BAC Information

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BAC

Clone NameB6Ng01-230A17
Chromosome19 (Build37)
Map Location 56,047,186 - 56,223,248
singlet/doubletdoublet
Overlap geneLOC100043484
Upstream geneGpam, Tectb, Gucy2g, Acsl5, Zdhhc6, Vti1a, LOC100043479, Tcf7l2, Ppnr
Downstream geneHabp2, Nrap, Casp7, 9930023K05Rik, Dclre1a, Nhlrc2, Adrb1, EG629643, A630007B06Rik, 1700010L13Rik, Tdrd1, Vwa2, Afap1l2, Ablim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230A17.bB6Ng01-230A17.g
ACCGA043014GA043015
length1,165848
definitionB6Ng01-230A17.b B6Ng01-230A17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,047,186 - 56,048,343)(56,222,401 - 56,223,248)
sequence
gaattcccaacaatttctgaaatgacctgaaacattctgctgttttgctc
acagcatggagaagtataaaatcaaaatatcatacaactatgacaagtgt
tgagtatgttttaagtcctgcatacagtgctaaatattcagtgaggattg
aattctttctataaaaataagcaagactacccatctaattagtatgcaaa
ttagcattcatttttaataaatgataagactatatgtataccagagaatg
atctgaacatttctttatggtttttaatcacagtgtttgatttgtatagt
tattatatatacccagagtcatgtaaaattttctcatgcaaaaagcattt
gcaagtgaggagggaataaaaggtcatgttttggagtgtctggaacctca
ccccgttggctgaaaacccacctaaagaaaatgaccgtggagtatcagcc
gtgtccttctactgagtgaggaacagtcatagggtggggcagaagatata
cctaaccgcacaaatagaactccgaagcttcttggtgattcaaacctgga
attccagctactcaggaagctgaggcaggaggattgcaagcaacttcagg
ccctgcctgtgctacagggtgagctcaagaccacctgggagaccttctct
ccaaacaaaaagaggctgggatacagctaggtgttagaattccaagtaca
aggccttgggtccaatacccagtaccaagggtgttgggagaagtactggc
cgtgcaccatgacaggctcagcgaagagaaaggtgcagcctgaggcacac
catccagagaggctttcaggaaagaataagcttccagatgacctttgaac
aatgatcaggtttcttttgtccagtgtttcacatataaattatttataac
atttataaattataaaaattagaaaaccaatataccttctctatggaaaa
tattacaacgtacaaagaagaaaatttaagttgtgccagataacaagtgg
tattttgcatctatttcttcctagccctttgtctggtgtaacatgcccat
ctagtcacacgtggcttttcacaggaagaagcttatacttagtgactccc
tccttggagggctacctcgacctccacagaatttcacaaatcaattaggt
agcgatctatgaaaa
gaattctctgtaatcctccttcaagctgggatagtttgaggcacacatga
tgctgacagatctcaccacctaggtataaatattcataaggtgagaaagc
tcatctttgttacaggtaaactaaagaataggccattttactctctccta
ctgaaggtatcctgcagacctgccctgtggtgtgcatcccaaaagactat
gaatgctcagccatttggccaagtaggtaggaaaagcttagagatcccag
aaccacagaatcctggggacatggactcaatagcattgaaccccgtagaa
atgctcattcagagaatcagaatggaatgaaatcattccagtttttcata
ctaagatgggagatcattgccgttcaccagattatagttcttgctaagcc
ttggatttctctgtggccagccttagccacactgcaggtagatgacccta
tgaacgggcaatggtttatgctatgaaaatagactctatgccaacattac
ctctgtggcctctgctgctggagtagtgagcccaagtatccagatgcaca
tgtctactcagccaagcccctcagagcaaaacaccttttctacagccatg
caacatctcagtgtccttggcatggctgagagcatggacttccccaagcc
atccagggaacccagggagcaagtctcatacaggcaagtgccacaggctc
caagcttgaaatctccaagagagtggcttggcctgcacagcagaaccctt
acctgcagaaatcagagatgcccacccaggaggcacattcaaatgctaac
tccttgacctcatgctgtgaccaagagtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_56047186_56048343
seq2: B6Ng01-230A17.b_30_1194

seq1  GAATTCCCAACAATTTCTGAAATGACCTGAAACATTCTGCTGTTTTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAACAATTTCTGAAATGACCTGAAACATTCTGCTGTTTTGCTC  50

seq1  ACAGCATGGAGAAGTATAAAATCAAAATATCATACAACTATGACAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGGAGAAGTATAAAATCAAAATATCATACAACTATGACAAGTGT  100

