BAC Information

Click to search

BAC

Clone NameB6Ng01-227H13
Chromosome19 (Build37)
Map Location 35,678,669 - 35,679,478
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464, LOC100042292
Downstream geneA830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, Pcgf5, LOC668201, Hectd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227H13.bB6Ng01-227H13.g
ACCGA041133GA041134
length8121,191
definitionB6Ng01-227H13.b B6Ng01-227H13.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattaaaaggatcaggcctggaaaatgaattgtttccaaaaataa
agtctttttggtgaaagtaggtttcaatatctgctttgtagttttctcat
ttgtttataacgagtttctcaaattttacaagctagtgtttattacagat
ttgggattatgcttctgagaaggaagtgtgctttcttcaaatgtcccagg
acctttgttgaggagcactggattttaggactccagggattacttgtaag
aagcagctgtgcctctgagctagccttcctgagaacaagagttctgttgg
atgccttactcaactactctgttctcatgaacattctgaacataaaagag
ttagcacacacattagagatcgtaaatgattctttgcactgtttttcatt
ttcagtaatgtctcaaataatgtcctaaggcttactccacaaaagaggag
taactttgccctactttgtgctgcagagtcttgcccagatcctacctcta
ctctccatgatcatataattagcattcctcaagagctagcccaaatcaag
acccaccaaaatcaatgtcatcaattaatgattcacgatggcaataagca
acaatggcataacaggtcagtctaacactgagtgcttctcagaggcccca
aataagcctattctgtcatctaccaatctcttcatctcagtggaacccac
tttagcaggaatatagaacatgcatgcttccttccaccttttttatcatt
tttttctttctctttctttctccttccttcctttccttccttccttccct
ttccttccatcc
gaattccaggacagccagggctatacagagaaaccctgtctcaaacaaaa
caaaacaacaacaacaacaaagtgtctagatggttgtgctggcagtattt
ttctgttgggggatggtttcgtgcactgtgtattcagatgctgatttcta
tgcccagacatctgtttgtagtccagaagttggagtgatcaaaggtctcc
agtctcaacgttatattagaaaatgttttccgtaatctctgataggttaa
tgaggagctgaccagcctatggctgtgcaggagatgacagaggaggtggg
aaatctgagcccagtgagggagtaccaatggagatcagagaggagagaaa
ggaggagaggaagagaaggtgtagagagactgtgtggcaggatcaggaag
agttgccatgagaacacacatggagctgagcgagccaagggcaagactca
gagcgaaggtaaaagaccacgtgactggaaaataggaagctgtagctggt
tagaatagctcagaacctgcccagcacagtgccaggagccaaaaatacta
ggtctctgtgtcatttattggggagctaaaacaggctagagtgagcatcg
aaacactctgcagttactgaggagcaaagcaggtaaggcaatacccacaa
attactgtcatattttccttcccatgactttcagattacattttcttata
ggattttagccttaattaattaattcataattaattatgtgtgtgtaaaa
gagtttctctgttcttctcaggaaagctgctgccccaccccccttaaaaa
aaagtcttggagatatcagggatacatgcacgtatctaaacttttttaaa
atagatattttctttatttacattttcaaatgttacctcccttacctgat
ttcccccagaaaatcccctattcccttcaacctgctcccaactctcaacc
cccaattcctggtccttgcattccccctaatattggggcaattatatcct
ttcacaggaccccatgcctctctcctcaatgatgatggactagtcatcct
ctgctacataaatcagctagagctacagttccatcatggttcttttttga
ttgttgatttagtcctaggactctgggggttaccgtagtcaattggagtt
catcgtatgggtcttcaacctcctatcagcatctcttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_35678669_35679478
seq2: B6Ng01-227H13.b_41_852

seq1  GAATTCATTAAAAGGATCAGGCCTGGAAAATGAATTGTTTCCAAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAAGGATCAGGCCTGGAAAATGAATTGTTTCCAAAAATAA  50

seq1  AGTCTTTTTGGTGAAAGTAGGTTTCAATATCTGCTTTGTAGTTTTCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTTGGTGAAAGTAGGTTTCAATATCTGCTTTGTAGTTTTCTCAT  100

seq1  TTGTTTATAACGAGTTTCTCAAATTTTACAAGCTAGTGTTTATTACAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATAACGAGTTTCTCAAATTTTACAAGCTAGTGTTTATTACAGAT  150

seq1  TTGGGATTATGCTTCTGAGAAGGAAGTGTGCTTTCTTCAAATGTCCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTATGCTTCTGAGAAGGAAGTGTGCTTTCTTCAAATGTCCCAGG  200

seq1  ACCTTTGTTGAGGAGCACTGGATTTTAGGACTCCAGGGATTACTTGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGTTGAGGAGCACTGGATTTTAGGACTCCAGGGATTACTTGTAAG  250

seq1  AAGCAGCTGTGCCTCTGAGCTAGCCTTCCTGAGAACAAGAGTTCTGTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGTGCCTCTGAGCTAGCCTTCCTGAGAACAAGAGTTCTGTTGG  300

seq1  ATGCCTTACTCAACTACTCTGTTCTCATGAACATTCTGAACATAAAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTACTCAACTACTCTGTTCTCATGAACATTCTGAACATAAAAGAG  350

seq1  TTAGCACACACATTAGAGATCGTAAATGATTCTTTGCACTGTTTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACACACATTAGAGATCGTAAATGATTCTTTGCACTGTTTTTCATT  400

seq1  TTCAGTAATGTCTCAAATAATGTCCTAAGGCTTACTCCACAAAAGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAATGTCTCAAATAATGTCCTAAGGCTTACTCCACAAAAGAGGAG  450

seq1  TAACTTTGCCCTACTTTGTGCTGCAGAGTCTTGCCCAGATCCTACCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGCCCTACTTTGTGCTGCAGAGTCTTGCCCAGATCCTACCTCTA  500

seq1  CTCTCCATGATCATATAATTAGCATTCCTCAAGAGCTAGCCCAAATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCATGATCATATAATTAGCATTCCTCAAGAGCTAGCCCAAATCAAG  550

seq1  ACCCACCAAAATCAATGTCATCAATTAATGATTCACGATGGCAATAAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAAAATCAATGTCATCAATTAATGATTCACGATGGCAATAAGCA  600

seq1  ACAATGGCATAACAGGTCAGTCTAACACTGAGTGCTTCTCAGAGGCCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGGCATAACAGGTCAGTCTAACACTGAGTGCTTCTCAGAGGCCCCA  650

seq1  AATAAGCCTATTCTGTCATCTACCAATCTCTTCATCTCAGTGGAACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCCTATTCTGTCATCTACCAATCTCTTCATCTCAGTGGAACCCAC  700

seq1  TTTAGCAGGAATATAGAACATGCATGCTTCCTTCCACCTTTTTTATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGGAATATAGAACATGCATGCTTCCTTCCACCTTTTTTATCATT  750

seq1  TTTTTCTTTCTCTTTCTTTCTCCTTCCTTCCTTTCCTTCCTTCCTTCC--  798
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TTTTTCTTTCTCTTTCTTTCTCCTTCCTTCCTTTCCTTCCTTCCTTCCCT  800

seq1  TTCCTTCCTTCC  810
      |||||||| |||
seq2  TTCCTTCCATCC  812