BAC Information

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BAC

Clone NameB6Ng01-227I14
Chromosome19 (Build37)
Map Location 45,680,411 - 45,868,514
singlet/doubletdoublet
Overlap geneFbxw4, Fgf8, Npm3, Mgea5, E330018D03Rik, Kcnip2
Upstream genePax2, LOC383450, LOC100042752, 6030443O07Rik, Sema4g, Mrpl43, Peo1, Lzts2, Pdzd7, EG435601, LOC100042760, Sfxn3, Kazald1, Tlx1, Lbx1, Btrc, EG627889, Poll, 5330431N19Rik
Downstream gene9130011E15Rik, EG627939, 4930505N22Rik, Hps6, Ldb1, Pprc1, Nolc1, Elovl3, Pitx3, Gbf1, LOC668094, Nfkb2, Psd, Fbxl15, Cuedc2, 2310034G01Rik, Tmem180, Actr1a, Sufu, Trim8, Arl3, Sfxn2, D19Wsu162e, Cyp17a1, EG629359, 2010012O05Rik, As3mt, Cnnm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227I14.bB6Ng01-227I14.g
ACCGA041183GA041184
length1,1751,137
definitionB6Ng01-227I14.b B6Ng01-227I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,680,411 - 45,681,572)(45,867,391 - 45,868,514)
sequence
gaattccgggacagcctggagtacacacatcaatattgtctcaaaaagca
gtggggcagggaagtagaagaggtggctcagtggttaagagtgcacactg
caggtgcatatatatacgcatatacacataattacaaatactaaatagtt
ttaaacacatgcatgcatacatacacaagcctaggtaaagctgtactctc
aaatatattcttcctatattcctgtctagagcctttcttacacatccagc
ctgaagggagggatttctactacctgtggccccttggtaagcaaataact
tggaatatttgattatttggaagagcctaccccttaacacttaatttgac
ttcttcagaacactgaaatgaaggtcaaatacaccatgaaccacaaggaa
ttgctggggacaagagcagggaccaactcaatgccatggccaccatcggt
gccatcaactcccagtaaaaaatagtaagattcagagccatccgggtgtg
agccttcctcacctgtgatctgagatacagacagacatacgcactaaatt
agtctcctgactcacaagtcaacctcccttcctgcaagcttctccaacct
gtgcctctcaataactggctggggagggccacactctgcaaaccagagtt
tcctgtgcatacattgttatcagccaagccaggtgcccagagagcatgcc
caaacctctactttcttacctgttcagtcttctctcacctcatttctacc
caagtaacacaggaacaatgctacagaggagcggagcatgtctacccttc
agtcccactcaactgttccagcccaaagccactaggtggttactggcatt
caaccctccatttgccaactgtctgaggtggacagctatgctgtggctca
attccctggtgctgctatttggctcctcttccaggagaagaaaaacatgg
gcttggtcagagcctgggaaagcgctacaccgcttgctgagttgtcctgg
cctttaccacctttcactgagaaagaacacatgtacggactacacacaca
cacacatcacacacacacatcacacatcaacaactaccatgccagtactt
tgtgtttccactggtgttcaataaggcatggttcccaacatgagcaaact
ccacccacaccctgtagacacattg
gaattcattgagtcttgtcaacaggtatggctccactctctacacatctc
tgtcctgaactaaagttcagacctaaatccatgaaacaggaaaaggctcc
cctcaacttcatgtcacaccccacctcccaatcctgttctctcatgacca
gggcagatttaccccttctccgcctcagatcccccaggtaaccttcttaa
ttcctgaatgtccccctcttcgactaaacgtctttctctgtgtctctgac
aagctttctttctctctctctctctctctgcctgcctccctcctgccatg
accacaggacgagaacatcatgaggtccatgcaactctttgataatgtca
tctagctccccagggagaggggttagtgtgtcccagggtaaccatgctgt
agccctagtccaggcaaacctaaccctcctctccccgggtctgtcctcat
cctacctgtaccctgggggctgtagggattcaacatcctggcgcttcagt
agtccagatccctgagctaagtggcgagagtaggcaagctaagtctttgg
agggtgggtgggggcgcgcagattcccaacccccgacgactctcacccct
ttctcgactgatacccagtgctgaggctacccctggtgtcgggaacgacc
aagtggttctctgcctcccagcccactctagagaccacactagacggaat
atctcctgctatggtgctttccccatccctgaccgcagattttcctctaa
gactcccttctcagagaatatgctttgtccctgtccctgggctggctttt
tcagcctagcctttgaggaccctgtgggaggggagaataaagaaagcaga
caaatcttggccctgagccagtggttaggtcctaggaatcagctggagtg
gagaccagaaagcctgggcaggctatggagagcccaggttggctgtcatc
gccaggtttcacagggctgctgctcttgggtccagcagagttatgagttt
tcagactttccaagaaggccttatgtccttagccattgtcccaagaaatt
caccaataaacttctcagatgtctaaggatccagatgtccggtccattcc
ctggaaccttctcctcctccttgcctctatgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_45680411_45681572
seq2: B6Ng01-227I14.b_46_1220

