BAC Information

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BAC

Clone NameB6Ng01-237C09
Chromosome19 (Build37)
Map Location 25,805,718 - 26,015,661
singlet/doubletdoublet
Overlap geneEG667806
Upstream genePgm5, LOC672195, Foxd4, Cbwd1, Dock8, LOC100042503, Ankrd15, LOC433233, LOC383474, Dmrt1, Dmrt3, Dmrt2
Downstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237C09.bB6Ng01-237C09.g
ACCGA048188GA048189
length5991,060
definitionB6Ng01-237C09.b B6Ng01-237C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,805,718 - 25,806,316)(26,014,790 - 26,015,661)
sequence
gaattcttaattcagtttacacttctgggcccaagtttctcatcaaacaa
ggaaattagactagataattttctttccagtgttaacagggcaaaacaac
acaaaatcaacaagcaaaagtgaaaatcatgaactcttcaataataagca
tttttattaagacattggatgtgtgtgtgtgtgtgtgtgtctgtgtgtct
gtgtgtctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtagatgtgt
gcatgcatacttggcttgttctagagacataatttatgaaaggtggtttt
atagtttagaaaatcaaatgcatatggtctcaatgactgctcaattgtaa
atggactcactatttcctctttggtctactggacaacagtaacaataacc
actataaaatcagaagctttttagtggtttatagaggaaaaaaaaagaac
cctaaaatttattctcagttaaattaaaatgaaacctgaggaaagcattt
gtttaatttgaaaagtatattgcagcacatatttggaaaccatacaattc
atttctcggactgtgataatacactatgccctgacacaggataccacag
gaattcagttttttctttccacccttcagattctggggtccaagctcagg
tcatcaaccttggcaacaactttttttatttgataaaccatcttactggt
tcacaagaggcatttaagtaccctaaataggtaccatcgtgaaggaaatt
tccctaagacattaaaatattaaaacagaaggctggtaaaggtgtctcag
tggtgaacagcactggctggtcttccataggaccgagatttgattcccac
cactcacatagcagctcacaaccatctgcaactcaaattccagggaccca
aatcctttatggcatccatagacaccagacatgggtgtggtacacagaca
tattgcaaaaagaaaaaaactcatatgtgtgtgtgtgtatgtgtgtgtgt
taaagctgcagaagaaagcagtaaaagcagcaatttttgtaaaaagccaa
atcacagatgcaaactcattaaaatatcatcagacttctaagaagaattc
ttaccacccagaacagcagcatagaaggaagtatttcaggccttggaaat
aagtaactgtcaaccaaaattattacatacaaaaaaagatattcttaaat
gggtgggtatataaagactttgttagatcagcacagatgaaagcaattca
tggctacgagcattacagaaggttcttgaaacaattcaatgccccacaaa
agacagacattaaacaagaacatgggatagaataaacctcatgagagaag
agtgtaacagatgagaactagaaaatgatctgcatgtccaccgcagtgaa
acacgttagtaaaggacaaagaaaaaggacaaatactgtgtgaaccaacc
aggagaagaacctagaaaaattacagaactcaccaaatggttcccaacaa
cccctctaaatagcgattatttccattgtctaactaacaggtgtagactc
gttcactggatcaaaacttaggtccaaccatttacagctcacaaaagaaa
cacccccagtgacaaaggattcacactcatgacacactaatggattggaa
agatgtacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_25805718_25806316
seq2: B6Ng01-237C09.b_48_646

seq1  GAATTCTTAATTCAGTTTACACTTCTGGGCCCAAGTTTCTCATCAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTCAGTTTACACTTCTGGGCCCAAGTTTCTCATCAAACAA  50

seq1  GGAAATTAGACTAGATAATTTTCTTTCCAGTGTTAACAGGGCAAAACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTAGACTAGATAATTTTCTTTCCAGTGTTAACAGGGCAAAACAAC  100

seq1  ACAAAATCAACAAGCAAAAGTGAAAATCATGAACTCTTCAATAATAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCAACAAGCAAAAGTGAAAATCATGAACTCTTCAATAATAAGCA  150

seq1  TTTTTATTAAGACATTGGATGTGTGTGTGTGTGTGTGTGTCTGTGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAAGACATTGGATGTGTGTGTGTGTGTGTGTGTCTGTGTGTCT  200

seq1  GTGTGTCTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTAGATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGTGTGTGTGTGTCTGTGTGTGTGTGTCTGTGTGTAGATGTGT  250

seq1  GCATGCATACTTGGCTTGTTCTAGAGACATAATTTATGAAAGGTGGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCATACTTGGCTTGTTCTAGAGACATAATTTATGAAAGGTGGTTTT  300

seq1  ATAGTTTAGAAAATCAAATGCATATGGTCTCAATGACTGCTCAATTGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTAGAAAATCAAATGCATATGGTCTCAATGACTGCTCAATTGTAA  350

seq1  ATGGACTCACTATTTCCTCTTTGGTCTACTGGACAACAGTAACAATAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTCACTATTTCCTCTTTGGTCTACTGGACAACAGTAACAATAACC  400

