BAC Information

Click to search

BAC

Clone NameB6Ng01-232I19
Chromosome19 (Build37)
Map Location 8,704,642 - 8,757,842
singlet/doubletdoublet
Overlap geneChrm1
Upstream geneHrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik, EG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6
Downstream geneSlc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104, LOC623810, Pcna-ps2, LOC100040130, LOC100040137, LOC100040143, LOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232I19.bB6Ng01-232I19.g
ACCGA044856GA044857
length1,1991,166
definitionB6Ng01-232I19.b B6Ng01-232I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,704,642 - 8,705,825)(8,756,682 - 8,757,842)
sequence
gaattcctagaactcagtaaaaagaactcaagcagcccaatccaaataca
gccaaaaatccataaacacgggctttgccatagaagatacaggaacaggc
aataagcacaaaaaatgatcaacctcattataattcaggaaaatgaatat
caaaccacagtgagatgctgggtcacacccatgcgaatagctaacacata
atactctggattctatgcagccatgtgctgccctgggcagccaccatggg
atgctgcaggctcctcaccaacacaaagactttcaccagatgtgacccct
tgactttggacttcctgctactccatgtgaccaaaatgcagccaaaaggc
tgagactcggctagtgagacctacccacactggactttgattcaggggac
agtgacttgaaaatggagcccaacagaatactcccctccccacctccaca
tgatgacaggtccacagctcaggtacagaccccagtgccttcactgggct
aatttgtgggttatactacgcaacctgaattttctccataacccccccaa
ctacccaatgggctattgataaatgtgttctctccttgaaaaataaattg
aggctgagcacaccaatgtgctgaaaagaagaaacagaaatccagttcta
gtggaaacctaggcttgcagcaacggcagcagtagtgggccaaagtaaac
ctttgctctttgtaagttgacgtgcctcaggtatttgtcacagtgagaaa
aagctaatatacagagttccaaatccgaataccagacagcttactcaaca
gaaaatcactttcttacagttctagaggctgaaagtccgttatcaaagag
tcagcaggtttaagcctcttcccttggctaccttcccatcgtgtcctcgc
atggcctctcctacacacacacacacacacacacacacacacacacacct
gctgcttctttttataaaacatcagacgtttagatttggaccttactctt
tattatttgacaattccacacatgccaaataacacatgccaagttcctcc
cccaactcccactcttcccagaatatccctgacatgtttccctcttctct
caacttcctcaactttcagtaggaacagagaaaccttgaagttctgggct
ggcctgagtccttgggtcccctctctcttccctccaatggggaaacaat
gaattccaggccagccaaggctacataccaagagcttgtccaaaaaaaaa
aaaaaaaaaggcagggggaagagcatttaaacgtcaggtttcttaaattg
ccagcaggtggcgctaaaatgtcatggtggaaatggaagtaaggctgggc
tttgagtgtgggagggattctaacttgttcctcctcaggctagctccagt
ctgggattggtagaagatgtggtattcacaaagcgaccttattctctcct
tacttctaccaaaaggcctttgttcctggggtaaagagactccctcaggg
taggagtgggtgctgtgtttgagatggacagatgcccatgcaaccaccct
cttccttcagcctcatgttattctccatcctgggttggcaactctttctt
cagaggcctgcaggacccagaccccacctggactttaccctccttcttgc
ccaggtgtgcgctggacactcttcaaacccagtcacattgggatgtaaga
ttcttcttcctggtttgggggaataggactctagacttcccaaagccaga
acagaggtacagggtaagacctgggtgagaaactagacaggccattacct
gtggcagcctcttctgtggtaacaccgacggtacagccatcaattgcttt
taccagtttgccgcatccctctgacacctgcaaagggcttgctcctcttt
tagagatgaagacactgaagacaggaggcatgcctaaccaaggttatttg
gtggagggcatagcaggaccccggtgaggtccccaggagagggaacaagt
gataggtgtgggctgctactctcatttccggtcctgatgctggtctcacc
ccatccttcctgatgctggtcccatcccctccttccttgatgttccattg
gtcccaaagcttcacttcttccagtgctgctcaggcttcctccggccttc
caccttcacacccttgacacaaggcagggcatttatttctgaaaggggct
taggctaacagggagcatgaacaagcagaagctcttaccaggtcttcagc
tgtcaaacttacttggtgaataccgggtacatggcttaacttagatcatc
tccatgtactctcctgcagctctgcagctttctaccttgtcaacttagtg
ggcctatccttgccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_8704642_8705825
seq2: B6Ng01-232I19.b_50_1248