seq1  GAATTCCGGGACAGCCTGGAGTACACACATCAATATTGTCTCAAAAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGGGACAGCCTGGAGTACACACATCAATATTGTCTCAAAAAGCA  50

seq1  GTGGGGCAGGGAAGTAGAAGAGGTGGCTCAGTGGTTAAGAGTGCACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCAGGGAAGTAGAAGAGGTGGCTCAGTGGTTAAGAGTGCACACTG  100

seq1  CAGGTGCATATATATACGCATATACACATAATTACAAATACTAAATAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCATATATATACGCATATACACATAATTACAAATACTAAATAGTT  150

seq1  TTAAACACATGCATGCATACATACACAAGCCTAGGTAAAGCTGTACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACATGCATGCATACATACACAAGCCTAGGTAAAGCTGTACTCTC  200

seq1  AAATATATTCTTCCTATATTCCTGTCTAGAGCCTTTCTTACACATCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTCTTCCTATATTCCTGTCTAGAGCCTTTCTTACACATCCAGC  250

seq1  CTGAAGGGAGGGATTTCTACTACCTGTGGCCCCTTGGTAAGCAAATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGAGGGATTTCTACTACCTGTGGCCCCTTGGTAAGCAAATAACT  300

seq1  TGGAATATTTGATTATTTGGAAGAGCCTACCCCTTAACACTTAATTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATATTTGATTATTTGGAAGAGCCTACCCCTTAACACTTAATTTGAC  350

seq1  TTCTTCAGAACACTGAAATGAAGGTCAAATACACCATGAACCACAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAGAACACTGAAATGAAGGTCAAATACACCATGAACCACAAGGAA  400

seq1  TTGCTGGGGACAAGAGCAGGGACCAACTCAATGCCATGGCCACCATCGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGGGACAAGAGCAGGGACCAACTCAATGCCATGGCCACCATCGGT  450

seq1  GCCATCAACTCCCAGTAAAAAATAGTAAGATTCAGAGCCATCCGGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCAACTCCCAGTAAAAAATAGTAAGATTCAGAGCCATCCGGGTGTG  500

seq1  AGCCTTCCTCACCTGTGATCTGAGATACAGACAGACATACGCACTAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCTCACCTGTGATCTGAGATACAGACAGACATACGCACTAAATT  550

seq1  AGTCTCCTGACTCACAAGTCAACCTCCCTTCCTGCAAGCTTCTCCAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCTGACTCACAAGTCAACCTCCCTTCCTGCAAGCTTCTCCAACCT  600

seq1  GTGCCTCTCAATAACTGGCTGGGGAGGGCCACACTCTGCAAACCAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTCAATAACTGGCTGGGGAGGGCCACACTCTGCAAACCAGAGTT  650

seq1  TCCTGTGCATACATTGTTATCAGCCAAGCCAGGTGCCCAGAGAGCATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCATACATTGTTATCAGCCAAGCCAGGTGCCCAGAGAGCATGCC  700

seq1  CAAACCTCTACTTTCTTACCTGTTCAGTCTTCTCTCACCTCATTTCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCTCTACTTTCTTACCTGTTCAGTCTTCTCTCACCTCATTTCTACC  750

