BAC Information

Click to search

BAC

Clone NameB6Ng01-240E01
Chromosome19 (Build37)
Map Location 48,757,986 - 48,759,142
singlet/doubletsinglet
Overlap geneSorcs3
Upstream geneCol17a1, 6330577E15Rik, D19Ertd652e, LOC677174, Gsto1, Gsto2, BC063749, Gm969, LOC670576
Downstream geneLOC100042896
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240E01.bB6Ng01-240E01.g
ACCGA050470GA050471
length1,0091,157
definitionB6Ng01-240E01.b B6Ng01-240E01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatttgtttcagaatctggtatatatgtttctctttgttgct
cttggcctgagacttgacctatattggcctgagacttgacctatcaactg
taatctcgtaccaactgggaaataaagcctagttcaggtaatagcttagg
tccaaaccctggttgttatagtcatagagatgtttccagtcctttggtaa
agagaaagatagctttcaaaaagaaaggtcaaaaagatggatgtgtggct
tttgttttcttgaaaagtattccctttgggaatccccttcttcctttgcc
ttaaaaaaaatcccaaagggccaccttgggtttttcccaccccctaattt
aaattccccttggcccccttcaaaagggccaaaacccccccccggccccc
attttaaacattggccaaaatttccccccccctgaagtcaaggggctttt
ttcccaaaaacaaccctttaaacccgccaaaactcccactggatggggct
tggagaccctttagaccaattcaaaaattttttttttttgggctttttag
ggaaaaaaattttggggcgtttttcttatttttggaaaaaaaaaccccta
ttgggcccccttgcccaaaaccccggtttttaaataatttgggaaccaat
ttcacccccctatttccgagatttccccccccgtgtgtgggccctttcca
tatatttctaaagggggaaagagcgggcgcccccccttaagagcacaaat
atatttctctgggaagaaaaacccctctctttagggcgccccaatatatg
tgtcttacacaccgcgcgcctcttaaaaagagcttttggatacaccccgg
ggtaaaaaaaatttttttttttaaaagaaggggtgttttacagaggaaca
catatctttatgagagatgctgtagtataataccatccgcgtagagacga
taagaggaggacgccctcagcttgattggctcttgcggcgttgctagacg
accactcaa
gaattctatttcaattaaaatcgtcaaaaattaattttggcaaagagtaa
aaagaatagagagagattgagttttataatttgaaccctccatcatttaa
tgacttttaaacagtacaatgtttaacagattgcctacttaaattaaaga
aaggttgaataaattaataaagaacgaatgaatacacccacactgaaaac
aaaataccaagggatataaggtgatttatcatcttatcccataatcatcc
cgctcatgctcaggtagccttcacactgtttcttagcctcatcttagagg
ccagtgtcttcctatcctatggcatggcatgagcatgccccaggatggcc
tcctgcagccccattaagggatgccatcacatcctggtcttgttcacagt
gaattaacaagacccatcttcacctagaagccggtattcatgtaaagtgg
gacccatagaataagctttataatcttccagcagtggaggagttgaaatg
ttagcacttgatattattgttctagtaaagtcaggctgttttatctactc
agtgagcgagtggaacaccaacaggtagcatgtgttcatatttacccttg
aaatgcaaagaggagcaggaaaaccagcagacttatctgtgtacttttag
ctacacacgtaacagccttgttcctgctggacaaacttatcttctgtcta
tcaacagcaccgcttttgaaaggagtctgctctgaagcgaccgatttcaa
agccaatcttcctttctctctcacttttgtcaaagagcacaggatcctac
cacatgctcgagtaagaggaaatcaaactcatgcctgccgtgctgctgag
aaagaactatagtgctcccattcagtaccatcaacagtggccaaaatccc
ttaggagtgctccagactaaatgccgatggcaggctgcctctccattcct
gacttggtctagcaagtctcaagatagcagtactatgtgcaatacctttg
gcaagagtacttgggcagcttttatctgggcaaaggcctctctcgatacg
accacgtagtagctggctcgtccacctattgttacctggatcatggggag
aacagagaagatcagattggggacacagttagaaaaactctctcctgttc
cgtaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_48757986_48759142
seq2: B6Ng01-240E01.g_63_1219 (reverse)

seq1  ACTTACGG-ACAGGAGAG-TATTTTCTAACTTGTGTCCCC-ATCTGATCT  47
      |||||||| |||||||||   ||||||||| ||||||||| |||||||||
seq2  ACTTACGGAACAGGAGAGAGTTTTTCTAAC-TGTGTCCCCAATCTGATCT  49

seq1  CTTCTTGTTTCTCCCATGATCCAGGTAACAATAGGTGGACGAGCCAGCTA  97
        || ||||   ||||||||||||||||||||||||||||||||||||||
seq2  TCTC-TGTTCTCCCCATGATCCAGGTAACAATAGGTGGACGAGCCAGCTA  98

