BAC Information

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BAC

Clone NameB6Ng01-236M12
Chromosome19 (Build37)
Map Location 22,412,978 - 22,547,655
singlet/doubletdoublet
Overlap geneTrpm3, EG433230
Upstream geneGda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
Downstream geneKlf9, Smc5, Mamdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236M12.bB6Ng01-236M12.g
ACCGA047916GA047917
length1,180935
definitionB6Ng01-236M12.b B6Ng01-236M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,546,456 - 22,547,655)(22,412,978 - 22,413,903)
sequence
gaattcttcaaaacttctctgaccttggaatgagccactcagaacttttt
gataccactgacatttgcctagaaacaaatacattccccacaggaaggac
gtcaaccacatcccagttattcagcttatgagttcctgaatgttaggacc
taaccatatatgaaatggaagttgtaagaaggcagcaggtgcactccagg
agggacgcacaagtgacagagtaatcaatttatgtctttggagggcattt
ccaacagatacaatattttcagcttcatttcatcgaatagacatgatgcc
ttggatttaataatctgccaaatatcacaggtaacatagaaacggagact
ggtggcagtggtgggatagttctgataagaaagctctttaatccatccag
gattcccaagaatatcttgctatagaggaagcagaaaggtgtaagtgcat
gcttcatgcctgcatttttcacatattcttgtcaggggaatgtcctagag
cagagataactctatagtcaacagcaggacccaggtaacatgtttactta
tctactattagccctcgattacatctggtgccctgtctacaaactcaacc
ctaaatcaaactataatgaattaaaatgaaagacaactgaaaacaagcca
tagaaaaatcaacagttcacagtgggaacccagtggcctcctaacattaa
tttgtgtagtgtacagaaatcgaagaaatttatttttgcattatcagctt
gacagaggcttttaacgagagataaaggcatagttacgttcaggcaagcc
aggctgcccagtgttgagacaagcttcctggttcaaaggcaactacttcc
atccactcttcagttgctctttaaggtgctggtaatgaacatatacagtg
gtgagcgcttgccaataaatcatgccaagattgaatgcaaatatatatac
tgaataaatgtactagtattaggcacatgtgcatagtattaccacaccca
agctttgttaacatgtgatctgcagatcactcactcctctatctcagaat
aggagcatagtgggagaatgtctagtatattctcagtttaaattctatat
acccgccatttctcagaccacatagtcaatagactgtttaatgactatag
gcacaccttccttaatgtgcagaatctgtc
gaattcattccgcatggggtactgcttttagcaccttctgtaaggcagca
agtcatagatggcttaaaacccattagagacgagctgttctgagttacgt
ctactttcctgtgggagaaacttttaacacaatattttaaatctattctt
tgggaatttcatacatggagacattgtattctgattatatccagtgtgcc
ccctcaaacttcccctggcccaccccaacctctcctcttcccaggtataa
cctgaaatcaaatcagtgctacctgtatgtgggtgggtggatgggtcatc
cactgtggcatgggcaccctaccagtgcacacattcccaaaggaaaagga
ttccttccctcccagaaaccactgactacaaatagctactcagcagagga
ggtgagaggtacctgtgagcccctccttcatccatccttgcatgaattct
ttatctgtagagcctcaagtggtttttctttgtaattttttttttttttt
ttttttttttttggctaaggcattctttcaaagcttctgctttcaaaacg
caccaagtgtgtgcttaaaatcttgagagtccttccaaaatgtcaatcct
tgggaggctcgccgccacggcaggctttttaagtgtgtggcagtaactgg
gcgtaacatgtgactgacaccacaaggctctctgtgagtgttaaggttga
atgggaaagtcaagatgacagtatagaaccaagtcatggggtggctggaa
agcagggttgatattaccccgctgcaccttttgaaatcatttaagatcgg
attctggcaaacaacagtgttaaagaaacaaatgcttctgcttatttaaa
tgcaaaggggatgaagtggatgagggtgacatccgatggtcaccgggttg
gttatccacaagctataggacaaccctttctaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_22546456_22547655
seq2: B6Ng01-236M12.b_49_1228 (reverse)

seq1  GACAGA-TCTGCACATTTAGAGAAGTGTGCCTTAATTAGTCATTTTTTAA  49
      |||||| |||||||||| ||  | ||||||||    ||||||    ||||
seq2  GACAGATTCTGCACATTAAGGAAGGTGTGCCT---ATAGTCA----TTAA  43

seq1  ACAGTCTATTGACTATTGTGGTCTGAGAAATGCGGGTTATATAGAATTTT  99
      ||||||||||||||| ||||||||||||||||  || |||||||||||| 
seq2  ACAGTCTATTGACTA-TGTGGTCTGAGAAATGGCGGGTATATAGAATTT-  91