seq1  ACTATAAAATCAGAAGCTTTTTAGTGGTTTATAGAGGAAAAAAAAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAAATCAGAAGCTTTTTAGTGGTTTATAGAGGAAAAAAAAAGAAC  450

seq1  CCTAAAATTTATTCTCAGTTAAATTAAAATGAAACCTGAGGAAAGCATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAATTTATTCTCAGTTAAATTAAAATGAAACCTGAGGAAAGCATTT  500

seq1  GTTTAATTTGAAAAGTATATTGCAGCACATATTTGGAAACCATACAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTGAAAAGTATATTGCAGCACATATTTGGAAACCATACAATTC  550

seq1  ATTTCTCGGACTGTGATAAAACACTATGCCCTGACACAGGATACCACAG  599
      ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTTCTCGGACTGTGATAATACACTATGCCCTGACACAGGATACCACAG  599

seq1: chr19_26014790_26015661
seq2: B6Ng01-237C09.g_257_1130 (reverse)

seq1  TGGTACATCTTTCCAATCC-TTTGTGTGTTCATGTGTGTGAAT-CTTTGT  48
      ||||||||||||||||||| || ||||| ||||| |||||||| ||||||
seq2  TGGTACATCTTTCCAATCCATTAGTGTG-TCATGAGTGTGAATCCTTTGT  49

seq1  CACT-GGGGTGTTTCTTTTGTGAGCTGTAAATGGTTGGACCTTAAGTTTT  97
      |||| |||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACTGGGGGTGTTTCTTTTGTGAGCTGTAAATGGTTGGACC-TAAGTTTT  98

seq1  GATCCAGTGAACGAGTCTACACCTGTTAGTTAGACAATGGAAATAATCGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGTGAACGAGTCTACACCTGTTAGTTAGACAATGGAAATAATCGC  148

seq1  TATTTAGAGGGGTTGTTGGGAACCATTTGGTGAGTTCTGTAATTTTTCTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGAGGGGTTGTTGGGAACCATTTGGTGAGTTCTGTAATTTTTCTA  198

seq1  GGTTCTTCTCCTGGTTGGTTCACACAGTATTTGTCC-TTTTCTTTGTCCT  246
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGTTCTTCTCCTGGTTGGTTCACACAGTATTTGTCCTTTTTCTTTGTCCT  248

seq1  TTACTAACGTGTTTCACTGCGGTGGACATGCAGATCATTTTCTAGTTCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAACGTGTTTCACTGCGGTGGACATGCAGATCATTTTCTAGTTCTC  298

seq1  ATCTGTTACACTCTTCTCTCATGAGGTTTATTCTATCCCATGTTCTTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTACACTCTTCTCTCATGAGGTTTATTCTATCCCATGTTCTTGTT  348

seq1  TAATGTCTGTCTTTTGTGGGGCATTGAATTGTTTCAAGAACCTTCTGTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCTGTCTTTTGTGGGGCATTGAATTGTTTCAAGAACCTTCTGTAA  398

seq1  TGCTCGTAGCCATGAATTGCTTTCATCTGTGCTGATCTAACAAAGTCTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCGTAGCCATGAATTGCTTTCATCTGTGCTGATCTAACAAAGTCTTT  448

seq1  ATATACCCACCCATTTAAGAATATCTTTTTTTGTATGTAATAATTTTGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACCCACCCATTTAAGAATATCTTTTTTTGTATGTAATAATTTTGGT  498

seq1  TGACAGTTACTTATTTCCAAGGCCTGAAATACTTCCTTCTATGCTGCTGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTTACTTATTTCCAAGGCCTGAAATACTTCCTTCTATGCTGCTGT  548

seq1  TCTGGGTGGTAAGAATTCTTCTTAGAAGTCTGATGATATTTTAATGAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGGTAAGAATTCTTCTTAGAAGTCTGATGATATTTTAATGAGTT  598

seq1  TGCATCTGTGATTTGGCTTTTTACAAAAATTGCTGCTTTTACTGCTTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTGTGATTTGGCTTTTTACAAAAATTGCTGCTTTTACTGCTTTCT  648

seq1  TCTGCAGCTTTAACACACACACATACACACACACACATATGAGTTTTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCTTTAACACACACACATACACACACACACATATGAGTTTTTTT  698

seq1  CTTTTTGCAATATGTCTGTGTACCACACCCATGTCTGGTGTCTATGGATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGCAATATGTCTGTGTACCACACCCATGTCTGGTGTCTATGGATG  748

seq1  CCATAAAGGATTTGGGTCCCTGGAATTTGAGTTGCAGATGGTTGTGAGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGGATTTGGGTCCCTGGAATTTGAGTTGCAGATGGTTGTGAGCT  798

seq1  GCTATGTGAGTGGTGGGAATCAAATCTCGGTCCTATGGAAGACCAGCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTGAGTGGTGGGAATCAAATCTCGGTCCTATGGAAGACCAGCCAG  848

seq1  TGCTGTTCACCACTGAGACACCTTTA  872
      ||||||||||||||||||||||||||
seq2  TGCTGTTCACCACTGAGACACCTTTA  874