BAC Information

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BAC

Clone NameB6Ng01-240D11
Chromosome19 (Build37)
Map Location 21,035,255 - 21,184,666
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042218, LOC100041541, Anxa1, LOC100041560, 1500015L24Rik, E030003E18Rik, EG626549, Aldh1a1, Aldh1a7, Tmc1, LOC100042287
Downstream geneLOC100042294, LOC100041602, LOC100041613, Zfand5, Gda, LOC100041633, 1110059E24Rik, 5730446C15Rik, Tmem2, EG433229
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240D11.bB6Ng01-240D11.g
ACCGA050442GA050443
length1,1841,138
definitionB6Ng01-240D11.b B6Ng01-240D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,183,474 - 21,184,666)(21,035,255 - 21,036,403)
sequence
gaattcagcacagtgcagatgttaacaggaacctcatatgtttagcattt
gtctccacagattaaaagtttcaagacgcacgtggataacctgttagaac
tgtgggaaatcattgaagatgagagactgaatgagagaaggagattatac
aaggctataacccacggaattcaaaatgataaacaaaacacacacacaca
cacacaaacacatacacacaaacacatacacacatacacacacacacata
cacacacatatggggggcgggaggaaggaatggaaagaaacatatttaga
agtgctacattcatgtagccaaacactatcattaaaataaaagcatttaa
tacatatcaccaaaaaaaaaagggaagcctggataataaggttgtacatt
taatgcatcagtaaataaaacattttatttccagttataaaggtcttcaa
gaatgttattggtcattatttccaatgagcaactatgttcccaagggcac
tgagtataataaagtgaatctgacaatatgcttacttttaaaagctgatg
cgctttggttataagaatacattggaaagggttctcctctcctgttggca
gaaattcaagcactcaaacattttgtttaggaagaactgggaaggtgtat
gttggtcaggcaaggagttagctgactgtgtatagtggaatatggtccta
gataccatgaaaagatgcatcatcaccaccaccatcatcaccatcactac
catcaccatcattatcattgtttaccatcatcatcactgttagcagcatc
agcagtcagaaatgtgaattttctggtttcatgcgggacctatggggaat
cacaacctgaggatggacccccacagcctggattctcataagcccctgag
aggttgttggaacttaagctaaagctttgatcctaatggatatagcagtt
ataaacaactctggtcctgatcctccagtcagtgaaaggaacatgtacag
atacgtgctttttttcaaatcagtaatgattgtgcttgaagaccagcaaa
ggccttatctctgaatcttgctaaagaagagagaccggacttccttccaa
tcttctgcctgctgctcaggatccccagcaggacaggccttctactcatg
attttgtcctgtgtaactggcacgaactagtaat
gaattccacagtcaaaacatcctttctctgcagcactgacagccagtctt
tgccccaagcacttgtttatcaccacttcttttgccgaggtagtaccctc
aataatttttcaagtttctgttctcctagacatgtaaccttgtgttcacc
agaggctcacaagcatcctcttccctcctagagaaatgctgcgatttggg
aatgcaccatgcatccttccagaagacaagtgtgtcagcatcccatcatc
acacagttccgattggaagcagggaaagttaactttggctcacagttttt
gagattttgtttcagatccatcatctagcctgtctaggaccccccacagt
tgtcccattcatgccctatccacatagttgagttgaattggcagccattt
gtatgacttcacatgtaaaaattactggtgatacatgtccacatcattca
cggaagctagaagcaaaatgtggtgaaggagtaatcagaaaccattcaac
gcaaaagaatgcagaacttcagatggtgtcccttttacaaaagcaacagg
cagctatttctactaaaattcacattcttggaagccattcgttatgagaa
tgtgaagcaaacacaacacagcagaggacactgtgagatgagtagctgag
aacaagatcaactggatatgaaggtctcaatggtgtagagggaacgctgg
gcctcccacaaaggctataagagactcagagaagacctgaacactgcatt
tcatctcactgttttatttttgaaaacaagagacttcttttccctaagtc
cccttcacttgtggagaatgcaccactatcatcacacaatgctagaaaaa
taaaggcagctctaggaaggaagttttttgtaatttcctagggaaggaat
tttaatctaaaaacatgggttgctctggcaagggatcacatccaaaaact
tctaagtccaaatgatctggctggaatgacatacctctaatctctcttga
tggaatatatacccttatacacacctttaatcctacaatgacgtaaatag
ttgtagaagaaattcagcaatgttgaaagagaatcctactgaaggtagat
aaatgatccacagaataaagctgacgaatacctattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_21183474_21184666
seq2: B6Ng01-240D11.b_48_1231 (reverse)