seq1  AAACCTGGAAGAATATAACTAGACATTTCTCCCACTTATGCTCCTTATTC  149
       || |||  ||||||| |||||||| ||||||||| |||||||| |||||
seq2  -AAACTG--AGAATAT-ACTAGACA-TTCTCCCAC-TATGCTCC-TATTC  134

seq1  TGAGGATAGAGGAGTGAGTGATCTTGCAAGATCACATGTTAACAAAGCTT  199
      ||| ||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TGA-GATAGAGGAGTGAGTGATC-TGC-AGATCACATGTTAACAAAGCTT  181

seq1  GGGTGTGGTAAATACTATGCAACATGTGCCTAATACTAGTACATTTATTC  249
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  GGGTGTGGT-AATACTATGC-ACATGTGCCTAATACTAGTACATTTATTC  229

seq1  AGTATATATATTTGCATTCAATCTTGGCATGATTTATTGGCAAGCGCTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATATATTTGCATTCAATCTTGGCATGATTTATTGGCAAGCGCTCA  279

seq1  CCACTGTATATGTTCATTACCAGCACCTTAAAGAGCAACTGAAGAGTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTATATGTTCATTACCAGCACCTTAAAGAGCAACTGAAGAGTGGA  329

seq1  TGGAAGTAGTTGCCTTTGAACCAGGAAGCTTGTCTCAACACTGGGCAGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTAGTTGCCTTTGAACCAGGAAGCTTGTCTCAACACTGGGCAGCC  379

seq1  TGGCTTGCCTGAACGTAACTATGCCTTTATCTCTCGTTAAAAGCCTCTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCCTGAACGTAACTATGCCTTTATCTCTCGTTAAAAGCCTCTGT  429

seq1  CAAGCTGATAATGCAAAAATAAATTTCTTCGATTTCTGTACACTACACAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGATAATGCAAAAATAAATTTCTTCGATTTCTGTACACTACACAA  479

seq1  ATTAATGTTAGGAGGCCACTGGGTTCCCACTGTGAACTGTTGATTTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTTAGGAGGCCACTGGGTTCCCACTGTGAACTGTTGATTTTTCT  529

seq1  ATGGCTTGTTTTCAGTTGTCTTTCATTTTAATTCATTATAGTTTGATTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTTTTCAGTTGTCTTTCATTTTAATTCATTATAGTTTGATTTA  579

seq1  GGGTTGAGTTTGTAGACAGGGCACCAGATGTAATCGAGGGCTAATAGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAGTTTGTAGACAGGGCACCAGATGTAATCGAGGGCTAATAGTAG  629

seq1  ATAAGTAAACATGTTACCTGGGTCCTGCTGTTGACTATAGAGTTATCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAAACATGTTACCTGGGTCCTGCTGTTGACTATAGAGTTATCTCT  679

seq1  GCTCTAGGACATTCCCCTGACAAGAATATGTGAAAAATGCAGGCATGAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGGACATTCCCCTGACAAGAATATGTGAAAAATGCAGGCATGAAG  729

seq1  CATGCACTTACACCTTTCTGCTTCCTCTATAGCAAGATATTCTTGGGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTTACACCTTTCTGCTTCCTCTATAGCAAGATATTCTTGGGAAT  779

seq1  CCTGGATGGATTAAAGAGCTTTCTTATCAGAACTATCCCACCACTGCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGGATTAAAGAGCTTTCTTATCAGAACTATCCCACCACTGCCAC  829

seq1  CAGTCTCCGTTTCTATGTTACCTGTGATATTTGGCAGATTATTAAATCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCGTTTCTATGTTACCTGTGATATTTGGCAGATTATTAAATCCA  879

seq1  AGGCATCATGTCTATTCGATGAAATGAAGCTGAAAATATTGTATCTGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCATGTCTATTCGATGAAATGAAGCTGAAAATATTGTATCTGTTG  929

seq1  GAAATGCCCTCCAAAGACATAAATTGATTACTCTGTCACTTGTGCGTCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCCTCCAAAGACATAAATTGATTACTCTGTCACTTGTGCGTCCC  979

seq1  TCCTGGAGTGCACCTGCTGCCTTCTTACAACTTCCATTTCATATATGGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGTGCACCTGCTGCCTTCTTACAACTTCCATTTCATATATGGTT  1029

seq1  AGGTCCTAACATTCAGGAACTCATAAGCTGAATAACTGGGATGTGGTTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTAACATTCAGGAACTCATAAGCTGAATAACTGGGATGTGGTTGA  1079

seq1  CGTCCTTCCTGTGGGGAATGTATTTGTTTCTAGGCAAATGTCAGTGGTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTCCTGTGGGGAATGTATTTGTTTCTAGGCAAATGTCAGTGGTAT  1129

seq1  CAAAAAGTTCTGAGTGGCTCATTCCAAGGTCAGAGAAGTTTTGAAGAATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGTTCTGAGTGGCTCATTCCAAGGTCAGAGAAGTTTTGAAGAATT  1179