seq1  CTACGT-GTCGTATCGAAGAGAAGCCTTTGCCCAGAT-AAAGCTGCCCAA  145
      |||||| ||||||||| ||||| |||||||||||||| ||||||||||||
seq2  CTACGTGGTCGTATCG-AGAGAGGCCTTTGCCCAGATAAAAGCTGCCCAA  147

seq1  GTACTCCTTGCCAAAGGTATTGCACATAGTACCTGCTATCTTGAGACTTG  195
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTACT-CTTGCCAAAGGTATTGCACATAGTA-CTGCTATCTTGAGACTTG  195

seq1  CTAGACCAAGTCAGGAATGGAGAGGCAGCCTGCCATCGGCATTTAGTCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCAAGTCAGGAATGGAGAGGCAGCCTGCCATCGGCATTTAGTCTG  245

seq1  GAGCACTCCTAAGGGATTTTGGCCACTGTTGATGGTACTGAATGGGAGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTCCTAAGGGATTTTGGCCACTGTTGATGGTACTGAATGGGAGCA  295

seq1  CTATAGTTCTTTCTCAGCAGCACGGCAGGCATGAGTTTGATTTCCTCTTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTTCTTTCTCAGCAGCACGGCAGGCATGAGTTTGATTTCCTCTTA  345

seq1  CTCGAGCATGTGGTAGGATCCTGTGCTCTTTGACAAAAGTGAGAGAGAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGCATGTGGTAGGATCCTGTGCTCTTTGACAAAAGTGAGAGAGAAA  395

seq1  GGAAGATTGGCTTTGAAATCGGTCGCTTCAGAGCAGACTCCTTTCAAAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATTGGCTTTGAAATCGGTCGCTTCAGAGCAGACTCCTTTCAAAAG  445

seq1  CGGTGCTGTTGATAGACAGAAGATAAGTTTGTCCAGCAGGAACAAGGCTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGCTGTTGATAGACAGAAGATAAGTTTGTCCAGCAGGAACAAGGCTG  495

seq1  TTACGTGTGTAGCTAAAAGTACACAGATAAGTCTGCTGGTTTTCCTGCTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGTGTGTAGCTAAAAGTACACAGATAAGTCTGCTGGTTTTCCTGCTC  545

seq1  CTCTTTGCATTTCAAGGGTAAATATGAACACATGCTACCTGTTGGTGTTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCATTTCAAGGGTAAATATGAACACATGCTACCTGTTGGTGTTC  595

seq1  CACTCGCTCACTGAGTAGATAAAACAGCCTGACTTTACTAGAACAATAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGCTCACTGAGTAGATAAAACAGCCTGACTTTACTAGAACAATAAT  645

seq1  ATCAAGTGCTAACATTTCAACTCCTCCACTGCTGGAAGATTATAAAGCTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGCTAACATTTCAACTCCTCCACTGCTGGAAGATTATAAAGCTT  695

seq1  ATTCTATGGGTCCCACTTTACATGAATACCGGCTTCTAGGTGAAGATGGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGGGTCCCACTTTACATGAATACCGGCTTCTAGGTGAAGATGGG  745

seq1  TCTTGTTAATTCACTGTGAACAAGACCAGGATGTGATGGCATCCCTTAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTAATTCACTGTGAACAAGACCAGGATGTGATGGCATCCCTTAAT  795

seq1  GGGGCTGCAGGAGGCCATCCTGGGGCATGCTCATGCCATGCCATAGGATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGCAGGAGGCCATCCTGGGGCATGCTCATGCCATGCCATAGGATA  845

seq1  GGAAGACACTGGCCTCTAAGATGAGGCTAAGAAACAGTGTGAAGGCTACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACACTGGCCTCTAAGATGAGGCTAAGAAACAGTGTGAAGGCTACC  895

seq1  TGAGCATGAGCGGGATGATTATGGGATAAGATGATAAATCACCTTATATC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATGAGCGGGATGATTATGGGATAAGATGATAAATCACCTTATATC  945

seq1  CCTTGGTATTTTGTTTTCAGTGTGGGTGTATTCATTCGTTCTTTATTAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTATTTTGTTTTCAGTGTGGGTGTATTCATTCGTTCTTTATTAAT  995

seq1  TTATTCAACCTTTCTTTAATTTAAGTAGGCAATCTGTTAAACATTGTACT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAACCTTTCTTTAATTTAAGTAGGCAATCTGTTAAACATTGTACT  1045

seq1  GTTTAAAAGTCATTAAATGATGGAGGGTTCAAATTATAAAACTCAATCTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAGTCATTAAATGATGGAGGGTTCAAATTATAAAACTCAATCTC  1095

seq1  TCTCTATTCTTTTTACTCTTTGCCAAAATTAATTTTTGACGATTTTAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTCTTTTTACTCTTTGCCAAAATTAATTTTTGACGATTTTAATT  1145

seq1  GAAATAGAATTC  1157
      ||||||||||||
seq2  GAAATAGAATTC  1157