seq1  ATTACTAGGTACTGTGCAGTTACCACAAGGACAAAATCATGAGTAAGAAG  50
      |||||||| |  ||  |||||| ||| ||||||||||||||||| |||  
seq2  ATTACTAGTTCGTG-CCAGTTA-CAC-AGGACAAAATCATGAGT-AGA--  44

seq1  AGGCCTGTCCTGCCTGGGGGATCTTGAGCAGCA-GCAGAAGAGTGGGGGA  99
      |||||||||||||   ||||||| ||||||||| |||||||| |||    
seq2  AGGCCTGTCCTGC--TGGGGATCCTGAGCAGCAGGCAGAAGATTGG----  88

seq1  GGGGGAGTCCGGTTCTCTCTTCTTTAGCAGGTTTCAGAGGATAAGGCCTT  149
        || ||||||| |||||||||||||||| | |||||| |||||||||||
seq2  AAGGAAGTCCGG-TCTCTCTTCTTTAGCAAGATTCAGA-GATAAGGCCTT  136

seq1  TGCTGGGTCTTCAAGCACATTCATTACTGATTTTGAAAAAAAGCACGTAT  199
      |||| |||||||||||||| |||||||||| |||||||||||||||||||
seq2  TGCT-GGTCTTCAAGCACAATCATTACTGA-TTTGAAAAAAAGCACGTAT  184

seq1  CTGTACATGTT-CTTTCACTG-CTGGAGG-TCAGG-CCAG-GTTGTTTAT  244
      ||||||||||| ||||||||| ||||||| ||||| |||| |||||||||
seq2  CTGTACATGTTCCTTTCACTGACTGGAGGATCAGGACCAGAGTTGTTTAT  234

seq1  AACTGCTATATCCATTAGGATCAAAGCTTTAGCTTAAGTTCCAACAACCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCTATATCCATTAGGATCAAAGCTTTAGCTTAAGTTCCAACAACCT  284

seq1  CTCAGGGGCTTATGAGAATCCAGGCTGTGGGGGTCCATCCTCAGGTTGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGGCTTATGAGAATCCAGGCTGTGGGGGTCCATCCTCAGGTTGTG  334

seq1  ATTCCCCATAGGTCCCGCATGAAACCAGAAAATTCACATTTCTGACTGCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCATAGGTCCCGCATGAAACCAGAAAATTCACATTTCTGACTGCT  384

seq1  GATGCTGCTAACAGTGATGATGATGGT-AACAATGATAATGATGGTGATG  443
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GATGCTGCTAACAGTGATGATGATGGTAAACAATGATAATGATGGTGATG  434

seq1  GTAGTGATGGTGATGATGGTGGTGGTGATGATGCATCTTTTCATGGTATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATGGTGATGATGGTGGTGGTGATGATGCATCTTTTCATGGTATC  484

seq1  TAGGACCATATTCCACTATACACAGTCAGCTAACTCCTTGCCTGACCAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCATATTCCACTATACACAGTCAGCTAACTCCTTGCCTGACCAAC  534

seq1  ATACACCTTCCCAGTTCTTCCTAAACAAAATGTTTGAGTGCTTGAATTTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCTTCCCAGTTCTTCCTAAACAAAATGTTTGAGTGCTTGAATTTC  584

seq1  TGCCAACAGGAGAGGAGAACCCTTTCCAATGTATTCTTATAACCAAAGCG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAGGAGAGGAGAACCCTTTCCAATGTATTCTTATAACCAAAGCG  634