seq1  GAATTCCTAGAACTCAGTAAAAAGAACTCAAGCAGCCCAATCCAAATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAACTCAGTAAAAAGAACTCAAGCAGCCCAATCCAAATACA  50

seq1  GCCAAAAATCCATAAACACGGGCTTTGCCATAGAAGATACAGGAACAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAATCCATAAACACGGGCTTTGCCATAGAAGATACAGGAACAGGC  100

seq1  AATAAGCACAAAAAATGATCAACCTCATTATAATTCAGGAAAATGAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCACAAAAAATGATCAACCTCATTATAATTCAGGAAAATGAATAT  150

seq1  CAAACCACAGTGAGATGCTGGGTCACACCCATGCGAATAGCTAACACATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCACAGTGAGATGCTGGGTCACACCCATGCGAATAGCTAACACATA  200

seq1  ATACTCTGGATTCTATGCAGCCATGTGCTGCCCTGGGCAGCCACCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGGATTCTATGCAGCCATGTGCTGCCCTGGGCAGCCACCATGGG  250

seq1  ATGCTGCAGGCTCCTCACCAACACAAAGACTTTCACCAGATGTGACCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCAGGCTCCTCACCAACACAAAGACTTTCACCAGATGTGACCCCT  300

seq1  TGACTTTGGACTTCCTGCTACTCCATGTGACCAAAATGCAGCCAAAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGACTTCCTGCTACTCCATGTGACCAAAATGCAGCCAAAAGGC  350

seq1  TGAGACTCGGCTAGTGAGACCTACCCACACTGGACTTTGATTCAGGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCGGCTAGTGAGACCTACCCACACTGGACTTTGATTCAGGGGAC  400

seq1  AGTGACTTGAAAATGGAGCCCAACAGAATACTCCCCTCCCCACCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTGAAAATGGAGCCCAACAGAATACTCCCCTCCCCACCTCCACA  450

seq1  TGATGACAGGTCCACAGCTCAGGTACAGACCCCAGTGCCTTCACTGGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACAGGTCCACAGCTCAGGTACAGACCCCAGTGCCTTCACTGGGCT  500

seq1  AATTTGTGGGTTATACTACGCAACCTGAATTTTCTCCATAACCCCCCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGGGTTATACTACGCAACCTGAATTTTCTCCATAACCCCCCCAA  550

seq1  CTACCCAATGGGCTATTGATAAATGTGTTCTCTCCTTGAAAAATAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAATGGGCTATTGATAAATGTGTTCTCTCCTTGAAAAATAAATTG  600

seq1  AGGCTGAGCACACCAATGTGCTGAAAAGAAGAAACAGAAATCCAGTTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGCACACCAATGTGCTGAAAAGAAGAAACAGAAATCCAGTTCTA  650

seq1  GTGGAAACCTAGGCTTGCAGCAACGGCAGCAGTAGTGGGCCAAAGTAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAACCTAGGCTTGCAGCAACGGCAGCAGTAGTGGGCCAAAGTAAAC  700

seq1  CTTTGCTCTTTGTAAGTTGACGTGCCTCAGGTATTTGTCACAGTGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTCTTTGTAAGTTGACGTGCCTCAGGTATTTGTCACAGTGAGAAA  750

seq1  AAGCTAATATACAGAGTTCCAAATCCGAATACCAGACAGCTTACTCAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAATATACAGAGTTCCAAATCCGAATACCAGACAGCTTACTCAACA  800

seq1  GAAAATCACTTTCTTACAGTTCTAGAGGCTGAAAGTCCGTTATCAAAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCACTTTCTTACAGTTCTAGAGGCTGAAAGTCCGTTATCAAAGAG  850

