BAC Information

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BAC

Clone NameB6Ng01-239B23
Chromosome19 (Build37)13 (Build37)
Map Location 38,916,865 - 38,917,03887,058,952 - 87,060,234
singlet/doubletsingletsinglet
Overlap geneTbc1d12
Upstream geneLOC209281, Fer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l
Downstream geneHells, LOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239B23.bB6Ng01-239B23.g
ACCGA049636GA049637
length9981,134
definitionB6Ng01-239B23.b B6Ng01-239B23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(38,916,865 - 38,917,038)(87,058,952 - 87,060,234)
sequence
gaattcaagtaccatacataaacataataaaagcatttttcagcaaacca
acagccaatatcaaattaaaaggagagataattgaagcaattccactaaa
attagggacaaggatacccactctccccatatatattcaatatagtactt
gaaatgctagatagaacaataaaactaaaatagttcaaggagatataaat
tggcaaagaaaaataatgatatcattatttgcagaagatatgatagtaaa
cataagcgaccccaaagaattctaccagaaaacatctccagctgataatc
aacttcagtaaagtggccagatagaaaattaactcaaagtgtggtggcat
atgcctttaatctcagcacttgggagacagaggcaggcagatttcagagt
tcgaagccagcctggccttcaaagtgagttccaggatagccagggttata
cagagaaaccctgtctagaaaaacaaacaaacaaaaaaacaaaattaaaa
aaaaaacccacctcaaacaaattagggaaactattcctttcacaatagcc
acaaataatataaaatatcttgggggtaactctaaacaaataggtgaaag
atctgcataacaataacttcaagtctctcaaggaagaaagggaagaagat
ctcagaaaatggagagatctcccatgctcaaggattggcagaattaacat
agtaaaagtgaccatcctaccaaaggcaatctacagatgcaatgcaatcg
tcatcaatatactaaaacaattattcaaagacacgaaaagagcaattctc
aaattcaactggaaagaaaataactcagaatagcaaaaataattcttaac
aataaaagaagagctgggggaaatcacaatccctaacttcaagctctact
acagactagtagtaataaaaactgcctgatattggtacacagagaggcag
gttgatcaatgcaataaaattgaagacccagtaataaaaccatgcact
gaattcactcagtagcattcataccaggagacaaataatgcacataatac
ctctctctccctctctctctctctctctctctctctctctctctcacaca
cacacacacacacacacacacacacacacacaagttactatgctaaatga
cagactgatcagatataattctaaccaatttagacctacttacttttgac
gaatgttgtaaatggcaaatatatatgtacatgtcaacatgaaggttctt
atatttaaaactaaatacaaagggagtgattggtatatcgaattaaacta
atgtggtcttttagagttactgcaaatgaagtgtgaaacatccagaatgg
aacacacttgatccaaactagccaaaccaagaatagtacaattaagcctc
tgctaaggattcagttacacagaacaaaacagtatatcctctaaagtaat
ctcatgatgcccaaagttagtgacattgacaatggacaggtttttcagaa
agagaaaatgcaaataatatgattatttttctccttctgcctgttgtggt
ttactcatcacttattgaagagtatagtttagaggctaaaagccttgcta
atattcatgagtattgttagcatcagtttgcaataagtcacattagatca
acataatacttgtcatcactgacagagtgcttattggtcattcaaagtgt
aagtagaatccattaagaaaattgactctgttatcatctctgcattgctg
acttcaaggataaagacaggtgaggaaattcttgtgctttctgaactatt
aaagaattaattgatgatggatttttttttctgttgcaaaagcaagaagt
ttcttttccttcacgttttggttgacctttaatttgtccctcaaggtgag
ttactaagaagtcaaacccaaatgcctattacaagtaggtttatactttt
taggtgccacaggttacatcagcaaggttacagttcaaacttttttgggt
cagcatattgacctttagtcttattggccagcaacatgaacacacatttg
aagcttcttacctggaactttccagagtattcatgttaacctgctccggt
tctgaaaagttttttactccagaatggtcctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_38916865_38917038
seq2: B6Ng01-239B23.b_382_545

seq1  GTGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGC  50
      ||||||||||  |||||||||||| ||||||||||||| |||||||||||
seq2  GTGTGGTGGCATATGCCTTTAATCTCAGCACTTGGGAGACAGAGGCAGGC  50

seq1  GGATTTCTGAGTTCGAAGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACA  100
       |||||| ||||||||||||||||||| || ||||||||||||||||| |
seq2  AGATTTCAGAGTTCGAAGCCAGCCTGGCCTTCAAAGTGAGTTCCAGGATA  100

seq1  GCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAAACAAACAAA  150
      ||||||| |||||||||||||||||||| |||||||   |||||||||||
seq2  GCCAGGGTTATACAGAGAAACCCTGTCTAGAAAAAC---AAACAAACAAA  147

seq1  CAAACAAAAAAAACAAAAAAAAAA  174
       ||||||||  || |||       
seq2  AAAACAAAATTAAAAAA-------  164

seq1: chr13_87058952_87060234
seq2: B6Ng01-239B23.g_66_1199

seq1  GAATTCACTCAGTAGCATTCATACCAGGAGACAAATAATGCACATAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGTAGCATTCATACCAGGAGACAAATAATGCACATAATAC  50

seq1  CTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACA  100

seq1  CACACACACACACACACACACACACACACACAAGTTACTATGCTAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAAGTTACTATGCTAAATGA  150

