BAC Information

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BAC

Clone NameB6Ng01-228I20
Chromosome19 (Build37)
Map Location 26,333,228 - 26,334,312
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneAnkrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228I20.bB6Ng01-228I20.g
ACCGA041936GA041937
length1,2121,088
definitionB6Ng01-228I20.b B6Ng01-228I20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgaaaatgaagacacaacataccgaaacttatgggacacaat
gaaagcagcattaagaggaaaattcattgtggtaaatgccttcataaaga
aattggagagatctcatactagcaacttaacagcacacctgaaagctcta
gaacagatagaagcaaacatactcaagaggaatagacagcaggaaatagt
aaaactcagggctgaagtcaaccacctagaaacaaagagaacatacaaag
aatcaacaaaaccaaaagctggttttttgagaaaatcaacaagaaaaatg
aacacttagcaaactaactatagagtacggagacagtatctgaaaacaag
acataacaacagaaactgaggaaatttaaaaaaatcattagaacctacta
caaaagcctatactcaacaaaactggaaaaatctagatgaaatggatgat
tttctagacagataccatgtaccaaagtcaaatcaagatcaggtaaccta
tctaaaacagtcacacaaactcctaaggaaatagaaatattcagcaaccc
caccgccaccaccaacaaaaaaatcctagggacagatggttttagtgaag
aattccactggaccttttaatgaagagctaataccagtactcctcaaact
gttccacaaaatagaaacagaaggaacatcatctaattcattctacgaag
ccacagttactttgatagctaaaccacacaaacacccaacaaagaaagcg
aactttatgccaatatcactcatgaatattgatgcaaaaataataaaatt
ttcacaaaccagatccaagaacacatcaaaaccattattcaccacaatca
agtaggcttcatcccaggtatacagggatggttcagtataagaaaatcca
tcaaagtaatacagtatataaacaaactcaaggaaaaaagtcatatgatc
gcctcatcagatgccaagaaagccttcaacaaaaatatacacccccttca
tgtaaaaagtcttgagagatcagcagcacataccttcatggcacatacta
aatatattaaaagcgaatatatagcaaccaatagccaacatccaagttaa
attggagagaaactaggaaaaaaaaattcccacttaaactcaggacaata
ttccaagtgtcctacctctcttttccatcctatccaattgcacactaact
cctgggaaagtt
gaattctgttgaaaaagaatgaggttctgccaggtcctgtcagagatgaa
gaaaacagacttgaatgggggagctaaagcccctgaaaagggaagtgctg
acaggttacactcgtcatgaaacatgcgtgcagcacccagggggcactga
cttggaaaacatgccaaagttggccagcaggtcccagcatgcaggaacta
gaagggaactaattaattaaagagtgtcaaacacattgtcagagtgcaga
cacagagaataatgtggactccgagtgctttcttagagggtggtagtggt
ggtaataagattacactgaacccataagaacttttgtcagataaagatgg
attcaaacatattttgattttatcatagagagaagacagattgctgctcc
aaaatctgtatgaaatagagaaactaaatgtttcctaaagataagagaga
aaaactaacgtttactgagcacatatcacacgcagttattgacaggaatc
tcctaggtactgcactgacccttttagaggtcccttacatcagggtctac
gtgaagttatgcagagctgcagccctgacgccatcttgtttgccaagtca
gtcacctcacttcatcctgtgaaaaagcagtcaaggaaatgctattttac
acatgaggaaacagatctctgaccccacaatgcattgcaacctttgaaca
ttccttaatcttgctggactttaaagtcctcagttaccatgctaccccac
attaaatgcccaggtggcagccattgctgtatgatcaactttttttggaa
acagcagctaagaaaatgctttgagacttctctcatctacagggaaatgc
tgacttgagcagactctaactcaaccctttctattttgttcctgagatgt
ttttctcctgaaagcataagtcttcatttcaagattctctccctccctca
tttgaatccttgttcctcaaatttattctactgttggacgttcaatttct
accctgcaactctttgggtgctaactctcttcaggatactatatttaaca
gggaaggaagcactagactctcttagacagccattagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26333228_26334312
seq2: B6Ng01-228I20.g_69_1156

seq1  GAATTCTGTTGAAAAAGAATGAGGTTCTGCCAGGTCCTGTCAGAGATGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAAAAAGAATGAGGTTCTGCCAGGTCCTGTCAGAGATGAA  50

seq1  GAAAACAGACTTGAATGGGGGAGCTAAAGCCCCTGAAAAGGGAAGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGACTTGAATGGGGGAGCTAAAGCCCCTGAAAAGGGAAGTGCTG  100

seq1  ACAGGTTACACTCGTCATGAAACATGCGTGCAGCACCCAGGGGGCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTACACTCGTCATGAAACATGCGTGCAGCACCCAGGGGGCACTGA  150

