttcaggggctggagagatagatgctcagtagcttaagagcagttgttcct
tcttccagtgggcctggctttagttcccagtacctacatcaggtggttca
caatgagcgatgtaaaaaaccctgtgacctccaggttgaaggggattaaa
tacctcttctgacctcaggcacaacaagtgtgccacccgcacaccacata
caca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_60509411_60509680
seq2: B6Ng01-225C21.b_347_616 (reverse)

seq1  TCCTTATATGGCCTCCAGCAGAAGGTGTAGCCCAGCTTATAGGTGTGTGC  50
      ||||||||||| ||||||||||||||||||||||| ||| ||||||||| 
seq2  TCCTTATATGGTCTCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTGT  50

seq1  CACCACACCTTTAATCCCAGATGACCTTGAACTCGGAGCTCTCACTGTCT  100
       ||||||||||||||||||||||||||||| |||||||  ||| ||||||
seq2  TACCACACCTTTAATCCCAGATGACCTTGATCTCGGAGACCTCCCTGTCT  100

seq1  TAATCTTCTGGAATTCATAGCCACTCTGCCTCAAGATCTCCATACCAAGA  150
      ||||||||||||||||||||||||| |||| |||||||||||| ||||||
seq2  TAATCTTCTGGAATTCATAGCCACTTTGCCACAAGATCTCCATGCCAAGA  150

seq1  TCCGGGTCAGAAACTTCTCTCTCCCAGCCTCCAGATTTGAATCACTGGGG  200
      ||| |||||||||||||| |||||||| ||||||||| | |||||||| |
seq2  TCCAGGTCAGAAACTTCTATCTCCCAGACTCCAGATTAGGATCACTGGTG  200

seq1  AGCCTTCCAATTCTGGATTGTAGTTCATTCCAGATACAGTCAAGTTGACA  250
      |||||||||||||||||||||||||||||||||||| |||||| |||| |
seq2  AGCCTTCCAATTCTGGATTGTAGTTCATTCCAGATATAGTCAAATTGAGA  250

seq1  ACCAGGAATAGCCACTACAA  270
      ||||| ||||||||||||||
seq2  ACCAGAAATAGCCACTACAA  270

seq1: chr19_27222423_27223423
seq2: B6Ng01-225C21.g_64_1067

seq1  GAATTCCTGACTTGTTTACAAGGTTTTGGGTTTCTTGTTTATTTCAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGACTTGTTTACAAGGTTTTGGGTTTCTTGTTTATTTCAGTGC  50

seq1  TGAAGGACAACCTAGGGCCTTGGGTGTGTTGGGCAAGCTCCCTATCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACAACCTAGGGCCTTGGGTGTGTTGGGCAAGCTCCCTATCACCT  100

seq1  AACAAGAACAATCAATCTCTCGTCAAGTTCATAGTTTTTAAAACATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAACAATCAATCTCTCGTCAAGTTCATAGTTTTTAAAACATTTCT  150

seq1  GATCATTATTTTTCTGCCAAGTATAATTCCCTTCATTGAAGTGGGAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTATTTTTCTGCCAAGTATAATTCCCTTCATTGAAGTGGGAAATC  200

seq1  TGGATGTTTGATATAATGGAGGATTTTTTGGCACAAATATGGAAAAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTTTGATATAATGGAGGATTTTTTGGCACAAATATGGAAAAGCAA  250

seq1  CTTGAATCCATCTTAACACTAAGGGAATGTATTATGAGAGTATAAAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCCATCTTAACACTAAGGGAATGTATTATGAGAGTATAAAGGTG  300

seq1  TCTTGCAGACACTGTAGAAGGACAGCCAGAGCGGGTCGGAATGCCTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCAGACACTGTAGAAGGACAGCCAGAGCGGGTCGGAATGCCTCTGG  350

seq1  ATTCTCACCCCAGTTTTGCCTGCTCTTCCCTGTGTGGTGATGTCTGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCACCCCAGTTTTGCCTGCTCTTCCCTGTGTGGTGATGTCTGCTTT  400

seq1  TCAGCTTTGGAAGGTTGGCTTCCCCTACTCTTCACTCCCAGGCTGGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTGGAAGGTTGGCTTCCCCTACTCTTCACTCCCAGGCTGGTTAG  450

seq1  AAAGAGCTGCTGTCTTCTAATGTGATCTGGGCTCAGCCACATAGACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCTGCTGTCTTCTAATGTGATCTGGGCTCAGCCACATAGACTGGC  500

seq1  TCTCAATTTCTCAGTCTTAAGAAGCGAATGTAACCCGGATACAGGACGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTCTCAGTCTTAAGAAGCGAATGTAACCCGGATACAGGACGGT  550

seq1  TCACCTCTAGTCAGTTAAGTGTGAGCGGGGGTGGGTGGGTGCAGGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTAGTCAGTTAAGTGTGAGCGGGGGTGGGTGGGTGCAGGAGTTC  600

seq1  AAGGAAGGACTAGCAAACACCAAGTTGGAGTTTCCAGAGAAAGGAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGACTAGCAAACACCAAGTTGGAGTTTCCAGAGAAAGGAGAATT  650

seq1  GTTAGGAACTTGGCAAAGAGCCCACATGGAGAAGGAGAGAAACAATCACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGAACTTGGCAAAGAGCCCACATGGAGAAGGAGAGAAACAATCACT  700

seq1  CCTTTGCTTCAGTGAGCTCGTGTTAAGAAACAACCATGTTCCAGAGCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTCAGTGAGCTCGTGTTAAGAAACAACCATGTTCCAGAGCAGG  750

seq1  GCCAGGCTCATAAATATGAAACATAGAAAAAATAAAAAAGCCCTCTACC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCCAGGCTCATAAATATGAAACATAGAAAAAATAAAAAAGCCCTCTACCT  800

seq1  TTCAGGGGCTGGAGAGATAGATGCTCAGTAGC-TAAGAGCAGTTGTTCC-  847
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  TTCAGGGGCTGGAGAGATAGATGCTCAGTAGCTTAAGAGCAGTTGTTCCT  850

seq1  TCTTCCAGTGGGCCTGGCTTTAGTTCCCAGTACCTACATCAGGTGGTTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGTGGGCCTGGCTTTAGTTCCCAGTACCTACATCAGGTGGTTCA  900

seq1  CAATGAGCGATGTAAAAAACCCTGTGA-CTCCAGGTTG-AGGGGATTAAA  945
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CAATGAGCGATGTAAAAAACCCTGTGACCTCCAGGTTGAAGGGGATTAAA  950

seq1  TACCTCTTCTGACCTCAGGCACCAACAAGTGTGCCACACGCACACACACA  995
      ||||||||||||||||||||| ||||||||||||||| ||||||| ||||
seq2  TACCTCTTCTGACCTCAGGCA-CAACAAGTGTGCCACCCGCACAC-CACA  998

seq1  TACACA  1001
      ||||||
seq2  TACACA  1004