seq1  CAGACTGATCAGATATAATTCTAACCAATTTAGACCTACTTACTTTTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGATCAGATATAATTCTAACCAATTTAGACCTACTTACTTTTGAC  200

seq1  GAATGTTGTAAATGGCAAATATATATGTACATGTCAACATGAAGGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTGTAAATGGCAAATATATATGTACATGTCAACATGAAGGTTCTT  250

seq1  ATATTTAAAACTAAATACAAAGGGAGTGATTGGTATATCGAATTAAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAACTAAATACAAAGGGAGTGATTGGTATATCGAATTAAACTA  300

seq1  ATGTGGTCTTTTAGAGTTACTGCAAATGAAGTGTGAAACATCCAGAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTCTTTTAGAGTTACTGCAAATGAAGTGTGAAACATCCAGAATGG  350

seq1  AACACACTTGATCCAAACTAGCCAAACCAAGAATAGTACAATTAAGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTTGATCCAAACTAGCCAAACCAAGAATAGTACAATTAAGCCTC  400

seq1  TGCTAAGGATTCAGTTACACAGAACAAAACAGTATATCCTCTAAAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGGATTCAGTTACACAGAACAAAACAGTATATCCTCTAAAGTAAT  450

seq1  CTCATGATGCCCAAAGTTAGTGACATTGACAATGGACAGGTTTTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGATGCCCAAAGTTAGTGACATTGACAATGGACAGGTTTTTCAGAA  500

seq1  AGAGAAAATGCAAATAATATGATTATTTTTCTCCTTCTGCCTGTTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATGCAAATAATATGATTATTTTTCTCCTTCTGCCTGTTGTGGT  550

seq1  TTACTCATCACTTATTGAAGAGTATAGTTTAGAGGCTAAAAGCCTTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATCACTTATTGAAGAGTATAGTTTAGAGGCTAAAAGCCTTGCTA  600

seq1  ATATTCATGAGTATTGTTAGCATCAGTTTGCAATAAGTCACATTAGATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATGAGTATTGTTAGCATCAGTTTGCAATAAGTCACATTAGATCA  650

seq1  ACATAATACTTGTCATCACTGACAGAGTGCTTATTGGTCATTCAAAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATACTTGTCATCACTGACAGAGTGCTTATTGGTCATTCAAAGTGT  700

seq1  AAGTAGAATCCATTAAGAAAATTGACTCTGTTATCATCTCTGCATTGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAATCCATTAAGAAAATTGACTCTGTTATCATCTCTGCATTGCTG  750

seq1  ACTTCAAGGATAAAGACAGGTGAGGAAATTCTTGTGCTTTCTGAACTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAGGATAAAGACAGGTGAGGAAATTCTTGTGCTTTCTGAACTATT  800

seq1  AAAGAATTAATTGATGATGGA-TTTTTTTTCTGTTGCAAAAGCAAGAAGT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAGAATTAATTGATGATGGATTTTTTTTTCTGTTGCAAAAGCAAGAAGT  850

seq1  TTCTTTTCCTTCACGTTTTGGTTGACCTTAAATTTGTCCCTCAAGGTGAG  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCTTTTCCTTCACGTTTTGGTTGACCTTTAATTTGTCCCTCAAGGTGAG  900

seq1  TTACTAAGAAGTCAAACCCAAATGCCTATTACAAGTAGGTTTATACTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAGAAGTCAAACCCAAATGCCTATTACAAGTAGGTTTATACTTTT  950

seq1  TAGGTG-CACAGGTTACATCAGCAAGGTTACAGTTCAAAC-TTTTTGGTT  997
      |||||| ||||||||||||||||||||||||||||||||| ||||||| |
seq2  TAGGTGCCACAGGTTACATCAGCAAGGTTACAGTTCAAACTTTTTTGGGT  1000

seq1  AAGCATATTGACCTTTAAGTC-TATTGGCCAGCAAACATG-ACACACATT  1045
       ||||||||||||||| |||| ||||||||||| |||||| |||||||||
seq2  CAGCATATTGACCTTT-AGTCTTATTGGCCAGC-AACATGAACACACATT  1048

seq1  TG-AGCT--CTACCTGGGACTTTCCAGAGTA-TCATGT--AACTG--TCG  1087
      || ||||   ||||||| ||||||||||||| ||||||  | |||   ||
seq2  TGAAGCTTCTTACCTGGAACTTTCCAGAGTATTCATGTTAACCTGCTCCG  1098

seq1  GTTCTGAAAA-TTTTTTACTCAAGAATGTTCCTGTGGATAGCCTTGACCC  1136
      |||||||||| |||||||||| |||||| ||||||               
seq2  GTTCTGAAAAGTTTTTTACTCCAGAATGGTCCTGTC--------------  1134

seq1  CAGAAAGGAGGGGGAAGCTGGAAGGAGGGTGTGAGACTGGAAAACCCCTC  1186
                                                        
seq2  --------------------------------------------------  1134

seq1  AGGATGCCTCATTTTCTGCTTTTTCTTGAACAAGTTTCAATTCTGGAGCT  1236
                                                        
seq2  --------------------------------------------------  1134

seq1  ACACTCAGCCGTCTTGGGTAACTAACTCATATCCTTCAGGTCCTGTC  1283
                                                     
seq2  -----------------------------------------------  1134