BAC Information

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BAC

Clone NameB6Ng01-236A20
Chromosome19 (Build37)
Map Location 40,310,398 - 40,416,483
singlet/doubletdoublet
Overlap genePdlim1, LOC435599, Sorbs1, A930028N01Rik
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923
Downstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236A20.bB6Ng01-236A20.g
ACCGA047368GA047369
length1,1141,071
definitionB6Ng01-236A20.b B6Ng01-236A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,310,398 - 40,311,507)(40,415,419 - 40,416,483)
sequence
gaattctaacactcatgaaaatacaacaagaagaatcaatcgccacagtt
ttgagattcctctcacaactattgtaatcacgcctgtgtttatcccacac
ccatcgattaactcaaatgcttaaaactgaaacataaaaagggaaaccag
gtttgaaaaaaaaaatgtaagtaggaatttttagcctctagggataggca
gacttaaaacaccccaagaatgactggtaaaatgggaacctccttcaaag
tcacatttgctcggctgaggcacatccctcggtaagagttagtattggct
ctgcttttccggtttattttttagtttctgttttggagacaagatctcac
tatgtaagcaatgttgaccttaaactcctgatcctcctgcttcagcctcc
agagtgctgggatgcccggatgcgtcaccacacccgaccctgctaaaatg
ttgggaacgttgtttgtctgcttctactagtcagaatctgtccaaattcc
ccctaagactcttacatcattcagttgtattatatatttgttgtttttct
agtttttttgttttgttttgttttactaagttctagttttaagccatccc
agttaggaaaaaatatttgctgttgtttcagtcttaagatgtgttttaag
tctcacttacagtctctcttaagagacaacttcacatgtacctgaaaagt
gactttgatttttttttttttaaagcttgatctttcatttatggtgagta
tattgacagttttcttatctcattattgtgaggcataccatgtatttctg
ttcattatgcacccccaccatggtgatgcgaggcactagaatcagccaca
gctctcacacaatagcactgtacaggctgggttggcttcgcctccctttc
ctcctattctcctgactctctggcaaacacaggtcttagtctgttgagaa
gtaacagtaaatggtaatattataatgtcagtgttcacatgttttcctgc
tagcataaaagaaaacaacgtctgatctatgtacatctaatatcctgtgt
agaatgtcagtctattttgctgaatgtcgcagtagtgccagaaccttccc
ttgcatttacactg
gaattctgtgacaaagtaagaaaggtgtgggggtaacacgtgttaaaaag
tctacttccctgacagccactgagtgtattaagaggtaaaaatgaacggt
cgctgctctgtcattgactttgcagagcacatacctcacatatgtggaag
acctgctgttgacaggggaaacacagtcagagccagttcttttcttttgg
agaggtagtacagagaccaagaggacccaccttttactctccccttccct
tcagtttctacagaaattgatttgatgtctagccacaaactcaaggcaat
gtttctcaatagtaatccctcgaatgtgtctgtagaattaacggacatga
aacttgcatgcaatctgtggggcttttaatgatctcctgtgtctgatctc
cccggaggtcatagcatggtagatctcaagtgtacacaggcagagtcaga
gaatccactctgtgtgagagaagttcagagttagaagtttctggaagttt
gcttagctctcactgcacacaaacccttgggaagcctacagcattctcct
ggcagattttcagcgctctgattgtccatgaaggggttaaagaacaaaca
tcgtgacctctgacctgccagggggagggggcggagcctgcctctagcgt
tacttctgccgcctaactctacttacatttatgaaaggccagttgagctg
caagcatgaaatggtcacagcactgtctgaattcctactctagatgccaa
tgaatcctactgtggatgccgctgccacacaccagagggtcaccctttta
ggtcagcctctactggacagacttacagatttacacatttattaacatgc
aatgatttttttctatagtaggaaagattattttaaaaaatgtgaaaatc
ttccagggttcagttcttttgtttggaagagatcaagaaaagaattagag
ttttaattttgctttaaattccgtattgatgctttcctcccctccccccc
cccccctttaagtcaatttttaagaatgagacttcaggcttgattgctct
gaaacttatacttccttagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_40310398_40311507
seq2: B6Ng01-236A20.b_40_1153

seq1  GAATTCTAACACTCATGAAAATACAACAAGAAGAATCAATCGCCACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACACTCATGAAAATACAACAAGAAGAATCAATCGCCACAGTT  50

seq1  TTGAGATTCCTCTCACAACTATTGTAATCACGCCTGTGTTTATCCCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTCCTCTCACAACTATTGTAATCACGCCTGTGTTTATCCCACAC  100

seq1  CCATCGATTAACTCAAATGCTTAAAACTGAAACATAAAAAGGGAAACCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGATTAACTCAAATGCTTAAAACTGAAACATAAAAAGGGAAACCAG  150

seq1  GTTTGAAAAAAAAAATGTAAGTAGGAATTTTTAGCCTCTAGGGATAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAAAAAAAAATGTAAGTAGGAATTTTTAGCCTCTAGGGATAGGCA  200