seq1  TGAGTATGTTTTAAGTCCTGCATACAGTGCTAAATATTCAGTGAGGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGTTTTAAGTCCTGCATACAGTGCTAAATATTCAGTGAGGATTG  150

seq1  AATTCTTTCTATAAAAATAAGCAAGACTACCCATCTAATTAGTATGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTCTATAAAAATAAGCAAGACTACCCATCTAATTAGTATGCAAA  200

seq1  TTAGCATTCATTTTTAATAAATGATAAGACTATATGTATACCAGAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTCATTTTTAATAAATGATAAGACTATATGTATACCAGAGAATG  250

seq1  ATCTGAACATTTCTTTATGGTTTTTAATCACAGTGTTTGATTTGTATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACATTTCTTTATGGTTTTTAATCACAGTGTTTGATTTGTATAGT  300

seq1  TATTATATATACCCAGAGTCATGTAAAATTTTCTCATGCAAAAAGCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATATATACCCAGAGTCATGTAAAATTTTCTCATGCAAAAAGCATTT  350

seq1  GCAAGTGAGGAGGGAATAAAAGGTCATGTTTTGGAGTGTCTGGAACCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGAGGAGGGAATAAAAGGTCATGTTTTGGAGTGTCTGGAACCTCA  400

seq1  CCCCGTTGGCTGAAAACCCACCTAAAGAAAATGACCGTGGAGTATCAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTTGGCTGAAAACCCACCTAAAGAAAATGACCGTGGAGTATCAGCC  450

seq1  GTGTCCTTCTACTGAGTGAGGAACAGTCATAGGGTGGGGCAGAAGATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTCTACTGAGTGAGGAACAGTCATAGGGTGGGGCAGAAGATATA  500

seq1  CCTAACCGCACAAATAGAACTCCGAAGCTTCTTGGTGATTCAAACCTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCGCACAAATAGAACTCCGAAGCTTCTTGGTGATTCAAACCTGGA  550

seq1  ATTCCAGCTACTCAGGAAGCTGAGGCAGGAGGATTGCAAGCAACTTCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCTACTCAGGAAGCTGAGGCAGGAGGATTGCAAGCAACTTCAGG  600

seq1  CCCTGCCTGTGCTACAGGGTGAGCTCAAGACCACCTGGGAGACCTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTGTGCTACAGGGTGAGCTCAAGACCACCTGGGAGACCTTCTCT  650

seq1  CCAAACAAAAAGAGGCTGGGATACAGCTAGGTGTTAGAATTCCAAGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAAAGAGGCTGGGATACAGCTAGGTGTTAGAATTCCAAGTACA  700

seq1  AGGCCTTGGGTCCAATACCCAGTACCAAGGGTGTTGGGAGAAGTACTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGGTCCAATACCCAGTACCAAGGGTGTTGGGAGAAGTACTGGC  750

seq1  CGTGCACCATGACAGGCTCAGCGAAGAGAAAGGTGCAGCCTGAGGCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCACCATGACAGGCTCAGCGAAGAGAAAGGTGCAGCCTGAGGCACAC  800

seq1  CATCCAGAGAGGCTTTCAGGAAAGAATAAGCTTCCAGATGACCTTTGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAGAGGCTTTCAGGAAAGAATAAGCTTCCAGATGACCTTTGAAC  850

seq1  AATGATCAGGTTTCTTTTGTCCAGTGTTTCACATATAAATTATTTATAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCAGGTTTCTTTTGTCCAGTGTTTCACATATAAATTATTTATAAC  900

seq1  ATTTATAAATTATAAAAATTAGAAAACCAATATACCTTCTCTATGGAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAATTATAAAAATTAGAAAACCAATATACCTTCTCTATGGAAAA  950

seq1  TATTACAACGTACAAAGAAGAAAATTAAAGTGGTGCCAGAT-ACAAGTGG  999
      |||||||||||||||||||||||||| |||| ||||||||| ||||||||
seq2  TATTACAACGTACAAAGAAGAAAATTTAAGTTGTGCCAGATAACAAGTGG  1000

seq1  TATTTTGCATCTATTTCTTCCTAGCCCTTTGTCT-GTGTAACATGCCCAT  1048
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTTTGCATCTATTTCTTCCTAGCCCTTTGTCTGGTGTAACATGCCCAT  1050

