BAC Information

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BAC

Clone NameB6Ng01-233H01
Chromosome19 (Build37)9 (Build37)
Map Location 15,469,487 - 15,469,56615,321,022 - 15,322,146
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225, EG635497, Pomc-ps1
Downstream geneLOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233H01.bB6Ng01-233H01.g
ACCGA045500GA045501
length781,116
definitionB6Ng01-233H01.b B6Ng01-233H01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,469,487 - 15,469,566)(15,321,022 - 15,322,146)
sequence
tttgtttagctctgggccccattttttaatggggttatttgattttctgg
agtccaccttcttgaggtctatatatat
gaattcaaactcaagtcctcatggccacatagcaaatactttatcaacag
ggccacctccccagatctgaactgctctcttgatctaaggtctaagactt
tcccagacgccagcagagtggaaagcatgcccaatgaatgtggatcagaa
cctcagcatccagttgaggtagatgttgagaggcctgtaaacaaatgaat
aaaacccaaaaagactttgactgcatcaacaagataaagacagtcaacta
aatggatcctagagaagccaggcaggaagatgattaaagactgttttgac
agaaatgatcaatttgacttttccctcttcttcagctctgtattatgtct
tgtatttccttggcatgcttttgtcccagtgccctcagacagacagtaag
taaacaagaaactttctttatggctgttttaagccaacttgtaatggtgg
aaagtcacaaagaggcccaagtctggggtcaacagtacagatgcaaaggc
aaggtctttcaaatcgcagtttatctaggtgctaaaaaccagtgggtaag
acagacagtcagcagagaggatctaggaagcaggtagagtccggaggccc
ggggccttgtcactacagactgcatactctttgacgtgcatgggctcttt
agagattccctgaagaaaggcactgctcaatccgcacttttcaaaagtgt
ggatgggtgtagagggccctgtcacacagagccattccaacttgtactta
agggcaaccttcacacaggacacacagcctgcactggaacggtggcactg
cctgtgaccctgggccagctttaaggtcccaagatgattttgccaactgt
ccaacactgacaaccctaacagcaccgtcctctgcgctgttgctgggatg
agttaagtcaggcctcacaaagccctcaccatgtcagccctggctcacaa
gccatgttacactcgagtctccaccatccctatcaacctcacgacatgca
gactcacaccttccatgcactctttcttctgtatctttggaactgactca
gaatctagtgtatgactaacgttgtgaaacactgcctggaagcaggcgtg
agttaggaaccagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_15469487_15469566
seq2: B6Ng01-233H01.b_51_128 (reverse)

seq1  ATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCC  50
        ||||||| ||| ||||||||||||||||||||||||||||||||||||
seq2  --ATATATATAGACCTCAAGAAGGTGGACTCCAGAAAATCAAATAACCCC  48

seq1  ATTAAAAAATGGGGCTCAGAGCTAAACAAA  80
      ||||||||||||||| ||||||||||||||
seq2  ATTAAAAAATGGGGCCCAGAGCTAAACAAA  78

seq1: chr9_15321022_15322146
seq2: B6Ng01-233H01.g_66_1181 (reverse)

seq1  CTGCT-GCTCCT-ACTCACGCCTGGCTTCAAGCCAGTGTTTCACAACGTA  48
      ||||| | |||| |||||||||| ||||| || |||||||||||||||| 
seq2  CTGCTGGTTCCTAACTCACGCCT-GCTTCCAGGCAGTGTTTCACAACGTT  49

seq1  GGTCATTACACTAGATTCTGAAGTCAGGTTTCAAAGATACAGGAAGGAAG  98
       |||| |||||||||||||| ||||| ||| |||||||||| |||| |||
seq2  AGTCA-TACACTAGATTCTG-AGTCA-GTTCCAAAGATACA-GAAGAAAG  95

seq1  AGGTGGCATGGAAGGTGTTGGAGGTTCTGCATGTCGTGAGGTTGATAGGG  148
      ||   |||||||||||||  |||  |||||||||||||||||||||||||
seq2  AG--TGCATGGAAGGTGT--GAG--TCTGCATGTCGTGAGGTTGATAGGG  139

seq1  ATGGT-GAGACTCGAGTGTAACATGGCTTTGTGAGCCAGGGCTGACATGG  197
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATGGTGGAGACTCGAGTGTAACATGGC-TTGTGAGCCAGGGCTGACATGG  188