seq1  GACTTAAAACACCCCAAGAATGACTGGTAAAATGGGAACCTCCTTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAACACCCCAAGAATGACTGGTAAAATGGGAACCTCCTTCAAAG  250

seq1  TCACATTTGCTCGGCTGAGGCACATCCCTCGGTAAGAGTTAGTATTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTGCTCGGCTGAGGCACATCCCTCGGTAAGAGTTAGTATTGGCT  300

seq1  CTGCTTTTCCGGTTTATTTTTTAGTTTCTGTTTTGGAGACAAGATCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTCCGGTTTATTTTTTAGTTTCTGTTTTGGAGACAAGATCTCAC  350

seq1  TATGTAAGCAATGTTGACCTTAAACTCCTGATCCTCCTGCTTCAGCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGCAATGTTGACCTTAAACTCCTGATCCTCCTGCTTCAGCCTCC  400

seq1  AGAGTGCTGGGATGCCCGGATGCGTCACCACACCCGACCCTGCTAAAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCTGGGATGCCCGGATGCGTCACCACACCCGACCCTGCTAAAATG  450

seq1  TTGGGAACGTTGTTTGTCTGCTTCTACTAGTCAGAATCTGTCCAAATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACGTTGTTTGTCTGCTTCTACTAGTCAGAATCTGTCCAAATTCC  500

seq1  CCCTAAGACTCTTACATCATTCAGTTGTATTATATATTTGTTGTTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGACTCTTACATCATTCAGTTGTATTATATATTTGTTGTTTTTCT  550

seq1  AGTTTTTTTGTTTTGTTTTGTTTTACTAAGTTCTAGTTTTAAGCCATCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTTGTTTTGTTTTGTTTTACTAAGTTCTAGTTTTAAGCCATCCC  600

seq1  AGTTAGGAAAAAATATTTGCTGTTGTTTCAGTCTTAAGATGTGTTTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGAAAAAATATTTGCTGTTGTTTCAGTCTTAAGATGTGTTTTAAG  650

seq1  TCTCACTTACAGTCTCTCTTAAGAGACAACTTCACATGTACCTGAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTACAGTCTCTCTTAAGAGACAACTTCACATGTACCTGAAAAGT  700

seq1  GACTTTGATTTTTTTTTTTTTAAAGCTTGATCTTTCATTTATGGTGAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGATTTTTTTTTTTTTAAAGCTTGATCTTTCATTTATGGTGAGTA  750

seq1  TATTGACAGTTTTCTTATCTCATTATTGTGAGGCATACCATGTATTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACAGTTTTCTTATCTCATTATTGTGAGGCATACCATGTATTTCTG  800

seq1  TTCATTATGCACCCCCACCATGGTGATGCGAGGCACTAGAATCAGCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATGCACCCCCACCATGGTGATGCGAGGCACTAGAATCAGCCACA  850

seq1  GCTCTCACACAATAGCACTGTACAGGCT-GGTTGGCTTCGCCTCCC-TTC  898
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  GCTCTCACACAATAGCACTGTACAGGCTGGGTTGGCTTCGCCTCCCTTTC  900

seq1  CTCCTATTCTCCTGACTCTCTGGCAAACACAGGTC-TAGTCTGTTGAGAA  947
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCCTATTCTCCTGACTCTCTGGCAAACACAGGTCTTAGTCTGTTGAGAA  950

seq1  GTAACAGTAAATGGT-ATATTATAATGTCAGTGTTCACATG-TTTCCTGC  995
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GTAACAGTAAATGGTAATATTATAATGTCAGTGTTCACATGTTTTCCTGC  1000

seq1  TAGCATAAA--GAAACAACGTCTGATTCTATGTACATCTTATATCCTGTG  1043
      |||||||||   ||||||||||||| ||||||||||||| ||||||||||
seq2  TAGCATAAAAGAAAACAACGTCTGA-TCTATGTACATCTAATATCCTGTG  1049

seq1  TAGATTGTCAGTCTATTTTTGCTGGATGTCGCAGTTAGTGCCAGACCCTT  1093
      |||| |||||||||| |||||||| ||||||||| |||||||||| ||||
seq2  TAGAATGTCAGTCTA-TTTTGCTGAATGTCGCAG-TAGTGCCAGAACCTT  1097

seq1  CCCTTGCATTTACACTG  1110
      |||||||||||||||||
seq2  CCCTTGCATTTACACTG  1114

seq1: chr19_40415419_40416483
seq2: B6Ng01-236A20.g_66_1136 (reverse)

seq1  GACT-AGGAAGTATAAGTTTCAAGAGCAAATCAACCCTTGAGTCTCAATA  49
      |||| |||||||||||||||| ||||| |||||| |||  ||||||| | 
seq2  GACTAAGGAAGTATAAGTTTC-AGAGC-AATCAAGCCTGAAGTCTCATTC  48