seq1  CAAGTAACACAGGAACAATGCTACAGAGGAGCGGAGCATGTCTACCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAACACAGGAACAATGCTACAGAGGAGCGGAGCATGTCTACCCTTC  800

seq1  AGTCCCACTCAACTGTTCCAGCCCAAAGCCACTAGGTGGTTACTGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACTCAACTGTTCCAGCCCAAAGCCACTAGGTGGTTACTGGCATT  850

seq1  CAACCCTCCA-TTGCCAACTGTCTGAGGTGGACAGCTATGCTGTGGCTCA  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCCATTTGCCAACTGTCTGAGGTGGACAGCTATGCTGTGGCTCA  900

seq1  ATTCCCTGGTGCTGCTATTTGGCTCCTCTTCCAGGAGA--GAAAACATGG  947
      ||||||||||||||||||||||||||||||||||||||   |||||||||
seq2  ATTCCCTGGTGCTGCTATTTGGCTCCTCTTCCAGGAGAAGAAAAACATGG  950

seq1  GCTTGGTCAGAGCCCTGGAAAGCGCTACACCGCTTGCTGAGTTGTCCTGG  997
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  GCTTGGTCAGAGCCTGGGAAAGCGCTACACCGCTTGCTGAGTTGTCCTGG  1000

seq1  -CTTTACCACCTTTCACTGAGAA--GACACATGTACGGACATACACACAC  1044
       ||||||||||||||||||||||   |||||||||||||| |||||||||
seq2  CCTTTACCACCTTTCACTGAGAAAGAACACATGTACGGAC-TACACACAC  1049

seq1  ACACACA-CACACACACACA-CACACA-CACACACACACATG-CAGTACT  1090
      ||||||| |||||||||||| |||||| ||   ||   |||| |||||||
seq2  ACACACATCACACACACACATCACACATCAACAACTACCATGCCAGTACT  1099

seq1  TGGTGTT--CACTGGTGTCCA--TAGGCATGGTCCCCCACATGAGCAAAC  1136
      | |||||  ||||||||| ||   ||||||||| ||| ||||||||||||
seq2  TTGTGTTTCCACTGGTGTTCAATAAGGCATGGTTCCCAACATGAGCAAAC  1149

seq1  TCCACCCACACCCTGTAGACACATTG  1162
      ||||||||||||||||||||||||||
seq2  TCCACCCACACCCTGTAGACACATTG  1175

seq1: chr19_45867391_45868514
seq2: B6Ng01-227I14.g_68_1204 (reverse)

seq1  CCCA-CCATAGGAGCAAGGAGGAGGGAGAGGTTTCAGGG-ATGGACCGGA  48
      |||| ||||||  ||||||||||||   ||||| ||||| ||||||||||
seq2  CCCACCCATAGAGGCAAGGAGGAGGAGAAGGTTCCAGGGAATGGACCGGA  50

seq1  CATCTGGATCCTAAGACA-CTGAGAAGTGTA-TGGTGAATTTC-TGGGAC  95
      |||||||||||| ||||| ||||||||| || ||||||||||| ||||||
seq2  CATCTGGATCCTTAGACATCTGAGAAGTTTATTGGTGAATTTCTTGGGAC  100

seq1  -ATTGCTAAGGACATAAGGCCTTC-TGGAAAGTCTGGAAACTCAT-ACTC  142
       || |||||||||||||||||||| ||||||||||| |||||||| ||||
seq2  AATGGCTAAGGACATAAGGCCTTCTTGGAAAGTCTGAAAACTCATAACTC  150

seq1  TGCT-GACCC-AGAGCAGCAGCCCTGTGGAACCTGGCGGTGACAGCCAAC  190
      |||| ||||| ||||||||||||||||| ||||||||| |||||||||||
seq2  TGCTGGACCCAAGAGCAGCAGCCCTGTGAAACCTGGCGATGACAGCCAAC  200

seq1  CTGGGCTCT-CATAGCCTGCCCAGGCTTTCTGGTCTCCACTCCAGCCTGA  239
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  CTGGGCTCTCCATAGCCTGCCCAGGCTTTCTGGTCTCCACTCCAG-CTGA  249

