BAC Information

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BAC

Clone NameB6Ng01-239L14
Chromosome19 (Build37)
Map Location 31,117,855 - 31,273,411
singlet/doubletdoublet
Overlap genePrkg1, Cstf2t
Upstream geneUhrf2, Gldc, EG625917, Mbl2, LOC100042088, LOC668020, EG546723, Dkk1, LOC625995
Downstream gene8430431K14Rik, 1810073H04Rik, Asah2, EG668042, Sgms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-239L14.bB6Ng01-239L14.g
ACCGA050075GA050076
length1,1941,113
definitionB6Ng01-239L14.b B6Ng01-239L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,117,855 - 31,119,045)(31,272,331 - 31,273,411)
sequence
gaattctttcactctgtctaatcatctctctccctctaagaacagcccaa
actccaccacacatgagaatgtgtgcctggtaatgttcaaggcctagagc
agagattgactacatcactacttttggtgcctacttgtgggatctaccga
aggttttgatctttaattgaggtcccttgaaagggctatggcttacatgt
gcatttgtcacattagccttattttaaatacactacactgaaacactgaa
actatacatttaactatacatttttgtctgtctcaaaagcatgaaagtga
atattttctttttttgaggtttacttattcatatatttaaatatatgagt
gttctatttgcacgtgtgcctgcatgacattgagggcatcagatcccatt
acagatgattgtgagccacagtgtggttgctaggaattgaactcaggacc
tgtggaagagcagccagttctcttaaccactgagccatctccccagcccc
atttccatatttccatctctctagcttcataaaaatgtataacccgggtg
gtggtggtgcacacctttaatcccagcacttgggaggcagaggcaggagg
atttctgagttcgaggccagcctggtctacagagtgagttccagaccagc
caggactacacagaggaaccctgtcttggaaaaacaaacaaacaaacaaa
caaacaaacaaacaaaatgtataacccagactggcctccatctttgtgat
cctctccacctccttcagcaaatctcaccaccacatccggctaacgtttt
cttaaaagaatctattttcaattagaaaggaaaacaataaaaattattca
attggtttataaaaaagcattcatggatatcatttagccttttgggtcat
tattttaaaaacagttaagatttatatgcccaagcaccatctgttttaag
aattcagccccacaccacacacaaatttcatgcaactaagacttcaggct
ccatcagtctgtaaaagaatttatcattcaggctaaatcacatcataata
aggatatttaatttaaaagttcattagtccattttaactcaaacatccaa
gtacattgaacaaaactcgctttaacttcgttcttgtttgttttgatttg
aaggcagattcatgatttccccttgcctctgcttccaacatgct
gaattcctttctgaaaggaaaagtattggctccagaacaccaagacccag
tgagttttcagcatgaaggagattcccctgcccctgagggacagagtgca
gggaatgagagacaaagacaggcagcagaggatgaaggagaaggggaagg
gaacaagggagaggggaaagacatggacaaagcacttcctctgcttagag
aggagacagatgtgacatataggaaaatggtggtttataaagctaaaggg
gaaaccccgtgtcaggatgaggtgtttaattttaattgggcgtattaatt
aggtgagccaaatggggggaggggtgtgccgggcttcaacactttgataa
ctgaaccttgatagtcagcctcaggaggaggaagtggccaagtgagggaa
tagacttgagtggctagctttaggaatgtaatctagtggtctttagcaag
gcagagggcatcagggagaagggcaagacctggcagcgccatacttgctt
acctcactggacctggtgcgaggcctgtcaccttccacagtagacctact
tttaaccatctgtgcttgacttttttcttagttgctatcttctactgcat
ccaggctaacagtaaacactctcttaattcagcctttatttgtcaggtgg
agaaataagaaagaaaaatcaatcaaataggaccaaaccttagtggccac
ataaaactctctcagagtttcactctgtttagactccatccataggagga
tctgtgaatcagctgtctgtctaccccaccccaccccacccccatacaca
cacctaaacactctcttagctaagttttgctccccataataaaactcttc
ctttatgttccatacctcggggcattaagaaatattttctattactggaa
attattggggattatctcagcactattatcccactgttaattttggtttt
aactctcttggtttctaagatcttccttaactgtcattggtagaatattc
tctacctcaaatacaggttacctctaatatgtaatctcatttgatagcct
ttattggataaaattgggtcttttctactctaacttagtgggttttatta
gtacatgtccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_31117855_31119045
seq2: B6Ng01-239L14.b_43_1236

