BAC Information

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BAC

Clone NameB6Ng01-226I08
Chromosome19 (Build37)
Map Location 6,193,349 - 6,194,503
singlet/doubletsinglet
Overlap genenone
Upstream genePacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2
Downstream geneLOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372, Rps6ka4, Ccdc88, Prdx5, 0610038D11Rik, Esrra, 1700019N12Rik, Kcnk4, Gpr137, Bad, Plcb3, Ppp1r14b, Fkbp2, Vegfb, Dnajc4, Nudt22, Trpt1, BC032204, Stip1, D930010J01Rik, Flrt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-226I08.bB6Ng01-226I08.g
ACCGA040441GA040442
length1,2111,133
definitionB6Ng01-226I08.b B6Ng01-226I08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgagatcatctatgggaaaaagtaattataaagttggatttga
tgacaagccactgttttaattccagcactccacagacagaattcaaggcc
agcctgatgtatgtaacaagttccaggccagcaagagttacatgatgaga
ccctacccagtgattgtaagaattccaaaattcaggataacaatgctgta
agtcttacataatattctaatccacccatatctatccctgggtttaggtc
aagagacttcatgtaccttctcattggaaacagtgtcagatgaaggacag
tgctgtcttccttttaccatgtgcagcagtgatggctgctgggtttacag
tggagcaccaactctgcagcacagcaggaaatgaaacaatcatcctgccg
agtcaggacagaatgacgccctggtagggacagaatgacaccttggtagg
gacagaatggcatggctctggccctgggacagggccagcaggtatgggct
taagacttgtttgtataataatgtacatatttttacatttctctgaggaa
tgtcctccctgctaacaacattaataactccatgataaccagagacagca
tgagtctgggaggtctcagcatattggtaaaagctgggacctttaggaca
gcccttaaggctgtggaaaagaactctaaaaacatgagtttgaaaatata
taatttctcaactatgcaaaaatacaaggatgtaatatgaattgcataag
gggcttcacagatctaaaggaacagaggcagctgaactgtgagacagctt
gtgaggaagacactaaggaaataaagagtggtgatcgaaagctgagatca
cactcagctaagtttgggttttgttttgttttctgtttaggcttacaaat
acacgcagtttcctgagctcagggtcagcctgggacagagatagtttagg
tccaggtgtggtcagaatggcactctcaggttagattactctcaaggtaa
agctagaattacaaaggcaggccgatctctgaattcttttgcatgtttaa
aaaaaaaagtactgtatctttcctagatcaaagagccctggtataggatg
cttgtcatagatatctagaattaagaactgatgtgtaaataaaaactgga
tttggcttgcatgaccaagcctagcgaagtggcatcaggtccttctttag
agagagtttct
gaattcactgtcttgaggcaattagactttgagatatagaatttagtatt
aaaatacatagcaacaaaccaaacctcatcaccagctatttagaaggttg
aggcaggaagatcccctgagctcagcagctcagctatagtgaagctgtac
tggagacagctacagtgtacttgtataaaaataaataaatcttaaaaaac
aaaacctgccgggcgtggtggcgcacgcctttaatcccagcactcgggag
gcagaggcaggcgaatttctgagttcgaggccagcctggtctacagagtg
agttccaggacagccaaggctataaagagaaaccctgtctcgaaaaaaaa
aaaaaaaaaaaccaaaaaaaaaaacaaaacaaaacctgttttgtgttcag
ggtcaatctgaaccacataggaccctgtgttcaaaaagcaaatcaaccat
tgtcactgtgtagggaaaccattgtcactgtgtagggaaaccattgtcac
tgtgtaggaaaccattgtcactgtgtaggaaaccattgtcactgtgtagg
aaaccattgtcactgtgtaggaaaccattgccactgtgtagggaaaccat
tgtcactgtgtaggaaaccattgtcactgtgtaggaaaccattgtcactg
tgtagggaaaccattgtcactgtgtaggaaaccattgtcactgtgtagga
aaccattgtcactgtgtaggaaaccattgccactgtgtaggaaaccattg
tcactgtgtaggaaaccattgtcactgtgtaggaaaccattgccactgtg
tagggaaaccgaggcgcaggcctacggctgcagaaccgccatgagcttga
aggcagcctcggctacactgttcctagccagccttgcttacaaagtaagg
acttgcctgaatgtttcttattaagaggaaagatggagagaagagaagag
agactgatgtcaaaatccagtagaacattaggctgaccaaatctgtttgt
gttcatacatctcagttgttctaataattcaatgtcaggagttgtataac
actcgttactttggatctgcaaactctagaccctcttattataagtctgg
cacgttaggcaggactgcaatgtgtatggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_6193349_6194503
seq2: B6Ng01-226I08.g_64_1196

seq1  GAATTCACTGTCTTGAGGCAATTAGACTTTGAGATATAGAATTTAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTTGAGGCAATTAGACTTTGAGATATAGAATTTAGTATT  50