seq1  CTAGTCACACGTGGC-TTTCACAGAAGGAGGCTTATACTTAGTGACT-CC  1096
      ||||||||||||||| |||||||| | || ||||||||||||||||| ||
seq2  CTAGTCACACGTGGCTTTTCACAGGAAGAAGCTTATACTTAGTGACTCCC  1100

seq1  TC--TTGAGGGCTA-CTCGACTCACAAGGAATTTTCACAAATC-ATTAAG  1142
      ||  | |||||||| ||||||   ||  ||| ||||||||||| |||| |
seq2  TCCTTGGAGGGCTACCTCGACCTCCACAGAA-TTTCACAAATCAATTAGG  1149

seq1  TAGCGATCTATGAAAA  1158
      ||||||||||||||||
seq2  TAGCGATCTATGAAAA  1165

seq1: chr19_56222401_56223248
seq2: B6Ng01-230A17.g_64_911 (reverse)

seq1  ACACACACACACACACACACACTCTTGGTCACAGCATGAGGTCAAGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACTCTTGGTCACAGCATGAGGTCAAGGAGT  50

seq1  TAGCATTTGAATGTGCCTCCTGGGTGGGCATCTCTGATTTCTGCAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTTGAATGTGCCTCCTGGGTGGGCATCTCTGATTTCTGCAGGTAA  100

seq1  GGGTTCTGCTGTGCAGGCCAAGCCACTCTCTTGGAGATTTCAAGCTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGCTGTGCAGGCCAAGCCACTCTCTTGGAGATTTCAAGCTTGGA  150

seq1  GCCTGTGGCACTTGCCTGTATGAGACTTGCTCCCTGGGTTCCCTGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGGCACTTGCCTGTATGAGACTTGCTCCCTGGGTTCCCTGGATGG  200

seq1  CTTGGGGAAGTCCATGCTCTCAGCCATGCCAAGGACACTGAGATGTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGAAGTCCATGCTCTCAGCCATGCCAAGGACACTGAGATGTTGCA  250

seq1  TGGCTGTAGAAAAGGTGTTTTGCTCTGAGGGGCTTGGCTGAGTAGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTAGAAAAGGTGTTTTGCTCTGAGGGGCTTGGCTGAGTAGACATG  300

seq1  TGCATCTGGATACTTGGGCTCACTACTCCAGCAGCAGAGGCCACAGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGGATACTTGGGCTCACTACTCCAGCAGCAGAGGCCACAGAGGT  350

seq1  AATGTTGGCATAGAGTCTATTTTCATAGCATAAACCATTGCCCGTTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGCATAGAGTCTATTTTCATAGCATAAACCATTGCCCGTTCATA  400

seq1  GGGTCATCTACCTGCAGTGTGGCTAAGGCTGGCCACAGAGAAATCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATCTACCTGCAGTGTGGCTAAGGCTGGCCACAGAGAAATCCAAGG  450

seq1  CTTAGCAAGAACTATAATCTGGTGAACGGCAATGATCTCCCATCTTAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAAGAACTATAATCTGGTGAACGGCAATGATCTCCCATCTTAGTA  500

seq1  TGAAAAACTGGAATGATTTCATTCCATTCTGATTCTCTGAATGAGCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACTGGAATGATTTCATTCCATTCTGATTCTCTGAATGAGCATTT  550

seq1  CTACGGGGTTCAATGCTATTGAGTCCATGTCCCCAGGATTCTGTGGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGGGTTCAATGCTATTGAGTCCATGTCCCCAGGATTCTGTGGTTCT  600

seq1  GGGATCTCTAAGCTTTTCCTACCTACTTGGCCAAATGGCTGAGCATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTCTAAGCTTTTCCTACCTACTTGGCCAAATGGCTGAGCATTCAT  650

seq1  AGTCTTTTGGGATGCACACCACAGGGCAGGTCTGCAGGATACCTTCAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTGGGATGCACACCACAGGGCAGGTCTGCAGGATACCTTCAGTA  700

seq1  GGAGAGAGTAAAATGGCCTATTCTTTAGTTTACCTGTAACAAAGATGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGTAAAATGGCCTATTCTTTAGTTTACCTGTAACAAAGATGAGC  750

seq1  TTTCTCACCTTATGAATATTTATACCTAGGTGGTGAGATCTGTCAGCATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCACCTTATGAATATTTATACCTAGGTGGTGAGATCTGTCAGCATC  800

seq1  ATGTGTGCCTCAAACTATCCCAGCTTGAAGGAGGATTACAGAGAATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGCCTCAAACTATCCCAGCTTGAAGGAGGATTACAGAGAATTC  848