seq1  TGAGGGCTTTGTGAGCCCTGACTTAACTCATCCCAGCAACAGCGCAGAGG  247
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGGGCTTTGTGAGGCCTGACTTAACTCATCCCAGCAACAGCGCAGAGG  238

seq1  ACGGTGCTGTTAGGGTTGTCAGTGTTGGACAGTTGGCAAAATCATCTTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTGCTGTTAGGGTTGTCAGTGTTGGACAGTTGGCAAAATCATCTTGG  288

seq1  GACCTTAAAGCTGGCCCAGGGTCACAGGCAGTGCCACCGTTCCAGTGCAG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAAAGCTGGCCCAGGGTCACAGGCAGTGCCACCGTTCCAGTGCAG  338

seq1  GCTGTGTGTCCTGTGTGAAGGTTGCCCTTAAGTACAAGTTGGAATGGCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGTCCTGTGTGAAGGTTGCCCTTAAGTACAAGTTGGAATGGCTC  388

seq1  TGTGTGACAGGGCCCTCTACACCCATCCACACTTTTGAAAAGTGCGGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACAGGGCCCTCTACACCCATCCACACTTTTGAAAAGTGCGGATT  438

seq1  GAGCAGTGCCTTTCTTCAGGGAATCTCTAAAGAGCCCATGCACGTCAAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGCCTTTCTTCAGGGAATCTCTAAAGAGCCCATGCACGTCAAAG  488

seq1  AGTATGCAGTCTGTAGTGACAAGGCCCCGGGCCTCCGGACTCTACCTGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCAGTCTGTAGTGACAAGGCCCCGGGCCTCCGGACTCTACCTGCT  538

seq1  TCCTAGATCCTCTCTGCTGACTGTCTGTCTTACCCACTGGTTTTTAGCAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGATCCTCTCTGCTGACTGTCTGTCTTACCCACTGGTTTTTAGCAC  588

seq1  CTAGATAAACTGCGATTTGAAAGACCTTGCCTTTGCATCTGTACTGTTGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAACTGCGATTTGAAAGACCTTGCCTTTGCATCTGTACTGTTGA  638

seq1  CCCCAGACTTGGGCCTCTTTGTGACTTTCCACCATTACAAGTTGGCTTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACTTGGGCCTCTTTGTGACTTTCCACCATTACAAGTTGGCTTAA  688

seq1  AACAGCCATAAAGAAAGTTTCTTGTTTACTTACTGTCTGTCTGAGGGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCATAAAGAAAGTTTCTTGTTTACTTACTGTCTGTCTGAGGGCAC  738

seq1  TGGGACAAAAGCATGCCAAGGAAATACAAGACATAATACAGAGCTGAAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACAAAAGCATGCCAAGGAAATACAAGACATAATACAGAGCTGAAGA  788

seq1  AGAGGGAAAAGTCAAATTGATCATTTCTGTCAAAACAGTCTTTAATCATC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAAAGTCAAATTGATCATTTCTGTCAAAACAGTCTTTAATCATC  838

seq1  TTCCTGCCTGGCTTCTCTAGGATCCATTTAGTTGACTGTCTTTATCTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCTGGCTTCTCTAGGATCCATTTAGTTGACTGTCTTTATCTTGT  888

seq1  TGATGCAGTCAAAGTCTTTTTGGGTTTTATTCATTTGTTTACAGGCCTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCAGTCAAAGTCTTTTTGGGTTTTATTCATTTGTTTACAGGCCTCT  938

seq1  CAACATCTACCTCAACTGGATGCTGAGGTTCTGATCCACATTCATTGGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTACCTCAACTGGATGCTGAGGTTCTGATCCACATTCATTGGGC  988

seq1  ATGCTTTCCACTCTGCTGGCGTCTGGGAAAGTCTTAGACCTTAGATCAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCACTCTGCTGGCGTCTGGGAAAGTCTTAGACCTTAGATCAAG  1038

seq1  AGAGCAGTTCAGATCTGGGGAGGTGGCCCTGTTGATAAAGTATTTGCTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTTCAGATCTGGGGAGGTGGCCCTGTTGATAAAGTATTTGCTAT  1088

seq1  GTGGCCATGAGGACTTGAGTTTGAATTC  1125
      ||||||||||||||||||||||||||||
seq2  GTGGCCATGAGGACTTGAGTTTGAATTC  1116