seq1  TTCCTAGGACCTAACCACTGGCTCAGGGCCAAGATTTGTCTGCTTTC-TT  288
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCCTAGGACCTAACCACTGGCTCAGGGCCAAGATTTGTCTGCTTTCTTT  299

seq1  ATTCTCCCCTCCCACAGGGTCCTCAAAGGCTAGGCTG-AAAAGCCAG-CC  336
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  ATTCTCCCCTCCCACAGGGTCCTCAAAGGCTAGGCTGAAAAAGCCAGCCC  349

seq1  AGGGACAGGGACAAAGCATATTCTCTGAGAAGGGAGTCTTAGAGGAAAAT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGGGACAAAGCATATTCTCTGAGAAGGGAGTCTTAGAGGAAAAT  399

seq1  CTGCGGTCAGGGATGGGGAAAGCACCATAGCAGGAGATATTCCGTCTAGT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTCAGGGATGGGGAAAGCACCATAGCAGGAGATATTCCGTCTAGT  449

seq1  GTGGTCTCTAGAGTGGGCTGGGAGGCAGAGAACCACTTGGTCGTTCCCGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCTAGAGTGGGCTGGGAGGCAGAGAACCACTTGGTCGTTCCCGA  499

seq1  CACCAGGGGTAGCCTCAGCACTGGGTATCAGTCGAGAAAGGGGTGAGAGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGGGTAGCCTCAGCACTGGGTATCAGTCGAGAAAGGGGTGAGAGT  549

seq1  CGTCGGGGGTTGGGAATCTGCGCGCCCCCACCCACCCTCCAAAGACTTAG  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGGGGGTTGGGAATCTGCGCGCCCCCACCCACCCTCCAAAGACTTAG  599

seq1  CTTGCCTACTCTCGCCACTTAGCTCAGGGATCTGGACTACTGAAGCGCCA  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTACTCTCGCCACTTAGCTCAGGGATCTGGACTACTGAAGCGCCA  649

seq1  GGATGTTGAATCCCTACAGCCCCCAGGGTACAGGTAGGATGAGGACAGAC  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTGAATCCCTACAGCCCCCAGGGTACAGGTAGGATGAGGACAGAC  699

seq1  CCGGGGAGAGGAGGGTTAGGTTTGCCTGGACTAGGGCTACAGCATGGTTA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAGAGGAGGGTTAGGTTTGCCTGGACTAGGGCTACAGCATGGTTA  749

seq1  CCCTGGGACACACTAACCCCTCTCCCTGGGGAGCTAGATGACATTATCAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGACACACTAACCCCTCTCCCTGGGGAGCTAGATGACATTATCAA  799

seq1  AGAGTTGCATGGACCTCATGATGTTCTCGTCCTGTGGTCATGGCAGGAGG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCATGGACCTCATGATGTTCTCGTCCTGTGGTCATGGCAGGAGG  849

seq1  GAGGCAGGCAGAGAGAGAGAGAGAGAGAAAGAAAGCTTGTCAGAGACACA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGCAGAGAGAGAGAGAGAGAGAAAGAAAGCTTGTCAGAGACACA  899

seq1  GAGAAAGACGTTTAGTCGAAGAGGGGGACATTCAGGAATTAAGAAGGTTA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGACGTTTAGTCGAAGAGGGGGACATTCAGGAATTAAGAAGGTTA  949

seq1  CCTGGGGGATCTGAGGCGGAGAAGGGGTAAATCTGCCCTGGTCATGAGAG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGGGATCTGAGGCGGAGAAGGGGTAAATCTGCCCTGGTCATGAGAG  999

seq1  AACAGGATTGGGAGGTGGGGTGTGACATGAAGTTGAGGGGAGCCTTTTCC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTGGGAGGTGGGGTGTGACATGAAGTTGAGGGGAGCCTTTTCC  1049

seq1  TGTTTCATGGATTTAGGTCTGAACTTTAGTTCAGGACAGAGATGTGTAGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGGATTTAGGTCTGAACTTTAGTTCAGGACAGAGATGTGTAGA  1099

seq1  GAGTGGAGCCATACCTGTTGACAAGACTCAATGAATTC  1124
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAGCCATACCTGTTGACAAGACTCAATGAATTC  1137