seq1  GAATTCTTTCACTCTGTCTAATCATCTCTCTCCCTCTAAGAACAGCCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACTCTGTCTAATCATCTCTCTCCCTCTAAGAACAGCCCAA  50

seq1  ACTCCACCACACATGAGAATGTGTGCCTGGTAATGTTCAAGGCCTAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACCACACATGAGAATGTGTGCCTGGTAATGTTCAAGGCCTAGAGC  100

seq1  AGAGATTGACTACATCACTACTTTTGGTGCCTACTTGTGGGATCTACCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTGACTACATCACTACTTTTGGTGCCTACTTGTGGGATCTACCGA  150

seq1  AGGTTTTGATCTTTAATTGAGGTCCCTTGAAAGGGCTATGGCTTACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGATCTTTAATTGAGGTCCCTTGAAAGGGCTATGGCTTACATGT  200

seq1  GCATTTGTCACATTAGCCTTATTTTAAATACACTACACTGAAACACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGTCACATTAGCCTTATTTTAAATACACTACACTGAAACACTGAA  250

seq1  ACTATACATTTAACTATACATTTTTGTCTGTCTCAAAAGCATGAAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATACATTTAACTATACATTTTTGTCTGTCTCAAAAGCATGAAAGTGA  300

seq1  ATATTTTCTTTTTTTGAGGTTTACTTATTCATATATTTAAATATATGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTTTTTTGAGGTTTACTTATTCATATATTTAAATATATGAGT  350

seq1  GTTCTATTTGCACGTGTGCCTGCATGACATTGAGGGCATCAGATCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTTGCACGTGTGCCTGCATGACATTGAGGGCATCAGATCCCATT  400

seq1  ACAGATGATTGTGAGCCACAGTGTGGTTGCTAGGAATTGAACTCAGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGATTGTGAGCCACAGTGTGGTTGCTAGGAATTGAACTCAGGACC  450

seq1  TGTGGAAGAGCAGCCAGTTCTCTTAACCACTGAGCCATCTCCCCAGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAAGAGCAGCCAGTTCTCTTAACCACTGAGCCATCTCCCCAGCCCC  500

seq1  ATTTCCATATTTCCATCTCTCTAGCTTCATAAAAATGTATAACCCGGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATATTTCCATCTCTCTAGCTTCATAAAAATGTATAACCCGGGTG  550

seq1  GTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGTGCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGAGG  600

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGACCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGACCAGC  650

seq1  CAGGACTACACAGAGGAACCCTGTCTTGGAAAAACAAACAAACAAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTACACAGAGGAACCCTGTCTTGGAAAAACAAACAAACAAACAAA  700

seq1  CAAACAAACAAACAAAATGTATAACCCAGACTGGCCTCCATC-TTGTGAT  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAAACAAACAAACAAAATGTATAACCCAGACTGGCCTCCATCTTTGTGAT  750

seq1  CCTCTCCACCTCCTTCAGCAAATCTCACCACCACATCCGGCTAACGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCACCTCCTTCAGCAAATCTCACCACCACATCCGGCTAACGTTTT  800

seq1  CTTAAAAGAATCTATTTTCAATTAGAAAGGAAAACAATAAAAATTATTCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGAATCTATTTTCAATTAGAAAGGAAAACAATAAAAATTATTCA  850