seq1  TCAGCAGGTTTAAGCCTCTTCCCTTGGCTACCTTCCCATCGTGTCCTCGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGTTTAAGCCTCTTCCCTTGGCTACCTTCCCATCGTGTCCTCGC  900

seq1  ATGGCCTCTCCTACACACACACACACACACACACACACACACACACACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCTCCTACACACACACACACACACACACACACACACACACACCT  950

seq1  GCTGCTTCTTTTTATAAAAACATCAGACGTTTAGATTTGGACCTTACTCT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCTGCTTCTTTTTAT-AAAACATCAGACGTTTAGATTTGGACCTTACTCT  999

seq1  TTATTATTTGACAATTCCACACATG-CAAATAACACATGCCAAGTTCCTC  1049
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTATTATTTGACAATTCCACACATGCCAAATAACACATGCCAAGTTCCTC  1049

seq1  CCCCAACTCCCACTCTTCCCAG-ATATCCCTGACATGTTTCCCTC-TCTC  1097
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  CCCCAACTCCCACTCTTCCCAGAATATCCCTGACATGTTTCCCTCTTCTC  1099

seq1  TC-ACTTCCTCAAC-TTCAGTAAGGACAG-GAGACCTGGA--GTCT-GGC  1141
      || ||||||||||| ||||||| | |||| || |||| ||   ||| |||
seq2  TCAACTTCCTCAACTTTCAGTAGGAACAGAGAAACCTTGAAGTTCTGGGC  1149

seq1  T-GCCTGAGTCC-TGTGTCCTCT-TCTCT--CCTCCAATGGG--AACAAT  1184
      | |||||||||| || |||| || |||||  |||||||||||  ||||||
seq2  TGGCCTGAGTCCTTGGGTCCCCTCTCTCTTCCCTCCAATGGGGAAACAAT  1199

seq1: chr19_8756682_8757842
seq2: B6Ng01-232I19.g_68_1233 (reverse)

seq1  TGGGCAAGGATA-GCCCACTAGGTGGACAAGG-AG-AAGCTGGCCAGAGC  47
      |||||||||||| |||||||| || ||||||| || ||||||  ||||||
seq2  TGGGCAAGGATAGGCCCACTAAGTTGACAAGGTAGAAAGCTG--CAGAGC  48

seq1  TGCAGGAGA-TACATGG-GATGATCTTATGTAAGCCATGTACCCCGTA-T  94
      ||||||||| ||||||| |||||||| |  |||||||||||||| ||| |
seq2  TGCAGGAGAGTACATGGAGATGATCTAAGTTAAGCCATGTACCCGGTATT  98

seq1  CACC-AGTACAGGTTGACAGCTGAGACCCTGGTAAGGGCTTCTGGCTTGT  143
      |||| |||| || |||||||||||   ||||||||| |||||| ||||||
seq2  CACCAAGTA-AGTTTGACAGCTGAAGACCTGGTAAGAGCTTCT-GCTTGT  146

seq1  TCATGCTCCCTTGTAGCCCTAAGCCCCCTTCAGAAATAAATGCCCTGCC-  192
      |||||||||||  ||| |||||||||| ||||||||||||||||||||| 
seq2  TCATGCTCCCTGTTAG-CCTAAGCCCCTTTCAGAAATAAATGCCCTGCCT  195

seq1  TGTGTCAAGGGTGTGGAGGTGG-AGGGCGGAGGAAG-CTGAGCAGCACTG  240
      ||||||||||||||| |||||| ||| ||||||||| |||||||||||||
seq2  TGTGTCAAGGGTGTGAAGGTGGAAGGCCGGAGGAAGCCTGAGCAGCACTG  245

seq1  GAAGAAGTGAAGCTTTGGGACCAATGGAACATCAAGGAAGGAGGGGATGG  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTGAAGCTTTGGGACCAATGGAACATCAAGGAAGGAGGGGATGG  295

