BAC Information

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BAC

Clone NameB6Ng01-236F15
Chromosome19 (Build37)X (Build37)
Map Location 11,999,837 - 12,000,018148,646,834 - 148,647,847
singlet/doubletsingletsinglet
Overlap geneAV312086
Upstream geneGpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420
Downstream geneOsbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236F15.bB6Ng01-236F15.g
ACCGA047591GA047592
length2341,018
definitionB6Ng01-236F15.b B6Ng01-236F15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,999,837 - 12,000,018)(148,646,834 - 148,647,847)
sequence
gaattccatatacatgtgcaatagaatgattgtatttagaaatcaattta
gccaggtgtggtggtgcatgcctttaatcccagcactcgggaggcagagg
caggcagatttctgagttcgaggccagcctggtctacaaagtgagttcca
ggacagccagggctacacagagaaaccctgtctcaaaaaaaaaaaaaaaa
aaaaagaaagaaagaaagaaagaaagaaagaaag
gaattcaagggcagactggtctatgtagtgagttccaagacagcctggac
ctacactgagagaccctgtctcaaaaacaaaacaaacaaaacaaaacaaa
acataaccaaacaaaaattcaggattgataaatcccatcttaagagacat
ttgtaaggctcagagtcagtgaatatgaagtatctagctctagcctctga
gatctaggcatcgtaataagtgacaagatcagcaataaatgatagcactc
aagaatctgggtatgtaagtcagtgatagagcatttgcctgttgttatga
ctatgagtctctggtttctgtgcccagtactgaagaaaacaggctactga
ggtagatccttctactggcattttcattttgtagatgacaaaattctggg
gcattagagtaagttagctgaatcagagtttaaacttgactgcatctaac
tccgtattatctatgctcagctctaaatgctttgaagatcagacagagct
gggtccaaatcttgctccaccctttggggcttttctcaggagaggtgggg
gaagatttgctttgaagccagatgattgtttttcatccgggctttaccat
tcaccagctctattgcctgggcaagtttccttaccacttcaagccttcat
tatatcctgtgtaaaataggactgcttgggagttagagatgtggttcagt
ggtagagcatatgcttagcatgctcaaggcccaaggctcaatcctcagca
ctacaggcagaaagaaacggggaaatagcatttatgcagtgcggtgatga
attgcatgagacaatgcacttaaatctcccagaaaagttccaagaaggta
gtggttatgatttttcatggtggtgtagagaaaatgaagaggacagacct
ccaaatgctaaagaaaagggtttgtgatggcaactttgggtgggtaggtg
gaaattgttggcaacctgagtcccggacttgaccctttcttgtctcacag
ccagcggactggtgtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_11999837_12000018
seq2: B6Ng01-236F15.b_90_278 (reverse)

seq1  ----CTTT-TTTCTTT-TTTCTTTCTTT-TTTCTTTTTTTTTGGTTTTTC  43
          |||| ||||||| ||||||||||| ||| |||||||||  ||||| 
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTT  50

seq1  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTA  93
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTA  100

seq1  GACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGT  143
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGT  150

seq1  GCTGGGATCAAAGGCGTGCGCCACCACACCTGGCTAAAT  182
      |||||||| |||||| ||| |||||||||||||||||||
seq2  GCTGGGATTAAAGGCATGCACCACCACACCTGGCTAAAT  189

seq1: chrX_148646834_148647847
seq2: B6Ng01-236F15.g_69_1086

seq1  GAATTCAAGGGCAGACTGGTCTATGTAGTGAGTTCCAAGACAGCCTGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGGCAGACTGGTCTATGTAGTGAGTTCCAAGACAGCCTGGAC  50

seq1  CTACACTGAGAGACCCTGTCTCAAAAACAAAACAAACAAAACAAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGAGAGACCCTGTCTCAAAAACAAAACAAACAAAACAAAACAAA  100

seq1  ACATAACCAAACAAAAATTCAGGATTGATAAATCCCATCTTAAGAGACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCAAACAAAAATTCAGGATTGATAAATCCCATCTTAAGAGACAT  150

