BAC Information

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BAC

Clone NameB6Ng01-229O24
Chromosome19 (Build37)
Map Location 26,115,716 - 26,116,836
singlet/doubletsinglet
Overlap gene1700048O14Rik
Upstream geneDock8, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2, EG667806
Downstream geneLOC100041846, LOC100041857, Smarca2, Gm815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229O24.bB6Ng01-229O24.g
ACCGA042933GA042934
length7181,114
definitionB6Ng01-229O24.b B6Ng01-229O24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccagcagggtttgccacagagcgtggcttcacatataacagtcct
ctggttaatatagtatgaatgaccactgtatgtctgttcaaggctgtgtc
cacaaatttttcataaactacagttgcttgggacagtgaattctagagca
aacatttttcttttcctctaaaacattgtggcaataattcagaggacagt
ctgaagccttggggcggggtgaggagtagggctatgaaatgttggcttct
agacatgatgtggcagttgaacaagtcaacttcacagcagttgtggttat
ctgcacaagactcacataacattaagccagtcaaaattcaagcatgagta
gggggagagccccctgaaggtcaccataacagaggtgccagtggcagttg
atagattttgaggggaggagagtcatgttcctttgaggatgtggcttctg
tagattgtccatgtcctagtagatagcccgacacccattcatataaatgc
atcagcagttagactcagaaggacatgaagttaggaggaagttagggtat
ggaaaataggggcagctagagggtagtagtggtggatgaatatgatcaat
actctctcaattaaaatccccaccaaaatatgatacatgtatacaatata
tgggggtgccattgagtattgaaatggtatttaaaacatgaggcaagcag
agattgttaagaaccaac

gaattctttacctaagtgttccaatgaagtaacgattattgaatgacagc
gatgaaagttagtgctaccatagcacttgctatgggccagaaactcattt
agttatcctcacagaagcaggggaggcactgacaggacatttttacgcag
tgggaaattgaagctcagggaagttgaggattttctccaaggcctcccca
gcctgttagaaatggtagaagctggaatctgactttagaattcccatgct
aagccactgttcatatcacacttttcaaccaatgctgtttgaaaagtcag
ctgatgagatggcctacgatatagtcatatatgtgctattttacttttca
acattttcacaaacctctgtatctgggtcaccctgatataaaaatatggg
agattttttttgaaactgaatcctactttatggtactatatgagttaagt
ttaaaagcaaccagatgttctcaaagcatgtgaaactcagattcactctg
tcctagatggcatttggaacatacgcataactcttttcaaatatgatttt
tatctaaatggtatcccttaaaacttcatcttaacaccccaaatgatccc
cagctgttagggtagattggaccctgctgagcttgtttcccaacaggacc
tatattccaccataaatattcattatgccatgctcttgatacccatggac
agtcagggtccgtttagtcagctccccctcagctgggattagcatctttc
acctattacctggcttctgaattacagctcagcttcgccatgctctgcat
tttctgtacttctgcagctatctgagaagcctgaagaaaacacgaagtgt
taaaagaaaagtctaatcccaggaagttgggcccagggaggatacaaaat
caattttttaagatacagtatcttattcaaactttacaccagaccgggag
cgaaactactgttttcttacttttgccagggtttctaggcacagcaagct
ctgtagagcccaggattttctggggtcaggagtgggtatgcaggaagaag
tgagggggctctaaccacagaccggcacatgaccagcctaaggagaatta
cactcctccatgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_26115716_26116836
seq2: B6Ng01-229O24.g_67_1180

seq1  GAATTCTTTACCTAAGTGTTCCAATGAAGTAACGATTATTGAATGACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCTAAGTGTTCCAATGAAGTAACGATTATTGAATGACAGC  50

seq1  GATGAAAGTTAGTGCTACCATAGCACTTGCTATGGGCCAGAAACTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAAGTTAGTGCTACCATAGCACTTGCTATGGGCCAGAAACTCATTT  100

seq1  AGTTATCCTCACAGAAGCAGGGGAGGCACTGACAGGACATTTTTACGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATCCTCACAGAAGCAGGGGAGGCACTGACAGGACATTTTTACGCAG  150

seq1  TGGGAAATTGAAGCTCAGGGAAGTTGAGGATTTTCTCCAAGGCCTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATTGAAGCTCAGGGAAGTTGAGGATTTTCTCCAAGGCCTCCCCA  200