seq1  CTTGGAAAACATGCCAAAGTTGGCCAGCAGGTCCCAGCATGCAGGAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAACATGCCAAAGTTGGCCAGCAGGTCCCAGCATGCAGGAACTA  200

seq1  GAAGGGAACTAATTAATTAAAGAGTGTCAAACACATTGTCAGAGTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAACTAATTAATTAAAGAGTGTCAAACACATTGTCAGAGTGCAGA  250

seq1  CACAGAGAATAATGTGGACTCCGAGTGCTTTCTTAGAGGGTGGTAGTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAATAATGTGGACTCCGAGTGCTTTCTTAGAGGGTGGTAGTGGT  300

seq1  GGTAATAAGATTACACTGAACCCATAAGAACTTTTGTCAGATAAAGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAAGATTACACTGAACCCATAAGAACTTTTGTCAGATAAAGATGG  350

seq1  ATTCAAACATATTTTGATTTTATCATAGAGAGAAGACAGATTGCTGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACATATTTTGATTTTATCATAGAGAGAAGACAGATTGCTGCTCC  400

seq1  AAAATCTGTATGAAATAGAGAAACTAAATGTTTCCTAAAGATAAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGTATGAAATAGAGAAACTAAATGTTTCCTAAAGATAAGAGAGA  450

seq1  AAAACTAACGTTTACTGAGCACATATCACACGCAGTTATTGACAGGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAACGTTTACTGAGCACATATCACACGCAGTTATTGACAGGAATC  500

seq1  TCCTAGGTACTGCACTGACCCTTTTAGAGGTCCCTTACATCAGGGTCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGTACTGCACTGACCCTTTTAGAGGTCCCTTACATCAGGGTCTAC  550

seq1  GTGAAGTTATGCAGAGCTGCAGCCCTGACGCCATCTTGTTTGCCAAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTTATGCAGAGCTGCAGCCCTGACGCCATCTTGTTTGCCAAGTCA  600

seq1  GTCACCTCACTTCATCCTGTGAAAAAGCAGTCAAGGAAATGCTATTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCACTTCATCCTGTGAAAAAGCAGTCAAGGAAATGCTATTTTAC  650

seq1  ACATGAGGAAACAGATCTCTGACCCCACAATGCATTGCAACCTTTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGGAAACAGATCTCTGACCCCACAATGCATTGCAACCTTTGAACA  700

seq1  TTCCTTAATCTTGCTGGACTTTAAAGTCCTCAGTTACCATGCTACCCCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAATCTTGCTGGACTTTAAAGTCCTCAGTTACCATGCTACCCCAC  750

seq1  ATTAAATG-CCAGGTGGCAGCCATTGCTGTATGATCAAC-TTTTTTGGAA  798
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  ATTAAATGCCCAGGTGGCAGCCATTGCTGTATGATCAACTTTTTTTGGAA  800

seq1  ACAGCAGCTAAGAAAATGCTTTGAGACTTCTCTCATCTACAGGG-AATGC  847
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAGCAGCTAAGAAAATGCTTTGAGACTTCTCTCATCTACAGGGAAATGC  850

seq1  TGACTTGAGCAGACTCTAACTCAACCC-TTCTATTTTGTTCCTGAGATG-  895
      ||||||||||||||||||||||||||| ||||||||||||||||||||| 
seq2  TGACTTGAGCAGACTCTAACTCAACCCTTTCTATTTTGTTCCTGAGATGT  900

seq1  TTTTCTCCTGAAAGCATAAGTCTTCATTTTCAAGA-TCTCT-CCTCCCTC  943
      |||||||||||||||||||||||||| |||||||| ||||| ||||||||
seq2  TTTTCTCCTGAAAGCATAAGTCTTCA-TTTCAAGATTCTCTCCCTCCCTC  949

seq1  ATTTTGAATCCTTGTTCTCAAAATTTATTCTACTGTTGGACGTTCAATTT  993
      | |||||||||||||||   ||||||||||||||||||||||||||||||
seq2  A-TTTGAATCCTTGTTCCTCAAATTTATTCTACTGTTGGACGTTCAATTT  998

seq1  CTTACCTGCAAACCTCTTT-GGTGCTAACTCTCTCAGGGATACTTATATT  1042
      ||  |||||||  |||||| ||||||||||||||   |||||| ||||||
seq2  CTACCCTGCAA--CTCTTTGGGTGCTAACTCTCTTCAGGATAC-TATATT  1045

seq1  TAAACAGGGAAGAAAGCACTAGAATCTC-TAGACAGCCATTAGC  1085
      | |||||||||| |||||||||| |||| |||||||||||||||
seq2  T-AACAGGGAAGGAAGCACTAGACTCTCTTAGACAGCCATTAGC  1088