seq1  ATTGGTTTATAAAAAAGCATTCATGGATATCA-TTAGCCTTTTGGGTCAT  898
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTGGTTTATAAAAAAGCATTCATGGATATCATTTAGCCTTTTGGGTCAT  900

seq1  TATTTTAAAAACAGTT-AGATTTATATGCCCAAGCACCATTCTGTTTTAA  947
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  TATTTTAAAAACAGTTAAGATTTATATGCCCAAGCACCA-TCTGTTTTAA  949

seq1  G-ATTCAG-CCCACA-CACACACAAATTTCATGCAACTAAGACTTCAGGC  994
      | |||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCCACACCACACACAAATTTCATGCAACTAAGACTTCAGGC  999

seq1  TCCATCAGTCTGTAAAAGAATTTATCAGTCAGGCTAAA-CACATCAATAA  1043
      ||||||||||||||||||||||||||| |||||||||| |||||| ||||
seq2  TCCATCAGTCTGTAAAAGAATTTATCATTCAGGCTAAATCACATC-ATAA  1048

seq1  TAA-GATATTT-ATTTAAAAGTTCATTAGGTTCCATTTT-ACTCAAACAT  1090
      ||| ||||||| |||||||||||||||||  |||||||| ||||||||||
seq2  TAAGGATATTTAATTTAAAAGTTCATTAG--TCCATTTTAACTCAAACAT  1096

seq1  CAAGTTACATTTGAC-AAACTCGCTTT-ACTTCGTTTCTTTGTTTTGTTT  1138
      | |  ||||||  || ||||||||||| |||||| |||||   |||||||
seq2  CCAAGTACATTGAACAAAACTCGCTTTAACTTCG-TTCTT--GTTTGTTT  1143

seq1  TG-TTTGAGGCAAGATTTCATGATTTTTCCCCCTGCCTCTGCTTCCCACA  1187
      || ||||| |  ||| |||||||  ||||||| ||||||||||||| |||
seq2  TGATTTGAAGGCAGA-TTCATGA--TTTCCCCTTGCCTCTGCTTCCAACA  1190

seq1  TGCT  1191
      ||||
seq2  TGCT  1194

seq1: chr19_31272331_31273411
seq2: B6Ng01-239L14.g_103_1181 (reverse)

seq1  TTTGGACAAGTGTTACTAATTAAAACAGATAAGTTAGAAGTAAGAAAGAC  50
      |||||||| |   ||||||| ||| |   |||||||| ||||  ||||||
seq2  TTTGGACATG---TACTAATAAAACCCACTAAGTTAG-AGTAGAAAAGAC  46

seq1  ACAATTTTAT-CAATAAAGCTTATAAAATGAGATTACATATTAAAGAGTA  99
       ||||||||| ||||||||  ||| |||||||||||||||||| || |||
seq2  CCAATTTTATCCAATAAAGGCTATCAAATGAGATTACATATTAGAG-GTA  95

seq1  ACCTGTATTTGA-GTAGAGAATATTCTACAATTGACAGTTAAGGAAGATT  148
      |||||||||||| |||||||||||||||| | |||||||||||||||| |
seq2  ACCTGTATTTGAGGTAGAGAATATTCTACCAATGACAGTTAAGGAAGA-T  144

seq1  CTTAGAAACCAAGAGAGTTAAAAACAAAAATTAACAGTGGGATAATAGTG  198
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CTTAGAAACCAAGAGAGTT-AAAACCAAAATTAACAGTGGGATAATAGTG  193

seq1  CTGAGATAAT-CCCAATAATTT-CAGTAATAG-AAATATTTCTTAAATGC  245
      |||||||||| ||||||||||| ||||||||| |||||||||||||   |
seq2  CTGAGATAATCCCCAATAATTTCCAGTAATAGAAAATATTTCTTAATGCC  243

