BAC Information

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BAC

Clone NameB6Ng01-233C06
Chromosome19 (Build37)
Map Location 4,776,086 - 4,934,979
singlet/doubletdoublet
Overlap geneRbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3
Upstream geneSuv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b
Downstream geneMrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233C06.bB6Ng01-233C06.g
ACCGA045286GA045287
length335580
definitionB6Ng01-233C06.b B6Ng01-233C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,934,645 - 4,934,979)(4,776,086 - 4,776,666)
sequence
tctgtgaccgccggccaccctatactgcccgaatctacgctgctggcttt
gatgcctctagcaacatctttcttggagtgagtgattccccccagtatgg
ctagcccttcaacagagagctgaggggagggaggctggggagatgctgca
tcctggagtgatggaccagtacatagccatcctcctgtttactctcccgt
aaggcttagcagccttttttttttttttttttttttgaagaagcaaaggg
aagaacaaagaggtcaagtggtgcccaggacctgaaatactctctgggaa
accccagacctggaagccgggggtggggggtgggg
gaattcacagcattcattagcattcatgaatgctctagttttagtactca
atacaaaaataactgtattgttgctacaaagtttccaagttgcccaccaa
aaaatgtaaactgctactagactgagaagaagaaatagatgaggagacag
atattacctgttataactaatagatctccatgggttcaattcagatgttg
ggtattatgtgacaagtggatgaggaagcaacaaaggttcctctaaaaga
taaacatctcaaattacaacaaacctattaatactcaaagcattccagcc
caattcatcccatggctagttctgcccccaggagctaggttaaactggtc
tagagcagtagtttccctagaaatgcagagtattgtaggtaggagtcttc
atgtcaggccttcagttaaaaaagtcagtgtacatacacccctgtattgc
cagcacttgggaggcagaggcaggagagtctatgaaaagatgaagacagt
ctgatctacatagtaagctttaggacaggccattgtagagacccacctca
ataccactgaaggagggagggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4934645_4934979
seq2: B6Ng01-233C06.b_54_388 (reverse)

seq1  CCCCACCCCCCACCCCCGGCTTCCAGGTCTGGGGTTTCCCAGAGAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCCACCCCCGGCTTCCAGGTCTGGGGTTTCCCAGAGAGTATT  50

seq1  TCAGGTCCTGGGCACCACTTGACCTCTTTGTTCTTCCCTTTGCTTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCCTGGGCACCACTTGACCTCTTTGTTCTTCCCTTTGCTTCTTCA  100

seq1  AAAAAAAAAAAAAAAAAAAAAGGCTGCTAAGCCTTACGGGAGAGTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGGCTGCTAAGCCTTACGGGAGAGTAAACA  150

seq1  GGAGGATGGCTATGTACTGGTCCATCACTCCAGGATGCAGCATCTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGGCTATGTACTGGTCCATCACTCCAGGATGCAGCATCTCCCCA  200

seq1  GCCTCCCTCCCCTCAGCTCTCTGTTGAAGGGCTAGCCATACTGGGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCTCCCCTCAGCTCTCTGTTGAAGGGCTAGCCATACTGGGGGGAA  250

seq1  TCACTCACTCCAAGAAAGATGTTGCTAGAGGCATCAAAGCCAGCAGCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCACTCCAAGAAAGATGTTGCTAGAGGCATCAAAGCCAGCAGCGTA  300

seq1  GATTCGGGCAGTATAGGGTGGCCGGCGGTCACAGA  335
      |||||||||||||||||||||||||||||||||||
seq2  GATTCGGGCAGTATAGGGTGGCCGGCGGTCACAGA  335

seq1: chr19_4776086_4776666
seq2: B6Ng01-233C06.g_69_648

seq1  GAATTCACAGCATTCATTAGCATTCATGAATGCTCTAGTTTTAGTACTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCATTCATTAGCATTCATGAATGCTCTAGTTTTAGTACTCA  50

seq1  ATACAAAAATAACTGTATTGTTGCTACAAAGTTTCCAAGTTGCCCACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAATAACTGTATTGTTGCTACAAAGTTTCCAAGTTGCCCACCAA  100

seq1  AAAATGTAAACTGCTACTAGACTGAGAAGAAGAAATAGATGAGGAGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAACTGCTACTAGACTGAGAAGAAGAAATAGATGAGGAGACAG  150

seq1  ATATTACCTGTTATAACTAATAGATCTCCATGGGTTCAATTCAGATGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCTGTTATAACTAATAGATCTCCATGGGTTCAATTCAGATGTTG  200

seq1  GGTATTATGTGACAAGTGGATGAGGAAGCAACAAAGGTTCCTCTAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATGTGACAAGTGGATGAGGAAGCAACAAAGGTTCCTCTAAAAGA  250

seq1  TAAACATCTCAAATTACAACAAACCTATTAATACTCAAAGCATTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATCTCAAATTACAACAAACCTATTAATACTCAAAGCATTCCAGCC  300

seq1  CAATTCATCCCATGGCTAGTTCTGCCCCCAGGAGCTAGGTTAAACTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCATCCCATGGCTAGTTCTGCCCCCAGGAGCTAGGTTAAACTGGTC  350

seq1  TAGAGCAGTAGTTTCCCTAGAAATGCAGAGTATTGTAGGTAGGAGTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGTAGTTTCCCTAGAAATGCAGAGTATTGTAGGTAGGAGTCTTC  400

seq1  ATGTCAGGCCTTCAGTTAAAAAAGTCAGTGTACATACACCCCTGTATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGCCTTCAGTTAAAAAAGTCAGTGTACATACACCCCTGTATTGC  450

seq1  CAGCACTTGGGAGGCAGAGGCAGGAGAGTCTATGAAAAGATGAAGACAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTTGGGAGGCAGAGGCAGGAGAGTCTATGAAAAGATGAAGACAGT  500

seq1  CTGATCTACATAGTAAGCTTTAGGACAGGCCATTGTAGAGACCCACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTACATAGTAAGCTTTAGGACAGGCCATTGTAGAGACCCACCTCA  550

seq1  ATACCACTGAAGGGAGGGAGGGAGGGAGGGA  581
      ||||||||||| |||||||||||||||||||
seq2  ATACCACTGAA-GGAGGGAGGGAGGGAGGGA  580