seq1  AAAATACATAGCAACAAACCAAACCTCATCACCAGCTATTTAGAAGGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACATAGCAACAAACCAAACCTCATCACCAGCTATTTAGAAGGTTG  100

seq1  AGGCAGGAAGATCCCCTGAGCTCAGCAGCTCAGCTATAGTGAAGCTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGAAGATCCCCTGAGCTCAGCAGCTCAGCTATAGTGAAGCTGTAC  150

seq1  TGGAGACAGCTACAGTGTACTTGTATAAAAATAAATAAATCTTAAAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGCTACAGTGTACTTGTATAAAAATAAATAAATCTTAAAAAAC  200

seq1  AAAACCTGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAG  250

seq1  GCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGAATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  300

seq1  AGTTCCAGGACAGCCAAGGCTATAAAGAGAAACCCTGTCTCGAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAAGGCTATAAAGAGAAACCCTGTCTCGAAAAAAAA  350

seq1  AAAAAAAAAAACCAAAAAAAAAAACAAAACAAAACCTGTTTTGTGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCAAAAAAAAAAACAAAACAAAACCTGTTTTGTGTTCAG  400

seq1  GGTCAATCTGAACCACATAGGACCCTGTGTTCAAAAAGCAAATCAACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATCTGAACCACATAGGACCCTGTGTTCAAAAAGCAAATCAACCAT  450

seq1  TGTCACTGTGTAGGGAAACCATTGTCACTGTGTAGGGAAACCATTGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTGTAGGGAAACCATTGTCACTGTGTAGGGAAACCATTGTCAC  500

seq1  TGTGTAGGAAACCATTGTCACTGTGTAGGAAACCATTGTCACTGTGTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGAAACCATTGTCACTGTGTAGGAAACCATTGTCACTGTGTAGG  550

seq1  AAACCATTGTCACTGTGTAGGAAACCATTGCCACTGTGTAGGGAAACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTGTCACTGTGTAGGAAACCATTGCCACTGTGTAGGGAAACCAT  600

seq1  TGTCACTGTGTAGGAAACCATTGTCACTGTGTAGGAAACCATTGTCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGTGTAGGAAACCATTGTCACTGTGTAGGAAACCATTGTCACTG  650

seq1  TGTAGGGAAACCATTGTCACTGTGTAGGAAACCATTGTCACTGTGTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGAAACCATTGTCACTGTGTAGGAAACCATTGTCACTGTGTAGGA  700

seq1  AACCATTGTCACTGTGTAGGAAACCATTGCCACTGTGTAGGAAACCATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGTCACTGTGTAGGAAACCATTGCCACTGTGTAGGAAACCATTG  750

seq1  TCACTGTGTAGGAAACCATTGTCACTGTGTAGGAAACCATTGCCACTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTGTAGGAAACCATTGTCACTGTGTAGGAAACCATTGCCACTGTG  800

seq1  TAGGGAAACCGAGGCGCAGGCCTACGGCTGCAGAACCGCCATGAGCTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAACCGAGGCGCAGGCCTACGGCTGCAGAACCGCCATGAGCTTGA  850

seq1  AGGCAGCCTCGGCTACACTGTTCCTAGCCAGCCTGGCTTACAAAGTAAGG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGGCAGCCTCGGCTACACTGTTCCTAGCCAGCCTTGCTTACAAAGTAAGG  900

seq1  ACTTGCCTGAAATGTTTCTTATTAAAGAGGAAAAGATGGAGAGAAGAGAA  950
      ||||||||| ||||||||||||| |||||| |||||||||||||||||||
seq2  ACTTGCCTG-AATGTTTCTTATT-AAGAGG-AAAGATGGAGAGAAGAGAA  947

seq1  GAGAGACTGATGTTCAAAAATCCAGTAGGAACATTAGGGCTGACCAAAAT  1000
      |||||||||||||   ||||||||||| |||||||| |||||||||||  
seq2  GAGAGACTGATGT--CAAAATCCAGTA-GAACATTA-GGCTGACCAAA--  991

seq1  TCTGTTTTGTGTTCATTACATCTCAGTTGTTTCTATTAAAATCAATGTCC  1050
      |||| |||||||||| ||||||||||||| ||||| | || ||||||| |
seq2  TCTG-TTTGTGTTCA-TACATCTCAGTTG-TTCTAAT-AATTCAATGT-C  1036

seq1  AGGAGTTGTATACAACTCGGTAACTTTGATCCTTGGAAACTCTAGACCTC  1100
      ||||||||||||  ||||| ||  || ||||  || ||||||||||||  
seq2  AGGAGTTGTATAACACTCGTTACTTTGGATC--TGCAAACTCTAGACC--  1082

seq1  TTTATTATTAAAAGTCCTGCACGTAAAGGCCAAGAGACTGCAATGTTTAT  1150
        | |||||| |||||  ||||||  ||||  || ||||||||||| |||
seq2  -CTCTTATTATAAGTCTGGCACGT-TAGGC--AG-GACTGCAATGTGTAT  1127

seq1  -GATTG  1155
       |||||
seq2  GGATTG  1133