seq1  C  1200
      |
seq2  C  1180

seq1: chr19_22412978_22413903
seq2: B6Ng01-236M12.g_68_1002

seq1  GAATTCATTCCGCATGGGGTACTGCTTTTAGCACCTTCTGTAAGGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCGCATGGGGTACTGCTTTTAGCACCTTCTGTAAGGCAGCA  50

seq1  AGTCATAGATGGCTTAAAACCCATTAGAGACGAGCTGTTCTGAGTTACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAGATGGCTTAAAACCCATTAGAGACGAGCTGTTCTGAGTTACGT  100

seq1  CTACTTTCCTGTGGGAGAAACTTTTAACACAATATTTTAAATCTATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCCTGTGGGAGAAACTTTTAACACAATATTTTAAATCTATTCTT  150

seq1  TGGGAATTTCATACATGGAGACATTGTATTCTGATTATATCCAGTGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTCATACATGGAGACATTGTATTCTGATTATATCCAGTGTGCC  200

seq1  CCCTCAAACTTCCCCTGGCCCACCCCAACCTCTCCTCTTCCCAGGTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACTTCCCCTGGCCCACCCCAACCTCTCCTCTTCCCAGGTATAA  250

seq1  CCTGAAATCAAATCAGTGCTACCTGTATGTGGGTGGGTGGATGGGTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATCAAATCAGTGCTACCTGTATGTGGGTGGGTGGATGGGTCATC  300

seq1  CACTGTGGCATGGGCACCCTACCAGTGCACACATTCCCAAAGGAAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGCATGGGCACCCTACCAGTGCACACATTCCCAAAGGAAAAGGA  350

seq1  TTCCTTCCCTCCCAGAAACCACTGACTACAAATAGCTACTCAGCAGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCCTCCCAGAAACCACTGACTACAAATAGCTACTCAGCAGAGGA  400

seq1  GGTGAGAGGTACCTGTGAGCCCCTCCTTCATCCATCCTTGCATGAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAGGTACCTGTGAGCCCCTCCTTCATCCATCCTTGCATGAATTCT  450

seq1  TTATCTGTAGAGCCTCAAGTGGTTTTTCTTTGTAATTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTAGAGCCTCAAGTGGTTTTTCTTTGTAATTTTTTTTTTTTTTT  500

seq1  TTTTTTTTTTTTGGCTAAGGCATTCTTTCAAAGCTTCTGCTTTCAAAACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTGGCTAAGGCATTCTTTCAAAGCTTCTGCTTTCAAAACG  550

seq1  CACCAAGTGTGTGCTTAAAATCTTGAGAGTCCTTCCAAAATGTCAATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGTGTGTGCTTAAAATCTTGAGAGTCCTTCCAAAATGTCAATCCT  600

seq1  TGGGAGGCTCGCCGCCACGGCAGGCTTTTTAAGTGTGTGGCAGTAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCTCGCCGCCACGGCAGGCTTTTTAAGTGTGTGGCAGTAACTGG  650

seq1  GCGTAACATGTGACTGACACGACAAGGCTCTCTGTGAGTGTTAAGGTTGA  700
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCGTAACATGTGACTGACACCACAAGGCTCTCTGTGAGTGTTAAGGTTGA  700

seq1  ATGGGAAAGTCAAGATGACAGTATAGAACCAAGTCAT-GGTTGGCTGGAA  749
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  ATGGGAAAGTCAAGATGACAGTATAGAACCAAGTCATGGGGTGGCTGGAA  750

seq1  AGCAGGCTTGATATTACCTCGCTGCACCTTT--GAATCAGTTAAGATCGG  797
      |||||| ||||||||||| ||||||||||||   ||||| ||||||||||
seq2  AGCAGGGTTGATATTACCCCGCTGCACCTTTTGAAATCATTTAAGATCGG  800

seq1  ATTCTGGCAAACAACAGTG-TAAAGAAACAAATGC-TCAGCTAATTAGAA  845
      ||||||||||||||||||| ||||||||||||||| || ||| |||  ||
seq2  ATTCTGGCAAACAACAGTGTTAAAGAAACAAATGCTTCTGCTTATTTAAA  850

seq1  TGCAAA-GGGATG-AGGGGATGA-GGTGACATCGGATGGTCA-CAGGTTG  891
      |||||| |||||| || |||||| ||||||||| |||||||| | |||||
seq2  TGCAAAGGGGATGAAGTGGATGAGGGTGACATCCGATGGTCACCGGGTTG  900

seq1  GTTAGCACACAAGCTA-AGGACTAACCTTTCTGACT  926
      |||| | ||||||||| ||||| | ||||||| |||
seq2  GTTATC-CACAAGCTATAGGACAACCCTTTCTAACT  935