BAC Information

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BAC

Clone NameB6Ng01-236M08
Chromosome19 (Build37)
Map Location 20,524,795 - 20,525,993
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik
Downstream geneE030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287, LOC100042294, LOC100041602, LOC100041613, Zfand5, Gda
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M08.bB6Ng01-236M08.g
ACCGA047908GA047909
length6651,192
definitionB6Ng01-236M08.b B6Ng01-236M08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaactgaggaatctcagatggttgagaatcccctaaataaaac
atcaaagtccttagtgatcagagaaatgcaaatcaaaacgaccctgagat
tccaccttttaccaatcagaatgtctaagatcaaaacctcaggtgacagt
acatgttggtgaagatgtggagaaaaaggaaaactcctccattgctggtg
ggattgcaaactggaacaagcactctggaaatcactctggaggttcctca
gacaattagaaagatgtctgcctaaagactcagcaataacactcttggga
atatacccaaaagatgtcccaccttgccacaggggcacatgttccactat
gttcatagcggccttgtttgtgatagcctaagctggaaacaaccaagatg
tcccatgacagaagaatggatacagaaaatgtggttcatttacacaatgg
aatattactcagctaagaacaagaacatcctgagttttacagcataccag
gaatacaatccagagaactcaaaaagttcaacactgaagggcccaagtga
ggacacctcagtcccacttgggaggggtaaaaaagcaatcacaaggcagg
agggaaaaatagacctgggagggatgggaaggagagaggggaacatgatc
tagtgttggatgggg

gaattctggcccatgtaaggacacaccccttttttgtttgaagatctaga
gaaaggtgggtgtggaggaagttccaggctcagttggctcaaggtcaagg
tcaagggagtcaaggtccttgtttgttttccttgggagacttattttcca
tcctcagttcatggatgacaaaagagagcaggagttgttatcgtccctaa
aacactatagagttatgaaatcgcttgatatcagtaaacgaggttagatc
taatagatgtgccaccaaacgatgttttatttttactgaaacacggtgtt
ctcaaatgtttgttttttaaccaaggccattaatgatttgtcagtccgat
atgggatctgtgatgagagtgaaaatctcttttgttcatcagacctcata
ttctcccagcgtagaacacttgagacagtaccttctttatttcagtgagt
gcttgagctaggacagtgcctcttgattcccactctgaaagccccaatgt
gattctttgctgaagtgcacgcacacatggagataacatgatattaaaat
tcagagatacgtcctttccctgattcccagctcatagaattaccacatag
taaagatattcgcttgagtttttcttttaggagacattgaaattataaat
actgggtaaaaattttaaagtaaacttttttttcagttcaaatttcatat
aaatatgtccaaatctatttaggtggtcttttagtccaatttagactagg
aaaaatgttgtttgatagaaccttgttcatattttacccatttgattaca
gctaagatgtctttcctaaacttacaagtaccactgaaatctaaacacct
tttgctctgttttcatcaagaaaatacaaaactaaacagactcactgaca
tatgtatctataactttatatctctatgatgcataatatatatcacatat
catgtatgtatgtgtgtttaaacataacaattaaataaatagggccatga
gttttaaaaggaattgagatgggtcatttaaaggtttggagggagagaaa
gagaaattgtatattataatcatattaaaacaatcagaatgaactatgcc
aggatgtgtgcttgccccatggagtctagccatgtagttgcagatagaat
ctgtatgttcaagaaaagctctccaccttataaaaaatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_20524795_20525993
seq2: B6Ng01-236M08.g_66_1257 (reverse)

seq1  CAACA-TTTTTATA--GCTGAGA-CTATTCTTG-ACATACAGATTTTCCT  45
      ||||| ||||||||  |  |||| || |||||| |||||||||||   ||
seq2  CAACATTTTTTATAAGGTGGAGAGCTTTTCTTGAACATACAGATT---CT  47

seq1  ATTCCTGCAACTTACAT-GCTAGACT-CAT-GGGCAAGCACCACAATTCC  92
      ||  ||||||| ||||| |||||||| ||| ||||||||| ||||  |||
seq2  AT--CTGCAAC-TACATGGCTAGACTCCATGGGGCAAGCA-CACA--TCC  91

seq1  TGGCCTAG-TCTATCTGATTGTTTTTTAATTATGATTATAATTATACAAT  141
      |||| ||| ||  ||||||||||||   | ||||||||||| ||||||||
seq2  TGGCATAGTTCATTCTGATTGTTTT---AATATGATTATAA-TATACAAT  137

seq1  TTCCTCTTTCTTCTCCCTCCAAACCCTTAAATGACCCATCTCAATTCCTT  191
      || ||||||| |||||||||||||| ||||||||||||||||||||||||
seq2  TT-CTCTTTC-TCTCCCTCCAAACCTTTAAATGACCCATCTCAATTCCTT  185