seq1  CTAAAAATTTTAAACTAAAAGGGGGGGGGGGGAGGGGAGGGAAGCATCAA  99
       ||||||  || |  |||| |||||||||||||||||||| |||||||||
seq2  TTAAAAA--TTGACTTAAAGGGGGGGGGGGGGAGGGGAGGAAAGCATCAA  96

seq1  TAACGAATTTAAA-CAAATTAAAAACTCTAATTC-TTTCTTGTTCTCTT-  146
      ||  ||||||||| |||| | ||||||||||||| ||||||| |||||| 
seq2  TACGGAATTTAAAGCAAAATTAAAACTCTAATTCTTTTCTTGATCTCTTC  146

seq1  CAAACAAA--GACTG-ACCCTGG-AGATTTTCACATTTTTT-AAATAGTC  191
      ||||||||   |||| ||||||| ||||||||||||||||| ||||| ||
seq2  CAAACAAAAGAACTGAACCCTGGAAGATTTTCACATTTTTTAAAATAATC  196

seq1  TTTCCTACTATAGAAAAAAATCATTGCATGTTAATAAATGTGTAAATCTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTACTATAGAAAAAAATCATTGCATGTTAATAAATGTGTAAATCTG  246

seq1  TAAGTCTGTCCAGTAGAGGCTGACCTAAAAGGGTGACCCTCTGGTGTGTG  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGTCCAGTAGAGGCTGACCTAAAAGGGTGACCCTCTGGTGTGTG  296

seq1  GCAGCGGCATCCACAGTAGGATTCATTGGCATCTAGAGTAGGAATTCAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGGCATCCACAGTAGGATTCATTGGCATCTAGAGTAGGAATTCAGA  346

seq1  CAGTGCTGTGACCATTTCATGCTTGCAGCTCAACTGGCCTTTCAT-AATG  390
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CAGTGCTGTGACCATTTCATGCTTGCAGCTCAACTGGCCTTTCATAAATG  396

seq1  TAAGTAGAGTTAGGCGGCAGAAGTAACGCTAGAGGCAGGCTCCGCCCCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAGTTAGGCGGCAGAAGTAACGCTAGAGGCAGGCTCCGCCCCCT  446

seq1  CCCCCTGGCAGGTCAGAGGTCACGATGTTTGTTCTTTAACCCCTTCATGG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGGCAGGTCAGAGGTCACGATGTTTGTTCTTTAACCCCTTCATGG  496

seq1  ACAATCAGAGCGCTGAAAATCTGCCAGGAGAATGCTGTAGGCTTCCCAAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGAGCGCTGAAAATCTGCCAGGAGAATGCTGTAGGCTTCCCAAG  546

seq1  GGTTTGTGTGCAGTGAGAGCTAAGCAAACTTCCAGAAACTTCTAACTCTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGTGCAGTGAGAGCTAAGCAAACTTCCAGAAACTTCTAACTCTG  596

seq1  AACTTCTCTCACACAGAGTGGATTCTCTGACTCTGCCTGTGTACACTTGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTCACACAGAGTGGATTCTCTGACTCTGCCTGTGTACACTTGA  646

seq1  GATCTACCATGCTATGACCTCCGGGGAGATCAGACACAGGAGATCATTAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTACCATGCTATGACCTCCGGGGAGATCAGACACAGGAGATCATTAA  696

seq1  AAGCCCCACAGATTGCATGCAAGTTTCATGTCCGTTAATTCTACAGACAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCACAGATTGCATGCAAGTTTCATGTCCGTTAATTCTACAGACAC  746

seq1  ATTCGAGGGATTACTATTGAGAAACATTGCCTTGAGTTTGTGGCTAGACA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGAGGGATTACTATTGAGAAACATTGCCTTGAGTTTGTGGCTAGACA  796

seq1  TCAAATCAATTTCTGTAGAAACTGAAGGGAAGGGGAGAGTAAAAGGTGGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAATTTCTGTAGAAACTGAAGGGAAGGGGAGAGTAAAAGGTGGG  846

seq1  TCCTCTTGGTCTCTGTACTACCTCTCCAAAAGAAAAGAACTGGCTCTGAC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGTCTCTGTACTACCTCTCCAAAAGAAAAGAACTGGCTCTGAC  896

seq1  TGTGTTTCCCCTGTCAACAGCAGGTCTTCCACATATGTGAGGTATGTGCT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCCCCTGTCAACAGCAGGTCTTCCACATATGTGAGGTATGTGCT  946

seq1  CTGCAAAGTCAATGACAGAGCAGCGACCGTTCATTTTTACCTCTTAATAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGTCAATGACAGAGCAGCGACCGTTCATTTTTACCTCTTAATAC  996

seq1  ACTCAGTGGCTGTCAGGGAAGTAGACTTTTTAACACGTGTTACCCCCACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGTGGCTGTCAGGGAAGTAGACTTTTTAACACGTGTTACCCCCACA  1046

seq1  CCTTTCTTACTTTGTCACAGAATTC  1065
      |||||||||||||||||||||||||
seq2  CCTTTCTTACTTTGTCACAGAATTC  1071