seq1  CATCAGCTTTTAAAAGTAAGCATATTGTCAGATTCACTTTATTATACTCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCTTTTAAAAGTAAGCATATTGTCAGATTCACTTTATTATACTCA  684

seq1  GTGCCCTTGGGAACATAGTTGCTCATTGGAAATAATGACCAATAACATTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCTTGGGAACATAGTTGCTCATTGGAAATAATGACCAATAACATTC  734

seq1  TTGAAGACCTTTATAACTGGAAATAAAATGTTTTATTTACTGATGCATTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACCTTTATAACTGGAAATAAAATGTTTTATTTACTGATGCATTA  784

seq1  AATGTACAACCTTATTATCCAGGCTTCCCTTTTTTTTTTGGTGATATGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACAACCTTATTATCCAGGCTTCCCTTTTTTTTTTGGTGATATGTA  834

seq1  TTAAATGCTTTTATTTTAATGATAGTGTTTGGCTACATGAATGTAGCACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGCTTTTATTTTAATGATAGTGTTTGGCTACATGAATGTAGCACT  884

seq1  TCTAAATATGTTTCTTTCCATTCCTTCCTCCCGCCCCCCATATGTGTGTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATGTTTCTTTCCATTCCTTCCTCCCGCCCCCCATATGTGTGTG  934

seq1  TATGTGTGTGTGTGTATGTGTGTATGTGTTTGTGTGTATGTGTTTGTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTGTGTGTGTATGTGTGTATGTGTTTGTGTGTATGTGTTTGTGTG  984

seq1  TGTGTGTGTGTGTTTTGTTTATCATTTTGAATTCCGTGGGTTATAGCCTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTTTTGTTTATCATTTTGAATTCCGTGGGTTATAGCCTT  1034

seq1  GTATAATCTCCTTCTCTCATTCAGTCTCTCATCTTCAATGATTTCCCACA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATCTCCTTCTCTCATTCAGTCTCTCATCTTCAATGATTTCCCACA  1084

seq1  GTTCTAACAGGTTATCCACGTGCGTCTTGAAACTTTTAATCTGTGGAGAC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAACAGGTTATCCACGTGCGTCTTGAAACTTTTAATCTGTGGAGAC  1134

seq1  AAATGCTAAACATATGAGGTTCCTGTTAACATCTGCACTGTGCTGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTAAACATATGAGGTTCCTGTTAACATCTGCACTGTGCTGAATTC  1184

seq1: chr19_21035255_21036403
seq2: B6Ng01-240D11.g_66_1203

seq1  GAATTCCACAGTCAAAACATCCTTTCTCTGCAGCACTGACAGCCAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTCAAAACATCCTTTCTCTGCAGCACTGACAGCCAGTCTT  50

seq1  TGCCCCAAGCACTTGTTTATCACCACTTCTTTTGCCGAGGTAGTACCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAAGCACTTGTTTATCACCACTTCTTTTGCCGAGGTAGTACCCTC  100

seq1  AATAATTTTTCAAGTTTCTGTTCTCCTAGACATGTAACCTTGTGTTCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTTCAAGTTTCTGTTCTCCTAGACATGTAACCTTGTGTTCACC  150

seq1  AGAGGCTCACAAGCATCCTCTTCCCTCCTAGAGAAATGCTGCGATTTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCACAAGCATCCTCTTCCCTCCTAGAGAAATGCTGCGATTTGGG  200

seq1  AATGCACCATGCATCCTTCCAGAAGACAAGTGTGTCAGCATCCCATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACCATGCATCCTTCCAGAAGACAAGTGTGTCAGCATCCCATCATC  250

seq1  ACACAGTTCCGATTGGAAGCAGGGAAAGTTAACTTTGGCTCACAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTCCGATTGGAAGCAGGGAAAGTTAACTTTGGCTCACAGTTTTT  300

seq1  GAGATTTTGTTTCAGATCCATCATCTAGCCTGTCTAGGACCCCCCACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTGTTTCAGATCCATCATCTAGCCTGTCTAGGACCCCCCACAGT  350