seq1  CCGAGGTATGGAACATAAAGGAAGAGTTTTATTATGGGGGAGCAAAACTT  295
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCGAGGTATGGAACATAAAGGAAGAGTTTTATTAT-GGGGAGCAAAACTT  292

seq1  AGCTAAGAGAGTG-TTAGGTGTGTGTATGGGGGTGGGGTGGGGTGGGGTA  344
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGAGAGTGTTTAGGTGTGTGTATGGGGGTGGGGTGGGGTGGGGTA  342

seq1  GACAGACAGCTGATTCACAGATCCTCCTATGGATGGAGTCTAAACAGAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACAGCTGATTCACAGATCCTCCTATGGATGGAGTCTAAACAGAGT  392

seq1  GAAACTCTGAGAGAGTTTTATGTGGCCACTAAGGTTTGGTCCTATTTGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTGAGAGAGTTTTATGTGGCCACTAAGGTTTGGTCCTATTTGAT  442

seq1  TGATTTTTCTTTCTTATTTCTCCACCTGACAAATAAAGGCTGAATTAAGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTCTTTCTTATTTCTCCACCTGACAAATAAAGGCTGAATTAAGA  492

seq1  GAGTGTTTACTGTTAGCCTGGATGCAGTAGAAGATAGCAACTAAGAAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTTACTGTTAGCCTGGATGCAGTAGAAGATAGCAACTAAGAAAAA  542

seq1  AGTCAAGCACAGATGGTTAAAAGTAGGTCTACTGTGGAAGGTGACAGGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGCACAGATGGTTAAAAGTAGGTCTACTGTGGAAGGTGACAGGCC  592

seq1  TCGCACCAGGTCCAGTGAGGTAAGCAAGTATGGCGCTGCCAGGTCTTGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCACCAGGTCCAGTGAGGTAAGCAAGTATGGCGCTGCCAGGTCTTGCC  642

seq1  CTTCTCCCTGATGCCCTCTGCCTTGCTAAAGACCACTAGATTACATTCCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTGATGCCCTCTGCCTTGCTAAAGACCACTAGATTACATTCCT  692

seq1  AAAGCTAGCCACTCAAGTCTATTCCCTCACTTGGCCACTTCCTCCTCCTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTAGCCACTCAAGTCTATTCCCTCACTTGGCCACTTCCTCCTCCTG  742

seq1  AGGCTGACTATCAAGGTTCAGTTATCAAAGTGTTGAAGCCCGGCACACCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGACTATCAAGGTTCAGTTATCAAAGTGTTGAAGCCCGGCACACCC  792

seq1  CTCCCCCCATTTGGCTCACCTAATTAATACGCCCAATTAAAATTAAACAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCATTTGGCTCACCTAATTAATACGCCCAATTAAAATTAAACAC  842

seq1  CTCATCCTGACACGGGGTTTCCCCTTTAGCTTTATAAACCACCATTTTCC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTGACACGGGGTTTCCCCTTTAGCTTTATAAACCACCATTTTCC  892

seq1  TATATGTCACATCTGTCTCCTCTCTAAGCAGAGGAAGTGCTTTGTCCATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTCACATCTGTCTCCTCTCTAAGCAGAGGAAGTGCTTTGTCCATG  942

seq1  TCTTTCCCCTCTCCCTTGTTCCCTTCCCCTTCTCCTTCATCCTCTGCTGC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCCTCTCCCTTGTTCCCTTCCCCTTCTCCTTCATCCTCTGCTGC  992

seq1  CTGTCTTTGTCTCTCATTCCCTGCACTCTGTCCCTCAGGGGCAGGGGAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTTGTCTCTCATTCCCTGCACTCTGTCCCTCAGGGGCAGGGGAAT  1042

seq1  CTCCTTCATGCTGAAAACTCACTGGGTCTTGGTGTTC  1081
      |||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATGCTGAAAACTCACTGGGTCTTGGTGTTC  1079