seq1  GACCAGCATCAGGAAGGATGGGGTGAGACCAGCATCAGGACCGGAAATGA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCATCAGGAAGGATGGGGTGAGACCAGCATCAGGACCGGAAATGA  345

seq1  GAGTAGCAGCCCACACCTATCACTTGTTCCCTCTCCTGGGGACCTCACCG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGCAGCCCACACCTATCACTTGTTCCCTCTCCTGGGGACCTCACCG  395

seq1  GGGTCCTGCTATGCCCTCCACCAAATAACCTTGGTTAGGCATGCCTCCTG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTGCTATGCCCTCCACCAAATAACCTTGGTTAGGCATGCCTCCTG  445

seq1  TCTTCAGTGTCTTCATCTCTAAAAGAGGAGCAAGCCCTTTGCAGGTGTCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTGTCTTCATCTCTAAAAGAGGAGCAAGCCCTTTGCAGGTGTCA  495

seq1  GAGGGATGCGGCAAACTGGTAAAAGCAATTGATGGCTGTACCGTCGGTGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGCGGCAAACTGGTAAAAGCAATTGATGGCTGTACCGTCGGTGT  545

seq1  TACCACAGAAGAGGCTGCCACAGGTAATGGCCTGTCTAGTTTCTCACCCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGAAGAGGCTGCCACAGGTAATGGCCTGTCTAGTTTCTCACCCA  595

seq1  GGTCTTACCCTGTACCTCTGTTCTGGCTTTGGGAAGTCTAGAGTCCTATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTACCCTGTACCTCTGTTCTGGCTTTGGGAAGTCTAGAGTCCTATT  645

seq1  CCCCCAAACCAGGAAGAAGAATCTTACATCCCAATGTGACTGGGTTTGAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACCAGGAAGAAGAATCTTACATCCCAATGTGACTGGGTTTGAA  695

seq1  GAGTGTCCAGCGCACACCTGGGCAAGAAGGAGGGTAAAGTCCAGGTGGGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCCAGCGCACACCTGGGCAAGAAGGAGGGTAAAGTCCAGGTGGGG  745

seq1  TCTGGGTCCTGCAGGCCTCTGAAGAAAGAGTTGCCAACCCAGGATGGAGA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTCCTGCAGGCCTCTGAAGAAAGAGTTGCCAACCCAGGATGGAGA  795

seq1  ATAACATGAGGCTGAAGGAAGAGGGTGGTTGCATGGGCATCTGTCCATCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATGAGGCTGAAGGAAGAGGGTGGTTGCATGGGCATCTGTCCATCT  845

seq1  CAAACACAGCACCCACTCCTACCCTGAGGGAGTCTCTTTACCCCAGGAAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAGCACCCACTCCTACCCTGAGGGAGTCTCTTTACCCCAGGAAC  895

seq1  AAAGGCCTTTTGGTAGAAGTAAGGAGAGAATAAGGTCGCTTTGTGAATAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCTTTTGGTAGAAGTAAGGAGAGAATAAGGTCGCTTTGTGAATAC  945

seq1  CACATCTTCTACCAATCCCAGACTGGAGCTAGCCTGAGGAGGAACAAGTT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTTCTACCAATCCCAGACTGGAGCTAGCCTGAGGAGGAACAAGTT  995

seq1  AGAATCCCTCCCACACTCAAAGCCCAGCCTTACTTCCATTTCCACCATGA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCCTCCCACACTCAAAGCCCAGCCTTACTTCCATTTCCACCATGA  1045

seq1  CATTTTAGCGCCACCTGCTGGCAATTTAAGAAACCTGACGTTTAAATGCT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAGCGCCACCTGCTGGCAATTTAAGAAACCTGACGTTTAAATGCT  1095

seq1  CTTCCCCCTGCCTTTTTTTTTTTTTTTTTTGGACAAGCTCTTGGTATGTA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCTGCCTTTTTTTTTTTTTTTTTTGGACAAGCTCTTGGTATGTA  1145

seq1  GCCTTGGCTGGCCTGGAATTC  1161
      |||||||||||||||||||||
seq2  GCCTTGGCTGGCCTGGAATTC  1166