seq1  TTGTAAGGCTCAGAGTCAGTGAATATGAAGTATCTAGCTCTAGCCTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGGCTCAGAGTCAGTGAATATGAAGTATCTAGCTCTAGCCTCTGA  200

seq1  GATCTAGGCATCGTAATAAGTGACAAGATCAGCAATAAATGATAGCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGCATCGTAATAAGTGACAAGATCAGCAATAAATGATAGCACTC  250

seq1  AAGAATCTGGGTATGTAAGTCAGTGATAGAGCATTTGCCTGTTGTTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTGGGTATGTAAGTCAGTGATAGAGCATTTGCCTGTTGTTATGA  300

seq1  CTATGAGTCTCTGGTTTCTGTGCCCAGTACTGAAGAAAACAGGCTACTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTCTCTGGTTTCTGTGCCCAGTACTGAAGAAAACAGGCTACTGA  350

seq1  GGTAGATCCTTCTACTGGCATTTTCATTTTGTAGATGACAAAATTCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCCTTCTACTGGCATTTTCATTTTGTAGATGACAAAATTCTGGG  400

seq1  GCATTAGAGTAAGTTAGCTGAATCAGAGTTTAAACTTGACTGCATCTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGAGTAAGTTAGCTGAATCAGAGTTTAAACTTGACTGCATCTAAC  450

seq1  TCCGTATTATCTATGCTCAGCTCTAAATGCTTTGAAGATCAGACAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATTATCTATGCTCAGCTCTAAATGCTTTGAAGATCAGACAGAGCT  500

seq1  GGGTCCAAATCTTGCTCCACCCTTTGGGGCTTTTCTCAGGAGAGGTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAAATCTTGCTCCACCCTTTGGGGCTTTTCTCAGGAGAGGTGGGG  550

seq1  GAAGATTTGCTTTGAAGCCAGATGATTGTTTTTCATCCGGGCTTTACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTGCTTTGAAGCCAGATGATTGTTTTTCATCCGGGCTTTACCAT  600

seq1  TCACCAGCTCTATTGCCTGGGCAAGTTTCCTTACCACTTCAAGCCTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGCTCTATTGCCTGGGCAAGTTTCCTTACCACTTCAAGCCTTCAT  650

seq1  TATATCCTGTGTAAAATAGGACTGCTTGGGAGTTAGAGATGTGGTTCAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTGTGTAAAATAGGACTGCTTGGGAGTTAGAGATGTGGTTCAGT  700

seq1  GGTAGAGCATATGCTTAGCATGCTCAAGGCCCAAGGCTCAATCCTCAGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGCATATGCTTAGCATGCTCAAGGCCCAAGGCTCAATCCTCAGCA  750

seq1  CTACAGGCAGAAAGAAACGGGGAAATAGCATTTATGCAGTGCGGTGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGCAGAAAGAAACGGGGAAATAGCATTTATGCAGTGCGGTGATGA  800

seq1  ATTGCATGAGACAATGCACTTAAATCTCCCAGAAAAGTTCCAAGAAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGAGACAATGCACTTAAATCTCCCAGAAAAGTTCCAAGAAGGTA  850

seq1  GTGGTTATGATTTTTCATGGTGGTGTTAGAGAAAATGAAGAGGACAGA-C  899
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  GTGGTTATGATTTTTCATGGTGGTG-TAGAGAAAATGAAGAGGACAGACC  899

seq1  TCCAAATGCTAAAGAAAAGGGTTTGTGATGGCAAC-TTGGGTGGGTAGGT  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCAAATGCTAAAGAAAAGGGTTTGTGATGGCAACTTTGGGTGGGTAGGT  949

seq1  GGAAATTGTTGGC-ACCTGAGT-CCGGACTTGACCC-TTCTTGTCTCACA  995
      ||||||||||||| |||||||| ||||||||||||| |||||||||||||
seq2  GGAAATTGTTGGCAACCTGAGTCCCGGACTTGACCCTTTCTTGTCTCACA  999

seq1  GCCAGCGGTACT-GTGTCTG  1014
      |||||||| ||| |||||||
seq2  GCCAGCGG-ACTGGTGTCTG  1018