seq1  TGTCCCATTCATGCCCTATCCACATAGTTGAGTTGAATTGGCAGCCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCATTCATGCCCTATCCACATAGTTGAGTTGAATTGGCAGCCATTT  400

seq1  GTATGACTTCACATGTAAAAATTACTGGTGATACATGTCCACATCATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTTCACATGTAAAAATTACTGGTGATACATGTCCACATCATTCA  450

seq1  CGGAAGCTAGAAGCAAAATGTGGTGAAGGAGTAATCAGAAACCATTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCTAGAAGCAAAATGTGGTGAAGGAGTAATCAGAAACCATTCAAC  500

seq1  GCAAAAGAATGCAGAACTTCAGATGGTGTCCCTTTTACAAAAGCAACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAATGCAGAACTTCAGATGGTGTCCCTTTTACAAAAGCAACAGG  550

seq1  CAGCTATTTCTACTAAAATTCACATTCTTGGAAGCCATTCGTTATGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATTTCTACTAAAATTCACATTCTTGGAAGCCATTCGTTATGAGAA  600

seq1  TGTGAAGCAAACACAACACAGCAGAGGACACTGTGAGATGAGTAGCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGCAAACACAACACAGCAGAGGACACTGTGAGATGAGTAGCTGAG  650

seq1  AACAAGATCAACTGGATATGAAGGTCTCAATGGTGTAGAGGGAACGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGATCAACTGGATATGAAGGTCTCAATGGTGTAGAGGGAACGCTGG  700

seq1  GCCTCCCACAAAGGCTATAAGAGACTCAGAGAAGACCTGAACACTGCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCACAAAGGCTATAAGAGACTCAGAGAAGACCTGAACACTGCATT  750

seq1  TCATCTCACTGTTTTATTTTTGAAAACAAGAGACTTCTTTTCCCTAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCACTGTTTTATTTTTGAAAACAAGAGACTTCTTTTCCCTAAGTC  800

seq1  CCCTTCACTTGTGGAGAATGCACCACTATCATCACACAATGCTAGAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACTTGTGGAGAATGCACCACTATCATCACACAATGCTAGAAAAA  850

seq1  T-AAGGCAGCTCTAGGAAGGAAGTTTTTTGTAAATTCCTA-GGAAGGAAT  898
      | ||||||||||||||||||||||||||||||| |||||| |||||||||
seq2  TAAAGGCAGCTCTAGGAAGGAAGTTTTTTGTAATTTCCTAGGGAAGGAAT  900

seq1  TTTAATCTAAAAACAT-GGTTGCTCTGGCAAGGGATCACATCCAAAAAAC  947
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  TTTAATCTAAAAACATGGGTTGCTCTGGCAAGGGATCACATCC-AAAAAC  949

seq1  TTCTAAGTCCAAATGATCTGGCTGGAATGACATACCTCTAATCTCTCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTCCAAATGATCTGGCTGGAATGACATACCTCTAATCTCTCTTG  999

seq1  ATGGAATATATACCCTTAATACACACCTTTAATCCTTAACAATGAAGGTA  1047
      ||||||||||||||||| ||||||||||||||||||  |||||| | |||
seq2  ATGGAATATATACCCTT-ATACACACCTTTAATCCT--ACAATG-ACGTA  1045

seq1  AAATTAGTTTGTAGAAGAAA-TCAGCCATGTTTGAAAGAGAAATCTAATT  1096
      ||  ||| |||||||||||| ||||| ||| |||||||||||  ||| | 
seq2  AA--TAG-TTGTAGAAGAAATTCAGCAATG-TTGAAAGAGAATCCTACTG  1091

seq1  GAGGGGTAGATAAAATGATCAACCAGATAAAAATTTGACAGAATACCTAT  1146
       |  ||||||| |||||||| | |||| | |||  |||| ||||||||||
seq2  AA--GGTAGAT-AAATGATCCA-CAGA-ATAAAGCTGAC-GAATACCTAT  1135

seq1  TCT  1149
      |||
seq2  TCT  1138