seq1  GCCTGTTAGAAATGGTAGAAGCTGGAATCTGACTTTAGAATTCCCATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTAGAAATGGTAGAAGCTGGAATCTGACTTTAGAATTCCCATGCT  250

seq1  AAGCCACTGTTCATATCACACTTTTCAACCAATGCTGTTTGAAAAGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGTTCATATCACACTTTTCAACCAATGCTGTTTGAAAAGTCAG  300

seq1  CTGATGAGATGGCCTACGATATAGTCATATATGTGCTATTTTACTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGAGATGGCCTACGATATAGTCATATATGTGCTATTTTACTTTTCA  350

seq1  ACATTTTCACAAACCTCTGTATCTGGGTCACCCTGATATAAAAATATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCACAAACCTCTGTATCTGGGTCACCCTGATATAAAAATATGGG  400

seq1  AGATTTTTTTTGAAACTGAATCCTACTTTATGGTACTATATGAGTTAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTTTGAAACTGAATCCTACTTTATGGTACTATATGAGTTAAGT  450

seq1  TTAAAAGCAACCAGATGTTCTCAAAGCATGTGAAACTCAGATTCACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCAACCAGATGTTCTCAAAGCATGTGAAACTCAGATTCACTCTG  500

seq1  TCCTAGATGGCATTTGGAACATACGCATAACTCTTTTCAAATATGATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATGGCATTTGGAACATACGCATAACTCTTTTCAAATATGATTTT  550

seq1  TATCTAAATGGTATCCCTTAAAACTTCATCTTAACACCCCAAATGATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAATGGTATCCCTTAAAACTTCATCTTAACACCCCAAATGATCCC  600

seq1  CAGCTGTTAGGGTAGATTGGACCCTGCTGAGCTTGTTTCCCAACAGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTAGGGTAGATTGGACCCTGCTGAGCTTGTTTCCCAACAGGACC  650

seq1  TATATTCCACCATAAATATTCATTATGCCATGCTCTTGATACCCATGGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCCACCATAAATATTCATTATGCCATGCTCTTGATACCCATGGAC  700

seq1  AGTCAGGGTCCGTTTAGTCAGCTCCCCCTCAGCTGGGATTAGCATCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGGTCCGTTTAGTCAGCTCCCCCTCAGCTGGGATTAGCATCTTTC  750

seq1  ACCTATTACCTGGCTTCTGAATTACAGCTCAGCTTCGCCATGCTCTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTACCTGGCTTCTGAATTACAGCTCAGCTTCGCCATGCTCTGCAT  800

seq1  TTTCTGTACTTCTGCAGCTATCTGAGAAGCCTGAAGAAAACACGAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTACTTCTGCAGCTATCTGAGAAGCCTGAAGAAAACACGAAGTGT  850

seq1  TAAAAGAAAAGTCTAATCCCAGGAAGTT-GGCCCAGGGAGGATACAAAAT  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAAAGAAAAGTCTAATCCCAGGAAGTTGGGCCCAGGGAGGATACAAAAT  900

seq1  CAA-TTTTTAAGATACAGTATCTTATTCAAACTTTACACCAGACC-GGAG  947
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAATTTTTTAAGATACAGTATCTTATTCAAACTTTACACCAGACCGGGAG  950

seq1  CGAAACTACTGTTTTCTTACTTTTGCCAGGGTTTCTAGGCAACAGCAAGG  997
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  CGAAACTACTGTTTTCTTACTTTTGCCAGGGTTTCTAGGC-ACAGCAAG-  998

seq1  CCTCTGTAAGAGGCCCAGGGATTTTTCTTGGGGTCAGAAGTGGGTATGCA  1047
       |||||| ||| ||||| |||||||   ||||||||| ||||||||||||
seq2  -CTCTGT-AGA-GCCCA-GGATTTT--CTGGGGTCAGGAGTGGGTATGCA  1042

seq1  GGAGAGAAGTGAAGGGGGGCTCTTACCACAGA-CAGCACATGACCAGC--  1094
      ||| ||||||||  ||||||||| |||||||| | |||||||||||||  
seq2  GGA-AGAAGTGA--GGGGGCTCTAACCACAGACCGGCACATGACCAGCCT  1089

seq1  TAGGAAGATTACACTTCCTCCCATGAT  1121
       ||||  ||||||| |||| |||||||
seq2  AAGGAGAATTACAC-TCCT-CCATGAT  1114


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