BAC Information

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BAC

Clone NameB6Ng01-225J19
Chromosome19 (Build37)
Map Location 9,061,890 - 9,152,212
singlet/doubletdoublet
Overlap geneAhnak
Upstream gene9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g
Downstream geneScgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-225J19.bB6Ng01-225J19.g
ACCGA039761GA039762
length324418
definitionB6Ng01-225J19.b B6Ng01-225J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,061,890 - 9,062,213)(9,151,789 - 9,152,212)
sequence
cagaacagcctgggttacactgtaagaccctggttcagtaaatcaggact
gtgggctaggggatgacttgttcaggtagttgccaccaaacctcatgacc
tctttgatcccagtggaaagagagaagagaccctcacaagtcccatggcc
tccacatgatcatgcacactaagtaaaaggaaaaaaaaaacatgactggc
tcttgagttttattttttgaaatgtgttttggcctgatcctcacttggta
tctctgggtggcctggaacttactgagttcaccgtagggagtgtgctggg
aagggagtagatttggaggggggg
agacgcagcgcagacagctaggtataagcaaaattccagagagcttggca
tgcatcaagccctgtgggcccaccttcctctttctaatgaagatgaaatc
aggtcacggagccaggttcttcctaaactacaaatcgttctgaaatgtat
tcattacatgcctggtaagttttgagccttgattatttttttctttgtgg
atgtatgttaaatattaaccagatattttttttaaagatccttgaatgcc
tgccatcagtgtacagaatttcagactgtactccagggcaccaccagtgt
caggatgggttggtctagagcaacataatgactgatggctgaagttctat
tctacctgcttcagattagtcaggagaaagagaagggagtgagggagaga
gagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_9061890_9062213
seq2: B6Ng01-225J19.b_52_375

seq1  CAGAACAGCCTGGGTTACACTGTAAGACCCTGGTTCAGTAAATCAGGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCCTGGGTTACACTGTAAGACCCTGGTTCAGTAAATCAGGACT  50

seq1  GTGGGCTAGGGGATGACTTGTTCAGGTAGTTGCCACCAAACCTCATGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTAGGGGATGACTTGTTCAGGTAGTTGCCACCAAACCTCATGACC  100

seq1  TCTTTGATCCCAGTGGAAAGAGAGAAGAGACCCTCACAAGTCCCATGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATCCCAGTGGAAAGAGAGAAGAGACCCTCACAAGTCCCATGGCC  150

seq1  TCCACATGATCATGCACACTAAGTAAAAGGAAAAAAAAAACATGACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGATCATGCACACTAAGTAAAAGGAAAAAAAAAACATGACTGGC  200

seq1  TCTTGAGTTTTATTTTTTGAAATGTGTTTTGGCCTGATCCTCACTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTTTATTTTTTGAAATGTGTTTTGGCCTGATCCTCACTTGGTA  250

seq1  TCTCTGGGTGGCCTGGAACTTACTGAGTTCACCGTAGGGAGTGTGCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGTGGCCTGGAACTTACTGAGTTCACCGTAGGGAGTGTGCTGGG  300

seq1  AAGGGAGTAGATTTGGAGGGGGGG  324
      ||||||||||||||||||||||||
seq2  AAGGGAGTAGATTTGGAGGGGGGG  324

seq1: chr19_9151789_9152212
seq2: B6Ng01-225J19.g_65_488 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCCCTCACTCCCTTCTCTTTCTCCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCCCTCACTCCCTTCTCTTTCTCCTGAC  50

seq1  TAATCTGAAGCAGGTAGAATAGAACTTCAGCCATCAGTCATTATGTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGAAGCAGGTAGAATAGAACTTCAGCCATCAGTCATTATGTTGCT  100

seq1  CTAGACCAACCCATCCTGACACTGGTGGTGCCCTGGAGTACAGTCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCAACCCATCCTGACACTGGTGGTGCCCTGGAGTACAGTCTGAAA  150

seq1  TTCTGTACACTGATGGCAGGCATTCAAGGATCTTTAAAAAAAATATCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACACTGATGGCAGGCATTCAAGGATCTTTAAAAAAAATATCTGG  200

seq1  TTAATATTTAACATACATCCACAAAGAAAAAAATAATCAAGGCTCAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTTAACATACATCCACAAAGAAAAAAATAATCAAGGCTCAAAAC  250

seq1  TTACCAGGCATGTAATGAATACATTTCAGAACGATTTGTAGTTTAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGGCATGTAATGAATACATTTCAGAACGATTTGTAGTTTAGGAAG  300

seq1  AACCTGGCTCCGTGACCTGATTTCATCTTCATTAGAAAGAGGAAGGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGCTCCGTGACCTGATTTCATCTTCATTAGAAAGAGGAAGGTGGG  350

seq1  CCCACAGGGCTTGATGCATGCCAAGCTCTCTGGAATTTTGCTTATACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGGCTTGATGCATGCCAAGCTCTCTGGAATTTTGCTTATACCTA  400

seq1  GCTGTCTGCGCTGCGTCTGAATTC  424
      ||||||||||||||||||||||||
seq2  GCTGTCTGCGCTGCGTCTGAATTC  424