seq1  TTAAAACTCATGGCCCTATTTTATTTAATTGTTATTGTTTAAACACACAT  241
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TTAAAACTCATGGCCCTA-TTTATTTAATTGTTA-TGTTTAAACACACAT  233

seq1  ACATACATGATATGTGATATATA-TATGCATCATAGAGATATAAAGTTAT  290
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACATACATGATATGTGATATATATTATGCATCATAGAGATATAAAGTTAT  283

seq1  AGATACATATGTCAGTGAGTCTGTTTAGTTTTGTATTTTCTTGATGAAAA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACATATGTCAGTGAGTCTGTTTAGTTTTGTATTTTCTTGATGAAAA  333

seq1  CAGAGCAAAAGGTGTTTAGATTTCAGTGGTACTTGTAAGTTTAGGAAAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAAAAGGTGTTTAGATTTCAGTGGTACTTGTAAGTTTAGGAAAGA  383

seq1  CATCTTAGCTGTAATCAAATGGGTAAAATATGAACAAGGTTCTATCAAAC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTAGCTGTAATCAAATGGGTAAAATATGAACAAGGTTCTATCAAAC  433

seq1  AACATTTTTCCTAGTCTAAATTGGACTAAAAGACCACCTAAATAGATTTG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTCCTAGTCTAAATTGGACTAAAAGACCACCTAAATAGATTTG  483

seq1  GACATATTTATATGAAATTTGAACTGAAAAAAAAGTTTACTTTAAAATTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATTTATATGAAATTTGAACTGAAAAAAAAGTTTACTTTAAAATTT  533

seq1  TTACCCAGTATTTATAATTTCAATGTCTCCTAAAAGAAAAACTCAAGCGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCAGTATTTATAATTTCAATGTCTCCTAAAAGAAAAACTCAAGCGA  583

seq1  ATATCTTTACTATGTGGTAATTCTATGAGCTGGGAATCAGGGAAAGGACG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTACTATGTGGTAATTCTATGAGCTGGGAATCAGGGAAAGGACG  633

seq1  TATCTCTGAATTTTAATATCATGTTATCTCCATGTGTGCGTGCACTTCAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTGAATTTTAATATCATGTTATCTCCATGTGTGCGTGCACTTCAG  683

seq1  CAAAGAATCACATTGGGGCTTTCAGAGTGGGAATCAAGAGGCACTGTCCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAATCACATTGGGGCTTTCAGAGTGGGAATCAAGAGGCACTGTCCT  733

seq1  AGCTCAAGCACTCACTGAAATAAAGAAGGTACTGTCTCAAGTGTTCTACG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAAGCACTCACTGAAATAAAGAAGGTACTGTCTCAAGTGTTCTACG  783

seq1  CTGGGAGAATATGAGGTCTGATGAACAAAAGAGATTTTCACTCTCATCAC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAATATGAGGTCTGATGAACAAAAGAGATTTTCACTCTCATCAC  833

seq1  AGATCCCATATCGGACTGACAAATCATTAATGGCCTTGGTTAAAAAACAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCCATATCGGACTGACAAATCATTAATGGCCTTGGTTAAAAAACAA  883

seq1  ACATTTGAGAACACCGTGTTTCAGTAAAAATAAAACATCGTTTGGTGGCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAGAACACCGTGTTTCAGTAAAAATAAAACATCGTTTGGTGGCA  933

seq1  CATCTATTAGATCTAACCTCGTTTACTGATATCAAGCGATTTCATAACTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATTAGATCTAACCTCGTTTACTGATATCAAGCGATTTCATAACTC  983

seq1  TATAGTGTTTTAGGGACGATAACAACTCCTGCTCTCTTTTGTCATCCATG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTTTTAGGGACGATAACAACTCCTGCTCTCTTTTGTCATCCATG  1033

seq1  AACTGAGGATGGAAAATAAGTCTCCCAAGGAAAACAAACAAGGACCTTGA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAGGATGGAAAATAAGTCTCCCAAGGAAAACAAACAAGGACCTTGA  1083

seq1  CTCCCTTGACCTTGACCTTGAGCCAACTGAGCCTGGAACTTCCTCCACAC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTGACCTTGACCTTGAGCCAACTGAGCCTGGAACTTCCTCCACAC  1133

seq1  CCACCTTTCTCTAGATCTTCAAACAAAAAAGGGGTGTGTCCTTACATGGG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTCTCTAGATCTTCAAACAAAAAAGGGGTGTGTCCTTACATGGG  1183

seq1  CCAGAATTC  1199
      |||||||||
seq2  CCAGAATTC  1192


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